Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 C 1.52999 * 109.47481 * 300.00513 * 4 3 2 6 6 C 1.53001 * 109.46829 * 60.00275 * 4 3 2 7 7 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.47393 * 180.02562 * 7 4 3 9 9 C 1.36936 * 119.99889 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00380 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99703 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00285 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00110 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46741 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47104 * 119.99793 * 13 11 9 16 16 H 1.48496 * 109.47452 * 240.00042 * 13 11 9 17 17 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99750 * 180.02562 * 17 2 1 19 19 C 1.50702 * 119.99928 * 0.28128 * 17 2 1 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 2 21 21 N 1.39836 * 125.38961 * 269.69002 * 20 19 17 22 22 C 1.30234 * 110.09780 * 179.83752 * 21 20 19 23 23 C 1.45858 * 107.65499 * 0.41731 * 22 21 20 24 24 C 1.39993 * 134.26435 * 179.71875 * 23 22 21 25 25 C 1.37014 * 118.15997 * 180.02562 * 24 23 22 26 26 C 1.38803 * 119.64641 * 359.97438 * 25 24 23 27 27 N 1.31508 * 121.58988 * 359.97438 * 26 25 24 28 28 C 1.32767 * 121.47131 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 1.08998 * 109.46857 * 59.99368 * 5 4 3 35 35 H 1.08993 * 109.46968 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.46881 * 299.99845 * 5 4 3 37 37 H 1.09001 * 109.47207 * 60.00301 * 6 4 3 38 38 H 1.09002 * 109.47399 * 179.97438 * 6 4 3 39 39 H 1.08998 * 109.47342 * 299.99886 * 6 4 3 40 40 H 1.09006 * 109.47343 * 300.00688 * 7 4 3 41 41 H 1.09005 * 109.46868 * 60.00504 * 7 4 3 42 42 H 0.96998 * 119.99783 * 0.02562 * 8 7 4 43 43 H 0.96997 * 120.00450 * 180.02562 * 12 11 9 44 44 H 1.09004 * 109.46965 * 299.72211 * 19 17 2 45 45 H 1.08994 * 109.46990 * 59.72065 * 19 17 2 46 46 H 1.08001 * 126.17486 * 180.15318 * 22 21 20 47 47 H 1.08003 * 120.92029 * 0.03842 * 24 23 22 48 48 H 1.07995 * 120.18073 * 180.02562 * 25 24 23 49 49 H 1.08000 * 119.20717 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2795 0.6441 -2.1637 6 6 1.1157 1.8932 -2.1638 7 6 3.2169 3.0357 -1.4426 8 7 3.4606 3.4589 -2.8239 9 6 4.1336 4.6249 -3.0741 10 1 4.4843 5.2328 -2.2533 11 6 4.3640 5.0261 -4.3828 12 7 3.9362 4.2855 -5.3832 13 14 5.2815 6.6171 -4.7243 14 1 5.6537 7.2596 -3.4382 15 1 6.5106 6.3222 -5.5037 16 1 4.4100 7.5339 -5.5022 17 6 2.1390 -1.1672 0.0005 18 8 3.3518 -1.1671 0.0010 19 6 1.3855 -2.4723 -0.0053 20 7 2.3376 -3.5857 -0.0102 21 7 2.8593 -4.2001 -1.1528 22 6 3.6797 -5.1530 -0.8135 23 6 3.7189 -5.2049 0.6436 24 6 4.3956 -6.0013 1.5751 25 6 4.1840 -5.7599 2.9071 26 6 3.3173 -4.7464 3.2919 27 7 2.6884 -4.0046 2.4066 28 6 2.8536 -4.1919 1.1026 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 2.7345 -0.2999 -2.1636 35 1 3.4608 0.9586 -3.1914 36 1 4.2318 0.5138 -1.6499 37 1 0.5266 2.6529 -1.6501 38 1 1.2973 2.2083 -3.1914 39 1 0.5707 0.9493 -2.1638 40 1 2.6274 3.7952 -0.9289 41 1 4.1693 2.9059 -0.9286 42 1 3.1453 2.9131 -3.5611 43 1 4.0975 4.5656 -6.2977 44 1 0.7588 -2.5340 0.8844 45 1 0.7590 -2.5261 -0.8955 46 1 4.2284 -5.7924 -1.4891 47 1 5.0661 -6.7842 1.2526 48 1 4.6896 -6.3544 3.6536 49 1 3.1554 -4.5625 4.3437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717455738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = 67.606184 kcal Electronic energy + Delta-G solvation = -30521.172702 eV Core-core repulsion = 26484.861776 eV Total energy + Delta-G solvation = -4036.310926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56547 -41.28979 -39.14507 -38.64453 -36.49171 -35.12398 -34.65949 -32.81327 -32.17347 -31.07987 -29.32028 -28.74783 -27.92061 -27.32326 -26.33359 -24.91392 -24.45503 -23.61655 -22.20959 -20.58855 -19.88476 -19.17397 -18.73226 -18.36271 -18.05451 -17.24332 -17.05866 -16.90686 -16.51841 -16.15443 -15.69180 -15.52342 -15.40430 -15.02505 -14.91052 -14.51751 -14.41596 -14.23322 -14.09343 -13.92973 -13.76722 -13.52266 -13.49300 -13.24921 -13.18615 -12.96424 -12.83836 -12.61648 -12.50089 -12.28295 -12.08391 -11.99837 -11.79355 -11.68832 -11.66936 -11.53557 -10.97860 -10.91489 -10.44742 -10.02348 -9.65457 -9.28448 -9.00486 -7.96853 -5.25136 -0.15358 0.36553 1.02598 1.43994 1.45704 1.47660 1.49013 1.55739 2.01434 2.54246 2.84617 3.22432 3.30676 3.36136 3.41002 3.72108 3.78321 3.85993 3.87487 3.91850 4.00571 4.10963 4.21671 4.22385 4.32808 4.41948 4.47510 4.50389 4.61833 4.66310 4.76267 4.77663 4.82943 4.85057 4.88053 4.94246 5.09559 5.12311 5.14193 5.24243 5.33996 5.37310 5.46031 5.46466 5.52086 5.60285 5.83194 6.25496 6.31337 6.42908 6.94153 7.08399 7.31770 8.08139 8.32457 9.27187 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.002265 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.670483 B =12358.359735 C =12836.994197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.601 5.601 3 C 0.138 3.862 4 C -0.075 4.075 5 C -0.102 4.102 6 C -0.126 4.126 7 C 0.164 3.836 8 N -0.739 5.739 9 C -0.243 4.243 10 H 0.074 0.926 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.975 3.025 14 H -0.266 1.266 15 H -0.295 1.295 16 H -0.290 1.290 17 C 0.491 3.509 18 O -0.569 6.569 19 C 0.129 3.871 20 N -0.392 5.392 21 N -0.269 5.269 22 C 0.090 3.910 23 C -0.250 4.250 24 C 0.007 3.993 25 C -0.213 4.213 26 C 0.159 3.841 27 N -0.535 5.535 28 C 0.293 3.707 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.028 0.972 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.004 0.996 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.237 0.763 47 H 0.175 0.825 48 H 0.179 0.821 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 -24.669 19.551 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.334 5.334 3 C 0.014 3.986 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.183 4.183 7 C 0.036 3.964 8 N -0.382 5.382 9 C -0.375 4.375 10 H 0.092 0.908 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.804 3.196 14 H -0.191 1.191 15 H -0.223 1.223 16 H -0.217 1.217 17 C 0.278 3.722 18 O -0.447 6.447 19 C 0.004 3.996 20 N -0.182 5.182 21 N -0.080 5.080 22 C -0.108 4.108 23 C -0.260 4.260 24 C -0.021 4.021 25 C -0.234 4.234 26 C -0.008 4.008 27 N -0.251 5.251 28 C 0.055 3.945 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.022 0.978 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.161 0.839 45 H 0.160 0.840 46 H 0.253 0.747 47 H 0.192 0.808 48 H 0.196 0.804 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.638 -23.045 18.836 31.285 hybrid contribution 1.588 0.089 -0.699 1.738 sum -8.049 -22.956 18.137 30.344 Atomic orbital electron populations 1.22374 0.76514 1.05368 1.04101 1.47805 1.08620 1.04591 1.72385 1.21334 0.97459 0.85117 0.94643 1.21002 0.96281 0.94075 0.96309 1.21478 0.98506 0.97310 0.98644 1.21804 0.95167 1.01845 0.99516 1.20726 0.95775 0.93535 0.86326 1.42582 1.67877 1.25103 1.02682 1.19683 1.27027 0.98762 0.92036 0.90797 1.25581 1.03365 1.02553 0.95468 1.69832 1.53380 1.40727 0.98224 0.85044 0.77493 0.79228 0.77823 1.19077 1.22256 1.21669 1.21317 0.88168 0.86609 0.76069 1.90746 1.15929 1.87566 1.50486 1.21626 0.89302 0.80501 1.08193 1.47734 1.40386 1.29512 1.00536 1.76702 1.13449 1.09904 1.07921 1.25741 0.95954 0.95707 0.93398 1.20904 1.06279 1.03462 0.95394 1.21283 0.93667 0.95485 0.91674 1.22090 1.02641 1.01573 0.97143 1.23429 0.89337 0.88817 0.99259 1.66749 1.28680 1.30543 0.99133 1.19323 0.94084 0.92577 0.88487 0.89852 0.89112 0.89086 0.87395 0.92330 0.93583 0.95330 0.95406 0.91262 0.95028 0.90762 0.94977 0.97756 0.79101 0.94027 0.83857 0.84023 0.74676 0.80771 0.80378 0.78945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 9.15 127.77 1.17 1.89 16 2 N -0.60 -13.85 2.40 -846.74 -2.03 -15.88 16 3 C 0.14 3.86 4.60 86.38 0.40 4.25 16 4 C -0.08 -2.61 0.60 -52.18 -0.03 -2.65 16 5 C -0.10 -4.15 6.97 71.98 0.50 -3.65 16 6 C -0.13 -3.90 7.05 71.98 0.51 -3.39 16 7 C 0.16 7.02 5.15 86.38 0.44 7.47 16 8 N -0.74 -39.66 5.00 -343.45 -1.72 -41.38 16 9 C -0.24 -14.23 9.99 84.03 0.84 -13.39 16 10 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 11 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 12 N -0.97 -61.65 13.06 21.65 0.28 -61.37 16 13 Si 0.98 47.90 29.55 68.60 2.03 49.93 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 16 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 17 C 0.49 13.91 6.15 87.66 0.54 14.45 16 18 O -0.57 -22.24 14.20 -3.04 -0.04 -22.28 16 19 C 0.13 2.79 5.44 85.64 0.47 3.25 16 20 N -0.39 -10.63 3.13 -348.82 -1.09 -11.72 16 21 N -0.27 -7.36 12.40 -53.15 -0.66 -8.01 16 22 C 0.09 1.88 12.29 86.90 1.07 2.95 16 23 C -0.25 -5.38 6.38 -20.23 -0.13 -5.51 16 24 C 0.01 0.09 10.18 22.41 0.23 0.32 16 25 C -0.21 -2.38 10.04 22.12 0.22 -2.15 16 26 C 0.16 2.47 11.15 84.88 0.95 3.41 16 27 N -0.54 -12.83 10.40 -192.95 -2.01 -14.84 16 28 C 0.29 7.73 7.97 134.12 1.07 8.80 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.09 1.10 6.05 -2.39 -0.01 1.08 16 31 H 0.09 0.76 6.43 -2.39 -0.02 0.74 16 32 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 33 H 0.06 1.95 7.42 -2.38 -0.02 1.93 16 34 H 0.05 1.75 6.15 -2.39 -0.01 1.74 16 35 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 36 H 0.03 1.24 7.73 -2.39 -0.02 1.22 16 37 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 38 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 39 H 0.07 1.85 5.99 -2.39 -0.01 1.83 16 40 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 42 H 0.38 21.43 5.36 -92.71 -0.50 20.93 16 43 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.14 2.33 8.11 -2.38 -0.02 2.31 16 45 H 0.14 2.34 7.40 -2.39 -0.02 2.33 16 46 H 0.24 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 48 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 49 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -89.14 393.37 3.94 -85.19 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.48 Total: 28.48 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 8.70 Total: 11.88 kcal Atomic # 7 Polarization: -145.98 SS G_CDS: -7.22 Total: -153.20 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.04 Total: -22.28 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -89.14 3.94 -85.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717455738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.801 kcal (2) G-P(sol) polarization free energy of solvation -89.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds