Wall clock time and date at job start Wed Apr 1 2020 03:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.27287 * 2 1 4 4 C 1.54586 * 110.39051 * 122.15412 * 2 1 3 5 5 C 1.54945 * 102.92285 * 140.91624 * 4 2 1 6 6 N 1.48536 * 103.22409 * 322.58222 * 5 4 2 7 7 C 1.46894 * 111.00177 * 159.72075 * 6 5 4 8 8 C 1.50704 * 109.46954 * 52.60472 * 7 6 5 9 9 O 1.21284 * 120.00013 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00086 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00211 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47072 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.50084 * 54.93600 * 12 11 10 14 14 C 1.53189 * 109.49698 * 294.83492 * 12 11 10 15 15 N 1.46932 * 108.77363 * 185.41424 * 14 12 11 16 16 C 1.36934 * 120.63025 * 233.63223 * 15 14 12 17 17 H 1.08003 * 120.00131 * 27.66336 * 16 15 14 18 18 C 1.38814 * 120.00227 * 207.66509 * 16 15 14 19 19 N 1.31622 * 119.99988 * 17.36956 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 197.37650 * 18 16 15 21 21 H 1.48499 * 109.47252 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47504 * 119.99596 * 20 18 16 23 23 H 1.48506 * 109.46915 * 239.99857 * 20 18 16 24 24 C 1.46921 * 118.73604 * 53.61547 * 15 14 12 25 25 C 1.53188 * 108.77537 * 306.38684 * 24 15 14 26 26 C 1.53039 * 109.31564 * 54.63866 * 25 24 15 27 27 F 1.39895 * 109.46068 * 178.61601 * 26 25 24 28 28 F 1.39899 * 109.44499 * 58.64851 * 26 25 24 29 29 C 1.47906 * 105.82066 * 39.20520 * 6 5 4 30 30 H 1.09000 * 109.47276 * 182.08363 * 1 2 3 31 31 H 1.09004 * 109.46548 * 302.08569 * 1 2 3 32 32 H 1.09006 * 109.47253 * 62.08349 * 1 2 3 33 33 H 1.09001 * 110.72328 * 259.26693 * 4 2 1 34 34 H 1.08993 * 110.73304 * 22.55543 * 4 2 1 35 35 H 1.09003 * 110.66737 * 204.14726 * 5 4 2 36 36 H 1.08995 * 110.66751 * 81.01748 * 5 4 2 37 37 H 1.08992 * 109.47356 * 292.60771 * 7 6 5 38 38 H 1.08994 * 109.47193 * 172.60214 * 7 6 5 39 39 H 0.97004 * 119.99787 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.47247 * 300.00440 * 11 10 8 41 41 H 1.09004 * 109.46696 * 59.99789 * 11 10 8 42 42 H 1.08993 * 109.58771 * 305.20573 * 14 12 11 43 43 H 1.09001 * 109.58434 * 65.63430 * 14 12 11 44 44 H 0.96989 * 120.00253 * 180.02562 * 19 18 16 45 45 H 1.09008 * 109.58598 * 186.60194 * 24 15 14 46 46 H 1.08996 * 109.59169 * 66.18155 * 24 15 14 47 47 H 1.08998 * 109.49862 * 294.68262 * 25 24 15 48 48 H 1.09003 * 109.49597 * 174.59155 * 25 24 15 49 49 H 1.08998 * 109.91042 * 94.02303 * 29 6 5 50 50 H 1.08995 * 109.91709 * 215.31699 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0686 -0.7712 1.2267 5 6 3.2882 -1.5327 0.6492 6 7 2.8333 -1.9216 -0.7102 7 6 3.9766 -2.2223 -1.5820 8 6 4.8699 -3.2321 -0.9086 9 8 4.5825 -3.6589 0.1897 10 7 5.9881 -3.6610 -1.5268 11 6 6.8567 -4.6423 -0.8719 12 6 8.0475 -4.9556 -1.7799 13 1 8.5581 -4.0293 -2.0429 14 6 7.5511 -5.6461 -3.0541 15 7 8.7138 -6.0560 -3.8535 16 6 8.8256 -5.6807 -5.1656 17 1 8.3581 -4.7695 -5.5085 18 6 9.5399 -6.4715 -6.0553 19 7 9.8156 -7.7217 -5.7495 20 14 10.1099 -5.7614 -7.6863 21 1 9.6752 -4.3451 -7.7885 22 1 11.5910 -5.8321 -7.7664 23 1 9.5160 -6.5427 -8.8009 24 6 9.7543 -6.8758 -3.2180 25 6 10.2260 -6.1716 -1.9420 26 6 9.0186 -5.8838 -1.0467 27 9 9.4496 -5.2690 0.1337 28 9 8.3715 -7.0850 -0.7373 29 6 2.0644 -0.7671 -1.2237 30 1 -0.3634 -1.0270 0.0374 31 1 -0.3632 0.5459 0.8708 32 1 -0.3634 0.4812 -0.9081 33 1 2.3810 -0.0803 2.0099 34 1 1.3207 -1.4692 1.6025 35 1 3.5090 -2.4161 1.2484 36 1 4.1580 -0.8785 0.5914 37 1 4.5396 -1.3084 -1.7712 38 1 3.6161 -2.6291 -2.5268 39 1 6.2181 -3.3194 -2.4050 40 1 7.2176 -4.2350 0.0725 41 1 6.2937 -5.5562 -0.6819 42 1 6.9625 -6.5241 -2.7883 43 1 6.9378 -4.9530 -3.6300 44 1 10.3149 -8.2741 -6.3709 45 1 10.5948 -6.9942 -3.9020 46 1 9.3454 -7.8541 -2.9657 47 1 10.7164 -5.2340 -2.2039 48 1 10.9282 -6.8138 -1.4104 49 1 2.7147 -0.1203 -1.8125 50 1 1.2325 -1.1173 -1.8348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724378229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:16 Heat of formation + Delta-G solvation = -112.814157 kcal Electronic energy + Delta-G solvation = -31565.133078 eV Core-core repulsion = 27070.309352 eV Total energy + Delta-G solvation = -4494.823726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.54674 -46.49847 -40.22589 -38.67194 -37.33816 -35.02651 -33.58646 -32.73088 -31.03658 -30.28760 -29.88482 -27.90808 -25.82622 -25.24458 -24.57207 -22.50821 -21.78758 -21.27835 -20.48348 -20.29522 -19.55524 -17.54771 -16.91177 -16.83334 -16.60884 -15.98338 -15.83463 -15.52869 -15.37589 -15.03896 -14.92091 -14.43123 -14.06313 -13.80419 -13.65867 -13.51207 -13.41453 -13.25395 -13.14009 -13.05697 -12.81211 -12.62063 -12.24285 -12.21389 -11.87681 -11.70796 -11.64573 -11.60865 -11.50374 -11.27176 -11.13007 -10.98565 -10.87216 -10.82427 -10.64829 -10.53339 -10.10283 -9.93817 -9.79774 -9.55143 -9.02950 -8.64792 -8.59052 -6.93468 -5.96823 -3.41303 2.62948 2.98991 3.27025 3.35372 3.37002 3.85417 4.18213 4.33370 4.35675 4.44501 4.58223 4.59475 4.65802 4.77935 4.87597 5.00210 5.09249 5.13123 5.18382 5.20372 5.24940 5.26733 5.31723 5.39438 5.48782 5.51766 5.61652 5.62305 5.68920 5.79432 5.87835 5.89631 5.97803 6.03978 6.07686 6.13235 6.24026 6.29883 6.40578 6.45677 6.66716 6.68758 6.71503 7.07550 7.42239 7.49941 7.62304 8.23410 8.24191 8.99641 9.62264 10.17517 11.12325 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.002538 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.097214 B =11030.613388 C =12687.559463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.122 4.122 5 C 0.031 3.969 6 N -0.500 5.500 7 C 0.026 3.974 8 C 0.513 3.487 9 O -0.528 6.528 10 N -0.723 5.723 11 C 0.127 3.873 12 C -0.155 4.155 13 H 0.101 0.899 14 C 0.153 3.847 15 N -0.591 5.591 16 C -0.261 4.261 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.898 5.898 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.214 7.214 28 F -0.199 7.199 29 C 0.037 3.963 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.403 0.597 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.256 0.744 45 H 0.101 0.899 46 H 0.032 0.968 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.044 0.956 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 13.883 9.538 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.096 4.096 6 N -0.225 5.225 7 C -0.105 4.105 8 C 0.299 3.701 9 O -0.404 6.404 10 N -0.376 5.376 11 C 0.003 3.997 12 C -0.176 4.176 13 H 0.119 0.881 14 C 0.026 3.974 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.263 3.737 27 F -0.195 7.195 28 F -0.180 7.180 29 C -0.091 4.091 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.119 0.881 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.062 0.938 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.968 12.943 10.242 19.817 hybrid contribution 1.103 1.120 -1.269 2.021 sum -9.865 14.063 8.973 19.381 Atomic orbital electron populations 1.21824 0.94322 1.02241 1.01459 1.21999 0.96505 0.98902 0.94949 0.90941 1.22632 0.97991 0.98615 0.96745 1.23534 0.95392 1.00207 0.90512 1.64680 1.19327 1.36193 1.02252 1.22238 0.92213 0.97961 0.98107 1.20419 0.81003 0.82662 0.86050 1.90641 1.72152 1.57435 1.20162 1.45931 1.24416 1.44945 1.22296 1.21301 0.90461 0.92612 0.95352 1.22965 0.95563 1.00526 0.98567 0.88083 1.20910 0.90573 0.96896 0.89025 1.44107 1.17751 1.60906 1.08474 1.19182 1.32418 1.03246 0.84164 0.91266 1.25089 1.01758 0.94650 0.97850 1.70027 1.42179 1.05150 1.36806 0.86198 0.78409 0.78565 0.83394 1.20174 1.21422 1.21586 1.20847 0.93951 0.91396 0.89449 1.23271 0.95094 1.04150 0.99346 1.21029 0.92874 0.78992 0.80764 1.92954 1.90962 1.83465 1.52096 1.92969 1.83208 1.47963 1.93845 1.23052 0.98153 0.90914 0.96931 0.92066 0.92713 0.92731 0.91317 0.90562 0.86916 0.94581 0.91775 0.87445 0.76191 0.91157 0.90638 0.94909 0.91615 0.93348 0.88098 0.94940 0.89599 0.90536 0.93762 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.90 37.16 0.33 -0.62 16 2 C -0.10 -0.81 3.58 -89.26 -0.32 -1.13 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -1.08 6.61 -24.87 -0.16 -1.25 16 5 C 0.03 0.34 5.30 -1.89 -0.01 0.33 16 6 N -0.50 -5.56 5.26 -231.89 -1.22 -6.78 16 7 C 0.03 0.27 5.52 -4.98 -0.03 0.24 16 8 C 0.51 6.80 7.54 -10.98 -0.08 6.72 16 9 O -0.53 -8.79 13.52 5.55 0.08 -8.71 16 10 N -0.72 -9.06 5.33 -60.29 -0.32 -9.38 16 11 C 0.13 1.88 4.83 -4.04 -0.02 1.86 16 12 C -0.15 -2.47 2.03 -90.50 -0.18 -2.66 16 13 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 14 C 0.15 2.88 5.40 -3.71 -0.02 2.86 16 15 N -0.59 -13.49 2.99 -172.32 -0.52 -14.00 16 16 C -0.26 -6.53 9.58 -15.06 -0.14 -6.68 16 17 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 18 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 19 N -0.90 -24.60 11.19 55.49 0.62 -23.98 16 20 Si 0.90 20.30 29.59 -169.99 -5.03 15.27 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.17 3.77 5.11 -3.72 -0.02 3.75 16 25 C -0.18 -3.23 5.62 -26.61 -0.15 -3.38 16 26 C 0.30 5.25 1.63 -26.69 -0.04 5.21 16 27 F -0.21 -3.66 16.40 2.25 0.04 -3.62 16 28 F -0.20 -3.80 15.73 2.25 0.04 -3.76 16 29 C 0.04 0.32 6.36 -2.75 -0.02 0.31 16 30 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.11 1.56 5.97 -51.93 -0.31 1.25 16 36 H 0.04 0.40 8.02 -51.93 -0.42 -0.02 16 37 H 0.06 0.55 7.81 -51.93 -0.41 0.14 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 4.24 7.71 -40.82 -0.31 3.93 16 40 H 0.07 1.08 7.63 -51.93 -0.40 0.68 16 41 H 0.08 1.24 7.98 -51.93 -0.41 0.82 16 42 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 43 H 0.07 1.14 7.14 -51.93 -0.37 0.76 16 44 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.10 2.49 6.04 -51.92 -0.31 2.17 16 46 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 48 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 49 H 0.04 0.34 7.57 -51.93 -0.39 -0.05 16 50 H 0.08 0.68 7.68 -51.93 -0.40 0.28 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -29.48 390.92 -9.70 -39.18 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.32 Total: 4.25 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.96 Total: 5.64 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -1.44 Total: -54.14 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.07 Total: -7.39 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.48 -9.70 -39.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724378229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.633 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds