Wall clock time and date at job start Wed Apr 1 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46972 * 2 1 4 4 N 1.46504 * 109.47359 * 119.99749 * 2 1 3 5 5 C 1.46501 * 120.00115 * 294.45078 * 4 2 1 6 6 C 1.52999 * 109.47214 * 270.00006 * 5 4 2 7 7 N 1.46490 * 109.46910 * 180.02562 * 6 5 4 8 8 C 1.46508 * 120.00081 * 269.99430 * 7 6 5 9 9 C 1.36941 * 120.00387 * 90.00118 * 7 6 5 10 10 H 1.07999 * 119.99710 * 21.16172 * 9 7 6 11 11 C 1.38807 * 120.00354 * 201.17252 * 9 7 6 12 12 N 1.31622 * 119.99771 * 12.77038 * 11 9 7 13 13 Si 1.86797 * 120.00213 * 192.77531 * 11 9 7 14 14 H 1.48496 * 109.47346 * 59.99510 * 13 11 9 15 15 H 1.48506 * 109.47173 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46893 * 299.99334 * 13 11 9 17 17 C 1.34773 * 119.99461 * 114.45087 * 4 2 1 18 18 O 1.21566 * 119.99777 * 183.51619 * 17 4 2 19 19 C 1.47760 * 120.00782 * 3.51378 * 17 4 2 20 20 C 1.39638 * 121.07492 * 306.33039 * 19 17 4 21 21 C 1.38336 * 119.37932 * 179.97438 * 20 19 17 22 22 N 1.31729 * 121.54404 * 359.97438 * 21 20 19 23 23 C 1.32109 * 121.95017 * 359.97438 * 22 21 20 24 24 C 1.40833 * 120.46448 * 0.02562 * 23 22 21 25 25 N 1.34647 * 107.26044 * 179.97438 * 24 23 22 26 26 C 1.30283 * 109.67425 * 359.97438 * 25 24 23 27 27 N 1.35988 * 110.05170 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.35609 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47492 * 299.99947 * 1 2 3 30 30 H 1.09001 * 109.47355 * 59.99757 * 1 2 3 31 31 H 1.09002 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47492 * 240.00053 * 2 1 3 33 33 H 1.09010 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47064 * 299.99566 * 3 2 1 35 35 H 1.09002 * 109.47299 * 60.00439 * 3 2 1 36 36 H 1.09000 * 109.46807 * 30.00082 * 5 4 2 37 37 H 1.08996 * 109.46672 * 149.99825 * 5 4 2 38 38 H 1.09002 * 109.46629 * 300.00101 * 6 5 4 39 39 H 1.09000 * 109.47284 * 59.99814 * 6 5 4 40 40 H 1.09000 * 109.46317 * 95.08751 * 8 7 6 41 41 H 1.08995 * 109.46982 * 215.08486 * 8 7 6 42 42 H 1.08997 * 109.46738 * 335.08681 * 8 7 6 43 43 H 0.97006 * 120.00032 * 180.02562 * 12 11 9 44 44 H 1.08004 * 120.30885 * 359.95167 * 20 19 17 45 45 H 1.07997 * 119.22871 * 179.72283 * 21 20 19 46 46 H 1.07997 * 124.97604 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.46627 * 269.97373 * 28 27 26 48 48 H 1.08999 * 109.47302 * 29.96797 * 28 27 26 49 49 H 1.09002 * 109.47339 * 149.97874 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7674 -0.1231 2.5234 6 6 2.9181 0.8103 2.9048 7 7 2.6674 1.3772 4.2321 8 6 1.9281 2.6352 4.3637 9 6 3.1243 0.7314 5.3499 10 1 3.9346 0.0218 5.2703 11 6 2.5459 0.9886 6.5853 12 7 1.4098 1.6496 6.6551 13 14 3.3799 0.3970 8.1485 14 1 4.7300 1.0068 8.2505 15 1 2.5666 0.7964 9.3251 16 1 3.5062 -1.0822 8.1127 17 6 2.6984 -1.8478 1.0756 18 8 3.0481 -2.4538 2.0698 19 6 3.0191 -2.3803 -0.2649 20 6 2.0204 -2.5727 -1.2218 21 6 2.3601 -3.0728 -2.4661 22 7 3.6059 -3.3724 -2.7717 23 6 4.5949 -3.2120 -1.9107 24 6 4.3432 -2.7085 -0.6198 25 7 5.5238 -2.6555 0.0256 26 6 6.4720 -3.0831 -0.7589 27 7 5.9543 -3.4399 -1.9646 28 6 6.7018 -3.9675 -3.1089 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.8336 0.4388 2.5076 37 1 1.6948 -0.9280 3.2547 38 1 3.8519 0.2483 2.9205 39 1 2.9907 1.6152 2.1733 40 1 0.8748 2.4202 4.5442 41 1 2.3305 3.2074 5.1996 42 1 2.0289 3.2135 3.4454 43 1 1.0057 1.8297 7.5184 44 1 0.9925 -2.3336 -0.9925 45 1 1.5852 -3.2249 -3.2028 46 1 7.5163 -3.1458 -0.4905 47 1 7.0326 -3.1415 -3.7386 48 1 7.5694 -4.5221 -2.7516 49 1 6.0594 -4.6310 -3.6878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717950565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:24 Heat of formation + Delta-G solvation = 99.041143 kcal Electronic energy + Delta-G solvation = -31211.112920 eV Core-core repulsion = 27176.165116 eV Total energy + Delta-G solvation = -4034.947804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.63336 -39.99191 -38.31567 -36.63009 -35.35218 -34.71901 -32.43445 -31.81771 -30.89424 -29.98447 -28.18955 -27.51594 -27.15373 -25.78433 -24.96993 -23.42148 -23.18536 -22.14118 -21.13383 -20.31721 -18.85099 -18.19642 -17.64251 -17.17087 -16.59013 -16.38995 -15.86247 -15.38797 -15.10893 -14.81430 -14.32423 -14.24128 -13.95038 -13.90927 -13.73013 -13.39933 -13.27895 -13.16580 -13.08046 -12.66592 -12.58921 -12.46449 -12.13300 -12.08296 -11.70129 -11.42932 -11.13161 -11.03803 -11.01022 -10.78071 -10.72205 -10.64871 -10.39336 -10.06272 -9.89550 -9.79427 -9.59876 -9.21993 -8.86827 -8.70828 -8.52864 -8.28306 -6.65871 -5.61941 -3.05459 0.35835 0.94513 2.03155 2.57504 2.91603 3.19446 3.50580 3.53133 3.56821 3.63725 3.80166 4.04957 4.24656 4.42464 4.61617 4.63279 4.74922 4.75271 4.84197 4.94044 5.04649 5.08749 5.12491 5.28620 5.53684 5.57867 5.63232 5.63816 5.67129 5.81399 5.83335 5.85882 5.91838 5.95985 6.18931 6.27915 6.32404 6.37403 6.45290 6.63964 6.75300 6.79358 6.90918 7.16462 7.45467 7.55850 7.57023 7.73933 7.78985 7.95453 8.47031 8.52367 9.35739 9.98076 10.45372 11.43522 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003132 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.637290 B = 8936.550568 C =10197.063278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 C -0.164 4.164 4 N -0.594 5.594 5 C 0.095 3.905 6 C 0.139 3.861 7 N -0.598 5.598 8 C 0.164 3.836 9 C -0.248 4.248 10 H 0.070 0.930 11 C 0.000 4.000 12 N -0.912 5.912 13 Si 0.905 3.095 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.555 3.445 18 O -0.506 6.506 19 C -0.014 4.014 20 C -0.161 4.161 21 C 0.134 3.866 22 N -0.474 5.474 23 C 0.235 3.765 24 C 0.044 3.956 25 N -0.470 5.470 26 C 0.274 3.726 27 N -0.487 5.487 28 C 0.083 3.917 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.029 0.971 41 H 0.044 0.956 42 H -0.005 1.005 43 H 0.251 0.749 44 H 0.151 0.849 45 H 0.171 0.829 46 H 0.224 0.776 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -7.437 -25.785 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 C -0.222 4.222 4 N -0.328 5.328 5 C -0.028 4.028 6 C 0.011 3.989 7 N -0.321 5.321 8 C 0.020 3.980 9 C -0.378 4.378 10 H 0.088 0.912 11 C -0.198 4.198 12 N -0.558 5.558 13 Si 0.735 3.265 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.209 1.209 17 C 0.340 3.660 18 O -0.380 6.380 19 C -0.027 4.027 20 C -0.184 4.184 21 C -0.032 4.032 22 N -0.187 5.187 23 C -0.001 4.001 24 C -0.079 4.079 25 N -0.187 5.187 26 C -0.011 4.011 27 N -0.180 5.180 28 C -0.058 4.058 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.061 0.939 44 H 0.168 0.832 45 H 0.188 0.812 46 H 0.241 0.759 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.454 -7.773 -25.128 26.677 hybrid contribution 0.089 -0.334 0.813 0.884 sum 4.543 -8.108 -24.315 26.031 Atomic orbital electron populations 1.22204 0.94874 1.02266 1.02910 1.21369 0.94524 0.94169 0.88431 1.22270 1.01734 0.95472 1.02701 1.48188 1.54381 1.21977 1.08208 1.22594 1.00647 0.98733 0.80866 1.21308 0.95804 0.94364 0.87446 1.43976 1.65146 1.22288 1.00708 1.20815 0.96221 0.85732 0.95270 1.19259 1.11815 1.21233 0.85483 0.91223 1.24969 0.96020 1.00534 0.98236 1.70064 1.17050 1.45178 1.23543 0.86318 0.78682 0.78685 0.82840 1.21148 1.21737 1.20850 1.17972 0.78890 0.81458 0.87686 1.90867 1.51344 1.58067 1.37751 1.19714 0.90610 0.97450 0.94930 1.22198 1.00219 1.02199 0.93789 1.22456 0.91094 0.94443 0.95231 1.66150 0.99325 1.18480 1.34792 1.18889 0.85933 1.02356 0.92887 1.19180 0.93067 1.03600 0.92037 1.70285 0.97595 1.20547 1.30295 1.25656 1.00509 0.95475 0.79498 1.45108 1.04604 1.53653 1.14642 1.22013 0.96757 1.00124 0.86953 0.91439 0.91476 0.92400 0.89189 0.92216 0.91884 0.90983 0.91191 0.89638 0.93620 0.93938 0.95305 0.93709 0.98639 0.93863 0.83156 0.81160 0.75936 0.90556 0.89159 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.02 37.15 0.33 -1.36 16 2 C 0.12 1.47 2.51 -67.93 -0.17 1.30 16 3 C -0.16 -2.00 7.92 37.16 0.29 -1.71 16 4 N -0.59 -9.97 2.40 -167.25 -0.40 -10.37 16 5 C 0.10 1.94 5.03 -4.04 -0.02 1.92 16 6 C 0.14 3.11 5.73 -4.05 -0.02 3.09 16 7 N -0.60 -15.81 2.93 -181.12 -0.53 -16.34 16 8 C 0.16 4.13 9.01 59.85 0.54 4.67 16 9 C -0.25 -7.28 9.68 -15.06 -0.15 -7.42 16 10 H 0.07 2.07 7.85 -52.49 -0.41 1.66 16 11 C 0.00 0.00 5.11 -17.43 -0.09 -0.09 16 12 N -0.91 -27.35 10.59 55.49 0.59 -26.76 16 13 Si 0.90 23.15 29.57 -169.99 -5.03 18.13 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 17 C 0.55 10.38 7.25 -12.37 -0.09 10.29 16 18 O -0.51 -11.92 16.65 5.31 0.09 -11.83 16 19 C -0.01 -0.21 4.90 -104.45 -0.51 -0.73 16 20 C -0.16 -1.77 7.50 -39.02 -0.29 -2.06 16 21 C 0.13 1.27 11.14 -17.56 -0.20 1.07 16 22 N -0.47 -5.54 10.35 -12.30 -0.13 -5.67 16 23 C 0.24 3.05 8.02 -155.65 -1.25 1.80 16 24 C 0.04 0.69 7.00 -84.62 -0.59 0.10 16 25 N -0.47 -7.50 11.23 -11.88 -0.13 -7.64 16 26 C 0.27 2.87 12.50 -89.69 -1.12 1.75 16 27 N -0.49 -4.79 3.20 -124.98 -0.40 -5.19 16 28 C 0.08 0.41 11.20 59.85 0.67 1.08 16 29 H 0.07 0.81 6.89 -51.93 -0.36 0.45 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.56 7.28 -51.93 -0.38 0.18 16 32 H 0.09 1.00 4.58 -51.93 -0.24 0.76 16 33 H 0.06 0.80 7.93 -51.92 -0.41 0.38 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.00 6.38 -51.93 -0.33 0.67 16 36 H 0.07 1.36 6.71 -51.93 -0.35 1.01 16 37 H 0.09 2.08 7.37 -51.93 -0.38 1.69 16 38 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 39 H 0.04 0.85 5.13 -51.93 -0.27 0.58 16 40 H 0.03 0.77 7.39 -51.93 -0.38 0.38 16 41 H 0.04 1.21 7.20 -51.93 -0.37 0.84 16 42 H 0.00 -0.11 7.84 -51.93 -0.41 -0.51 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.15 1.30 6.32 -52.48 -0.33 0.97 16 45 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.22 1.18 8.06 -52.49 -0.42 0.75 16 47 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -38.91 393.82 -9.81 -48.71 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.13 Total: -2.67 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -2.66 Total: 13.70 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.00 Total: -71.97 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.03 Total: 18.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.91 -9.81 -48.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717950565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.752 kcal (2) G-P(sol) polarization free energy of solvation -38.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds