Wall clock time and date at job start Wed Apr 1 2020 03:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.27287 * 2 1 4 4 C 1.54586 * 110.39051 * 122.15412 * 2 1 3 5 5 C 1.54945 * 102.92285 * 140.91624 * 4 2 1 6 6 N 1.48536 * 103.22409 * 322.58222 * 5 4 2 7 7 C 1.46894 * 111.00177 * 159.72075 * 6 5 4 8 8 C 1.50704 * 109.46954 * 52.60472 * 7 6 5 9 9 O 1.21284 * 120.00013 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00086 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00211 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47072 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.50084 * 54.93600 * 12 11 10 14 14 C 1.53189 * 109.49698 * 294.83492 * 12 11 10 15 15 N 1.46932 * 108.77363 * 185.41424 * 14 12 11 16 16 C 1.36934 * 120.63025 * 233.63223 * 15 14 12 17 17 H 1.08003 * 120.00131 * 27.66336 * 16 15 14 18 18 C 1.38814 * 120.00227 * 207.66509 * 16 15 14 19 19 N 1.31622 * 119.99988 * 17.36956 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 197.37650 * 18 16 15 21 21 H 1.48499 * 109.47252 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47504 * 119.99596 * 20 18 16 23 23 H 1.48506 * 109.46915 * 239.99857 * 20 18 16 24 24 C 1.46921 * 118.73604 * 53.61547 * 15 14 12 25 25 C 1.53188 * 108.77537 * 306.38684 * 24 15 14 26 26 C 1.53039 * 109.31564 * 54.63866 * 25 24 15 27 27 F 1.39895 * 109.46068 * 178.61601 * 26 25 24 28 28 F 1.39899 * 109.44499 * 58.64851 * 26 25 24 29 29 C 1.47906 * 105.82066 * 39.20520 * 6 5 4 30 30 H 1.09000 * 109.47276 * 182.08363 * 1 2 3 31 31 H 1.09004 * 109.46548 * 302.08569 * 1 2 3 32 32 H 1.09006 * 109.47253 * 62.08349 * 1 2 3 33 33 H 1.09001 * 110.72328 * 259.26693 * 4 2 1 34 34 H 1.08993 * 110.73304 * 22.55543 * 4 2 1 35 35 H 1.09003 * 110.66737 * 204.14726 * 5 4 2 36 36 H 1.08995 * 110.66751 * 81.01748 * 5 4 2 37 37 H 1.08992 * 109.47356 * 292.60771 * 7 6 5 38 38 H 1.08994 * 109.47193 * 172.60214 * 7 6 5 39 39 H 0.97004 * 119.99787 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.47247 * 300.00440 * 11 10 8 41 41 H 1.09004 * 109.46696 * 59.99789 * 11 10 8 42 42 H 1.08993 * 109.58771 * 305.20573 * 14 12 11 43 43 H 1.09001 * 109.58434 * 65.63430 * 14 12 11 44 44 H 0.96989 * 120.00253 * 180.02562 * 19 18 16 45 45 H 1.09008 * 109.58598 * 186.60194 * 24 15 14 46 46 H 1.08996 * 109.59169 * 66.18155 * 24 15 14 47 47 H 1.08998 * 109.49862 * 294.68262 * 25 24 15 48 48 H 1.09003 * 109.49597 * 174.59155 * 25 24 15 49 49 H 1.08998 * 109.91042 * 94.02303 * 29 6 5 50 50 H 1.08995 * 109.91709 * 215.31699 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0686 -0.7712 1.2267 5 6 3.2882 -1.5327 0.6492 6 7 2.8333 -1.9216 -0.7102 7 6 3.9766 -2.2223 -1.5820 8 6 4.8699 -3.2321 -0.9086 9 8 4.5825 -3.6589 0.1897 10 7 5.9881 -3.6610 -1.5268 11 6 6.8567 -4.6423 -0.8719 12 6 8.0475 -4.9556 -1.7799 13 1 8.5581 -4.0293 -2.0429 14 6 7.5511 -5.6461 -3.0541 15 7 8.7138 -6.0560 -3.8535 16 6 8.8256 -5.6807 -5.1656 17 1 8.3581 -4.7695 -5.5085 18 6 9.5399 -6.4715 -6.0553 19 7 9.8156 -7.7217 -5.7495 20 14 10.1099 -5.7614 -7.6863 21 1 9.6752 -4.3451 -7.7885 22 1 11.5910 -5.8321 -7.7664 23 1 9.5160 -6.5427 -8.8009 24 6 9.7543 -6.8758 -3.2180 25 6 10.2260 -6.1716 -1.9420 26 6 9.0186 -5.8838 -1.0467 27 9 9.4496 -5.2690 0.1337 28 9 8.3715 -7.0850 -0.7373 29 6 2.0644 -0.7671 -1.2237 30 1 -0.3634 -1.0270 0.0374 31 1 -0.3632 0.5459 0.8708 32 1 -0.3634 0.4812 -0.9081 33 1 2.3810 -0.0803 2.0099 34 1 1.3207 -1.4692 1.6025 35 1 3.5090 -2.4161 1.2484 36 1 4.1580 -0.8785 0.5914 37 1 4.5396 -1.3084 -1.7712 38 1 3.6161 -2.6291 -2.5268 39 1 6.2181 -3.3194 -2.4050 40 1 7.2176 -4.2350 0.0725 41 1 6.2937 -5.5562 -0.6819 42 1 6.9625 -6.5241 -2.7883 43 1 6.9378 -4.9530 -3.6300 44 1 10.3149 -8.2741 -6.3709 45 1 10.5948 -6.9942 -3.9020 46 1 9.3454 -7.8541 -2.9657 47 1 10.7164 -5.2340 -2.2039 48 1 10.9282 -6.8138 -1.4104 49 1 2.7147 -0.1203 -1.8125 50 1 1.2325 -1.1173 -1.8348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724378229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:15 Heat of formation + Delta-G solvation = -131.518982 kcal Electronic energy + Delta-G solvation = -31565.944180 eV Core-core repulsion = 27070.309352 eV Total energy + Delta-G solvation = -4495.634828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.00198 -47.95960 -41.19694 -39.59863 -38.82425 -36.37566 -34.43916 -34.27195 -32.43513 -31.99725 -30.66519 -28.80351 -27.17997 -26.75327 -25.51525 -24.05938 -23.10569 -22.33212 -21.57081 -21.05725 -20.92770 -19.02727 -18.34106 -18.15263 -17.73682 -17.08760 -17.04660 -16.95559 -16.64554 -16.26098 -16.09077 -15.78771 -15.37762 -14.98483 -14.88020 -14.69176 -14.61742 -14.32562 -14.26818 -14.25734 -14.06182 -13.81547 -13.51628 -13.26202 -13.17909 -13.05556 -13.05515 -12.94026 -12.61421 -12.52201 -12.34648 -12.25142 -12.15959 -11.90587 -11.72934 -11.66865 -11.62613 -11.50600 -11.28850 -10.64583 -10.57784 -10.15109 -9.37009 -8.81113 -7.90665 -5.37177 1.50044 1.53386 1.60382 1.62471 1.96086 2.49777 2.78737 3.07603 3.16652 3.23128 3.29104 3.51568 3.56629 3.68385 3.71079 3.90626 3.93257 3.99147 4.10215 4.25316 4.27188 4.35492 4.41507 4.50250 4.55702 4.57345 4.66047 4.67687 4.68508 4.76313 4.85019 4.88285 4.88673 4.95683 5.05315 5.09579 5.18269 5.22471 5.26997 5.29129 5.42590 5.45941 5.58706 5.66846 5.89596 5.98738 6.33832 6.52395 7.08379 7.23404 7.76257 8.28973 9.17688 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.002538 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.097214 B =11030.613388 C =12687.559463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.032 3.968 6 N -0.522 5.522 7 C 0.031 3.969 8 C 0.510 3.490 9 O -0.566 6.566 10 N -0.714 5.714 11 C 0.139 3.861 12 C -0.137 4.137 13 H 0.120 0.880 14 C 0.155 3.845 15 N -0.606 5.606 16 C -0.261 4.261 17 H 0.082 0.918 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.293 1.293 23 H -0.298 1.298 24 C 0.177 3.823 25 C -0.168 4.168 26 C 0.298 3.702 27 F -0.207 7.207 28 F -0.211 7.211 29 C 0.037 3.963 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.014 0.986 43 H 0.085 0.915 44 H 0.251 0.749 45 H 0.074 0.926 46 H 0.003 0.997 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.058 0.942 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 16.896 9.086 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.095 4.095 6 N -0.247 5.247 7 C -0.100 4.100 8 C 0.297 3.703 9 O -0.445 6.445 10 N -0.368 5.368 11 C 0.014 3.986 12 C -0.158 4.158 13 H 0.138 0.862 14 C 0.029 3.971 15 N -0.328 5.328 16 C -0.390 4.390 17 H 0.100 0.900 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.796 3.204 21 H -0.184 1.184 22 H -0.220 1.220 23 H -0.225 1.225 24 C 0.051 3.949 25 C -0.208 4.208 26 C 0.261 3.739 27 F -0.188 7.188 28 F -0.192 7.192 29 C -0.090 4.090 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.021 0.979 47 H 0.119 0.881 48 H 0.109 0.891 49 H 0.077 0.923 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.580 15.996 9.788 22.040 hybrid contribution 1.245 0.143 -1.072 1.650 sum -10.335 16.140 8.715 21.053 Atomic orbital electron populations 1.21796 0.93594 1.01798 1.02359 1.22015 0.97091 0.99150 0.93757 0.89660 1.22611 0.96869 0.98594 0.97638 1.23375 0.96403 0.99032 0.90691 1.64641 1.19919 1.37773 1.02379 1.22281 0.91784 0.97944 0.97973 1.21042 0.81009 0.82649 0.85591 1.90648 1.73003 1.58835 1.21971 1.45822 1.24017 1.44244 1.22688 1.21017 0.90007 0.92449 0.95151 1.22763 0.95716 1.00377 0.96952 0.86193 1.20968 0.89469 0.96745 0.89933 1.44343 1.19151 1.60822 1.08491 1.19595 1.31240 1.03216 0.84971 0.90031 1.25835 1.02646 0.94912 1.01062 1.70182 1.43582 1.06493 1.37870 0.85204 0.77285 0.78478 0.79406 1.18388 1.21995 1.22550 1.20564 0.92938 0.90811 0.90621 1.23096 0.95624 1.04622 0.97446 1.21093 0.92896 0.78927 0.80949 1.92965 1.90923 1.83237 1.51703 1.92953 1.83423 1.48876 1.93944 1.23117 0.98163 0.90382 0.97372 0.93162 0.92014 0.91669 0.90153 0.91446 0.90142 0.94549 0.89301 0.85761 0.74694 0.91349 0.92570 0.96828 0.89701 0.94011 0.90733 0.97905 0.88134 0.89085 0.92347 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.90 71.98 0.64 -0.93 16 2 C -0.10 -1.34 3.58 -9.92 -0.04 -1.38 16 3 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.12 -1.98 6.61 31.80 0.21 -1.77 16 5 C 0.03 0.71 5.30 86.65 0.46 1.17 16 6 N -0.52 -10.82 5.26 -887.57 -4.67 -15.49 16 7 C 0.03 0.56 5.52 85.56 0.47 1.04 16 8 C 0.51 12.87 7.54 87.66 0.66 13.53 16 9 O -0.57 -18.92 13.52 -3.04 -0.04 -18.96 16 10 N -0.71 -16.54 5.33 -463.05 -2.47 -19.01 16 11 C 0.14 3.95 4.83 86.38 0.42 4.37 16 12 C -0.14 -4.14 2.03 -10.72 -0.02 -4.16 16 13 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 14 C 0.15 5.66 5.40 86.36 0.47 6.12 16 15 N -0.61 -27.37 2.99 -699.11 -2.09 -29.47 16 16 C -0.26 -12.79 9.58 84.03 0.81 -11.98 16 17 H 0.08 3.74 7.89 -2.91 -0.02 3.72 16 18 C -0.05 -2.53 4.91 84.86 0.42 -2.11 16 19 N -0.94 -52.41 11.19 21.65 0.24 -52.17 16 20 Si 0.97 41.54 29.59 68.60 2.03 43.57 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 24 C 0.18 7.97 5.11 86.36 0.44 8.41 16 25 C -0.17 -5.91 5.62 30.67 0.17 -5.74 16 26 C 0.30 10.08 1.63 30.62 0.05 10.13 16 27 F -0.21 -6.71 16.40 44.97 0.74 -5.97 16 28 F -0.21 -8.06 15.73 44.97 0.71 -7.35 16 29 C 0.04 0.55 6.36 86.45 0.55 1.10 16 30 H 0.05 0.68 8.11 -2.39 -0.02 0.66 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 35 H 0.08 2.30 5.97 -2.39 -0.01 2.28 16 36 H 0.04 0.76 8.02 -2.39 -0.02 0.75 16 37 H 0.09 1.20 7.81 -2.39 -0.02 1.18 16 38 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.42 7.52 7.71 -92.71 -0.71 6.81 16 40 H 0.07 2.02 7.63 -2.39 -0.02 2.00 16 41 H 0.06 1.84 7.98 -2.39 -0.02 1.82 16 42 H 0.01 0.56 7.92 -2.39 -0.02 0.54 16 43 H 0.08 2.74 7.14 -2.39 -0.02 2.73 16 44 H 0.25 13.68 8.31 -92.72 -0.77 12.91 16 45 H 0.07 3.77 6.04 -2.38 -0.01 3.75 16 46 H 0.00 0.14 7.92 -2.39 -0.02 0.12 16 47 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 48 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 49 H 0.06 0.70 7.57 -2.39 -0.02 0.69 16 50 H 0.08 1.21 7.68 -2.39 -0.02 1.19 16 Total: -1.00 -64.70 390.92 0.37 -64.33 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.22 Total: 22.73 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 5.70 Total: 17.79 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -8.99 Total: -116.13 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.04 Total: -18.96 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 1.44 Total: -13.32 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -64.70 0.37 -64.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724378229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.191 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds