Wall clock time and date at job start Wed Apr 1 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 110.87552 * 2 1 4 4 C 1.55135 * 110.98829 * 236.15392 * 2 1 3 5 5 C 1.54321 * 103.01804 * 206.21954 * 4 2 1 6 6 N 1.47440 * 107.23493 * 22.28525 * 5 4 2 7 7 C 1.46896 * 111.00181 * 123.25851 * 6 5 4 8 8 C 1.50696 * 109.47116 * 69.87202 * 7 6 5 9 9 O 1.21278 * 120.00273 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99628 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99529 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46960 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.49898 * 55.06190 * 12 11 10 14 14 C 1.53197 * 109.49321 * 295.00238 * 12 11 10 15 15 N 1.46936 * 108.88860 * 185.31093 * 14 12 11 16 16 C 1.36935 * 120.62903 * 233.67990 * 15 14 12 17 17 H 1.08004 * 119.99817 * 27.39183 * 16 15 14 18 18 C 1.38804 * 120.00238 * 207.39383 * 16 15 14 19 19 N 1.31624 * 120.00025 * 17.25587 * 18 16 15 20 20 Si 1.86801 * 120.00311 * 197.25673 * 18 16 15 21 21 H 1.48505 * 109.47002 * 90.00337 * 20 18 16 22 22 H 1.48506 * 109.47209 * 209.99842 * 20 18 16 23 23 H 1.48497 * 109.47373 * 330.00036 * 20 18 16 24 24 C 1.47199 * 118.55327 * 53.53924 * 15 14 12 25 25 C 1.53191 * 108.85944 * 306.47272 * 24 15 14 26 26 C 1.53035 * 109.52418 * 175.14855 * 12 11 10 27 27 F 1.39896 * 109.45878 * 301.35037 * 26 12 11 28 28 F 1.39897 * 109.46050 * 61.32637 * 26 12 11 29 29 C 1.47847 * 108.56298 * 0.98920 * 6 5 4 30 30 H 1.08998 * 109.47774 * 182.39122 * 1 2 3 31 31 H 1.09004 * 109.47070 * 302.39390 * 1 2 3 32 32 H 1.09008 * 109.47029 * 62.39008 * 1 2 3 33 33 H 1.09001 * 110.70582 * 87.83663 * 4 2 1 34 34 H 1.09006 * 110.86118 * 324.67255 * 4 2 1 35 35 H 1.09004 * 109.88515 * 262.87666 * 5 4 2 36 36 H 1.09002 * 109.88796 * 141.69157 * 5 4 2 37 37 H 1.09005 * 109.46717 * 309.87227 * 7 6 5 38 38 H 1.08998 * 109.47030 * 189.87679 * 7 6 5 39 39 H 0.96993 * 120.00286 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.46879 * 60.00614 * 11 10 8 41 41 H 1.08994 * 109.47106 * 300.00320 * 11 10 8 42 42 H 1.08995 * 109.58688 * 305.16642 * 14 12 11 43 43 H 1.08992 * 109.59155 * 65.45395 * 14 12 11 44 44 H 0.96996 * 120.00327 * 179.97438 * 19 18 16 45 45 H 1.09006 * 109.53081 * 186.67784 * 24 15 14 46 46 H 1.08996 * 109.56546 * 66.29932 * 24 15 14 47 47 H 1.08997 * 109.49792 * 294.70915 * 25 24 15 48 48 H 1.08995 * 109.50183 * 174.60240 * 25 24 15 49 49 H 1.09002 * 110.37198 * 94.73883 * 29 6 5 50 50 H 1.09006 * 110.36912 * 217.07295 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0856 -0.8067 -1.2030 5 6 3.4695 -1.2701 -0.7013 6 7 3.4321 -1.2413 0.7724 7 6 3.7628 -2.5580 1.3333 8 6 5.2223 -2.8514 1.0995 9 8 5.9186 -2.0430 0.5229 10 7 5.7541 -4.0118 1.5323 11 6 7.1732 -4.2968 1.3055 12 6 7.5176 -5.6683 1.8896 13 1 6.8515 -6.4210 1.4680 14 6 7.3498 -5.6324 3.4120 15 7 7.8048 -6.9128 3.9710 16 6 6.9882 -7.6459 4.7902 17 1 5.9154 -7.5632 4.6973 18 6 7.5393 -8.4951 5.7398 19 7 8.7996 -8.3574 6.0935 20 14 6.4924 -9.8335 6.5157 21 1 6.5967 -11.0747 5.7071 22 1 6.9725 -10.1000 7.8956 23 1 5.0759 -9.3900 6.5614 24 6 9.1545 -7.3901 3.6286 25 6 9.3020 -7.4065 2.1039 26 6 8.9673 -6.0202 1.5483 27 9 9.1315 -6.0229 0.1590 28 9 9.8235 -5.0713 2.1171 29 6 2.0856 -0.8059 1.2006 30 1 -0.3634 -1.0267 0.0429 31 1 -0.3633 0.5506 0.8678 32 1 -0.3633 0.4763 -0.9107 33 1 2.1878 -0.1686 -2.0808 34 1 1.4488 -1.6636 -1.4231 35 1 4.2419 -0.5930 -1.0660 36 1 3.6689 -2.2843 -1.0474 37 1 3.1562 -3.3225 0.8477 38 1 3.5590 -2.5584 2.4040 39 1 5.1973 -4.6582 1.9938 40 1 7.7794 -3.5321 1.7911 41 1 7.3772 -4.2966 0.2348 42 1 7.9469 -4.8201 3.8263 43 1 6.3000 -5.4777 3.6604 44 1 9.1846 -8.9505 6.7574 45 1 9.2948 -8.3978 4.0200 46 1 9.8987 -6.7212 4.0606 47 1 8.6191 -8.1428 1.6802 48 1 10.3272 -7.6662 1.8403 49 1 1.4535 -1.6706 1.4024 50 1 2.1552 -0.1712 2.0841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724378226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:08 Heat of formation + Delta-G solvation = -116.310240 kcal Electronic energy + Delta-G solvation = -31495.051602 eV Core-core repulsion = 27000.076275 eV Total energy + Delta-G solvation = -4494.975327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.53164 -46.48382 -40.11349 -38.73984 -37.30436 -34.94778 -33.58937 -32.69876 -31.00056 -30.28233 -29.96807 -28.00630 -25.85745 -25.24474 -24.60000 -22.49834 -21.69574 -21.17748 -20.73259 -20.18039 -19.52087 -17.41249 -16.84456 -16.79150 -16.68466 -16.32288 -15.82598 -15.53210 -15.36741 -14.98378 -14.78077 -14.32828 -14.08825 -13.89416 -13.59738 -13.45375 -13.38341 -13.26346 -13.11801 -12.88641 -12.79282 -12.78098 -12.48038 -12.22091 -12.14967 -11.68982 -11.59472 -11.55710 -11.42162 -11.27375 -11.23261 -11.00420 -10.89545 -10.86607 -10.63937 -10.53293 -10.09332 -9.94846 -9.86333 -9.60695 -8.97287 -8.64088 -8.50709 -6.92996 -5.95880 -3.40291 2.71268 3.01263 3.28070 3.35137 3.36909 3.81060 4.19124 4.26925 4.35049 4.36202 4.58028 4.60445 4.67567 4.80352 4.89186 4.98225 5.00659 5.07996 5.14132 5.17394 5.19569 5.26195 5.32861 5.40843 5.41327 5.43604 5.53429 5.58751 5.64374 5.70914 5.78870 5.90299 5.91736 6.01004 6.06161 6.14099 6.24893 6.31309 6.41725 6.44938 6.68045 6.71492 6.72562 7.08317 7.42870 7.56312 7.62483 8.23837 8.31229 8.99996 9.62842 10.18554 11.13366 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.002570 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.187811 B =10890.601647 C =12647.819471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.512 5.512 7 C 0.031 3.969 8 C 0.512 3.488 9 O -0.523 6.523 10 N -0.726 5.726 11 C 0.128 3.872 12 C -0.155 4.155 13 H 0.101 0.899 14 C 0.153 3.847 15 N -0.591 5.591 16 C -0.261 4.261 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.169 3.831 25 C -0.178 4.178 26 C 0.300 3.700 27 F -0.214 7.214 28 F -0.199 7.199 29 C 0.046 3.954 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.402 0.598 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.257 0.743 45 H 0.101 0.899 46 H 0.033 0.967 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 10.177 -11.859 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.180 4.180 5 C -0.076 4.076 6 N -0.237 5.237 7 C -0.100 4.100 8 C 0.297 3.703 9 O -0.398 6.398 10 N -0.380 5.380 11 C 0.003 3.997 12 C -0.176 4.176 13 H 0.119 0.881 14 C 0.026 3.974 15 N -0.313 5.313 16 C -0.390 4.390 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.043 3.957 25 C -0.218 4.218 26 C 0.263 3.737 27 F -0.195 7.195 28 F -0.180 7.180 29 C -0.082 4.082 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.237 0.763 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.119 0.881 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.067 0.933 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.656 11.033 -11.947 20.008 hybrid contribution -1.097 -1.651 0.274 2.001 sum -12.754 9.382 -11.673 19.671 Atomic orbital electron populations 1.21720 0.94343 1.01903 1.01964 1.22280 0.95527 0.99885 0.94398 0.89659 1.22920 0.96721 0.99922 0.98389 1.22789 0.96868 1.01158 0.86805 1.63268 1.27047 1.24719 1.08619 1.22174 0.93697 0.91689 1.02472 1.20445 0.89708 0.81244 0.78898 1.90701 1.62136 1.46216 1.40787 1.45944 1.11311 1.20256 1.60454 1.21277 0.81470 0.96094 1.00810 1.22960 0.94494 0.97526 1.02638 0.88104 1.20903 0.99178 0.90045 0.87273 1.44155 1.14388 1.18046 1.54667 1.19151 0.89362 1.19532 1.10957 0.91275 1.25080 0.96555 1.01165 0.96530 1.70017 1.13114 1.38340 1.32737 0.86247 0.79728 0.82124 0.78364 1.21312 1.21652 1.20350 1.20898 0.86313 1.02358 0.86135 1.23264 1.02714 0.92644 1.03209 1.21031 0.89099 0.89950 0.73586 1.92954 1.96537 1.97255 1.32731 1.92967 1.72979 1.67369 1.84674 1.23156 0.88007 0.98520 0.98472 0.92661 0.92340 0.92383 0.90730 0.91547 0.89813 0.93027 0.91780 0.87705 0.76310 0.90725 0.91225 0.94933 0.91650 0.93303 0.88089 0.94904 0.89605 0.90524 0.93320 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.30 37.16 0.35 -0.47 16 2 C -0.10 -0.75 3.63 -88.49 -0.32 -1.07 16 3 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.14 -1.10 6.41 -24.91 -0.16 -1.26 16 5 C 0.05 0.54 5.65 -2.84 -0.02 0.53 16 6 N -0.51 -5.66 4.85 -232.69 -1.13 -6.79 16 7 C 0.03 0.32 5.03 -4.98 -0.03 0.30 16 8 C 0.51 6.99 7.48 -10.98 -0.08 6.91 16 9 O -0.52 -9.20 15.55 5.56 0.09 -9.11 16 10 N -0.73 -9.31 5.33 -60.29 -0.32 -9.63 16 11 C 0.13 1.93 4.84 -4.04 -0.02 1.91 16 12 C -0.15 -2.50 2.03 -90.50 -0.18 -2.69 16 13 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.15 2.90 5.39 -3.70 -0.02 2.88 16 15 N -0.59 -13.55 3.01 -172.10 -0.52 -14.06 16 16 C -0.26 -6.55 9.59 -15.06 -0.14 -6.69 16 17 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 18 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 19 N -0.90 -24.66 11.18 55.49 0.62 -24.04 16 20 Si 0.91 20.35 29.59 -169.99 -5.03 15.32 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.17 3.77 5.12 -3.56 -0.02 3.75 16 25 C -0.18 -3.24 5.62 -26.61 -0.15 -3.39 16 26 C 0.30 5.30 1.63 -26.69 -0.04 5.26 16 27 F -0.21 -3.70 16.41 2.25 0.04 -3.66 16 28 F -0.20 -3.83 15.73 2.25 0.04 -3.80 16 29 C 0.05 0.39 6.15 -2.30 -0.01 0.37 16 30 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.56 7.31 -51.93 -0.38 0.18 16 37 H 0.06 0.54 7.96 -51.93 -0.41 0.13 16 38 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.40 4.31 7.69 -40.82 -0.31 4.00 16 40 H 0.07 1.25 7.97 -51.93 -0.41 0.84 16 41 H 0.07 1.10 7.63 -51.93 -0.40 0.70 16 42 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 43 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.10 2.49 6.04 -51.93 -0.31 2.18 16 46 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 49 H 0.05 0.36 7.68 -51.93 -0.40 -0.04 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -30.14 394.69 -9.64 -39.78 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.43 Total: 3.65 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.94 Total: 6.41 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.35 Total: -54.53 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.07 Total: -7.46 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.14 -9.64 -39.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724378226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.531 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds