Wall clock time and date at job start Wed Apr 1 2020 03:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.64091 * 2 1 4 4 C 1.54590 * 110.72378 * 123.15224 * 2 1 3 5 5 C 1.53995 * 105.14051 * 140.49662 * 4 2 1 6 6 N 1.47902 * 107.05522 * 1.22257 * 5 4 2 7 7 C 1.46903 * 110.99838 * 214.15636 * 6 5 4 8 8 C 1.50702 * 109.46927 * 176.50356 * 7 6 5 9 9 O 1.21280 * 119.99878 * 6.21780 * 8 7 6 10 10 N 1.34782 * 119.99508 * 186.21199 * 8 7 6 11 11 C 1.46498 * 119.99211 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46701 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.52592 * 304.91796 * 12 11 10 14 14 C 1.53189 * 109.49916 * 65.00012 * 12 11 10 15 15 N 1.46926 * 108.77733 * 174.58429 * 14 12 11 16 16 C 1.36939 * 120.62628 * 126.37083 * 15 14 12 17 17 H 1.07992 * 120.00127 * 331.78844 * 16 15 14 18 18 C 1.38812 * 119.99788 * 151.79709 * 16 15 14 19 19 N 1.31621 * 120.00097 * 343.04569 * 18 16 15 20 20 Si 1.86800 * 120.00408 * 163.05109 * 18 16 15 21 21 H 1.48507 * 109.47026 * 59.99375 * 20 18 16 22 22 H 1.48491 * 109.47554 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46694 * 299.99769 * 20 18 16 24 24 C 1.46922 * 118.74139 * 306.39223 * 15 14 12 25 25 C 1.53201 * 108.77358 * 53.60881 * 24 15 14 26 26 C 1.53040 * 109.30771 * 305.36265 * 25 24 15 27 27 F 1.39896 * 109.46428 * 301.34258 * 26 25 24 28 28 F 1.39906 * 109.45577 * 181.38832 * 26 25 24 29 29 C 1.48531 * 105.82294 * 334.67028 * 6 5 4 30 30 H 1.08990 * 109.47063 * 298.30093 * 1 2 3 31 31 H 1.09000 * 109.46751 * 58.30074 * 1 2 3 32 32 H 1.09003 * 109.46980 * 178.29755 * 1 2 3 33 33 H 1.09000 * 110.31091 * 21.58110 * 4 2 1 34 34 H 1.09006 * 110.39256 * 259.45538 * 4 2 1 35 35 H 1.09002 * 109.91545 * 241.87237 * 5 4 2 36 36 H 1.08996 * 110.08146 * 120.67094 * 5 4 2 37 37 H 1.09000 * 109.46905 * 56.50523 * 7 6 5 38 38 H 1.08997 * 109.47207 * 296.50815 * 7 6 5 39 39 H 0.96991 * 120.00248 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.47412 * 60.00379 * 11 10 8 41 41 H 1.08996 * 109.47589 * 300.00088 * 11 10 8 42 42 H 1.09000 * 109.58991 * 294.37314 * 14 12 11 43 43 H 1.09001 * 109.58531 * 54.65841 * 14 12 11 44 44 H 0.96994 * 120.00569 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.58877 * 173.39217 * 24 15 14 46 46 H 1.08998 * 109.58747 * 293.81935 * 24 15 14 47 47 H 1.08998 * 109.49832 * 65.31786 * 25 24 15 48 48 H 1.09001 * 109.49125 * 185.38309 * 25 24 15 49 49 H 1.08998 * 110.66696 * 157.63883 * 29 6 5 50 50 H 1.09000 * 110.66637 * 280.77486 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0771 -0.7907 1.2105 5 6 3.2922 -1.5661 0.6686 6 7 3.4360 -1.2049 -0.7585 7 6 3.9294 -2.3448 -1.5429 8 6 3.9814 -1.9664 -3.0007 9 8 3.7498 -0.8252 -3.3396 10 7 4.2854 -2.8963 -3.9277 11 6 4.3365 -2.5283 -5.3448 12 6 4.7003 -3.7587 -6.1784 13 1 5.6319 -4.1869 -5.8084 14 6 3.5810 -4.7988 -6.0702 15 7 3.8836 -5.9153 -6.9761 16 6 3.9124 -7.2029 -6.5110 17 1 4.1672 -7.3991 -5.4801 18 6 3.6142 -8.2560 -7.3648 19 7 2.9903 -8.0260 -8.5007 20 14 4.0983 -9.9998 -6.9018 21 1 3.4378 -10.3745 -5.6255 22 1 3.6693 -10.9338 -7.9734 23 1 5.5721 -10.0773 -6.7377 24 6 4.1552 -5.6239 -8.3903 25 6 5.2683 -4.5744 -8.4725 26 6 4.8721 -3.3506 -7.6434 27 9 3.6668 -2.8303 -8.1268 28 9 5.8724 -2.3773 -7.7419 29 6 2.0822 -0.7939 -1.2106 30 1 -0.3633 0.4872 0.9047 31 1 -0.3633 0.5400 -0.8744 32 1 -0.3633 -1.0272 -0.0305 33 1 1.3219 -1.4830 1.5828 34 1 2.3864 -0.1078 2.0019 35 1 3.1214 -2.6384 0.7648 36 1 4.1913 -1.2830 1.2158 37 1 3.2586 -3.1938 -1.4115 38 1 4.9287 -2.6152 -1.2017 39 1 4.4704 -3.8090 -3.6567 40 1 5.0891 -1.7537 -5.4922 41 1 3.3624 -2.1528 -5.6581 42 1 3.5208 -5.1657 -5.0456 43 1 2.6312 -4.3442 -6.3519 44 1 2.7816 -8.7618 -9.0971 45 1 4.4740 -6.5350 -8.8965 46 1 3.2527 -5.2372 -8.8636 47 1 6.1945 -4.9950 -8.0809 48 1 5.4136 -4.2790 -9.5116 49 1 2.1482 -0.1554 -2.0915 50 1 1.4624 -1.6674 -1.4128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724378231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:21 Heat of formation + Delta-G solvation = -115.812869 kcal Electronic energy + Delta-G solvation = -31679.837106 eV Core-core repulsion = 27184.883346 eV Total energy + Delta-G solvation = -4494.953760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.53895 -46.49027 -40.15197 -38.66654 -37.32754 -34.98435 -33.63768 -32.71336 -31.01288 -30.29508 -29.95946 -27.75852 -25.94930 -25.26337 -24.61969 -22.49444 -21.65211 -21.21129 -20.42497 -20.36569 -19.55694 -17.53816 -16.96711 -16.81545 -16.41366 -16.10880 -15.79765 -15.61914 -15.43375 -15.05421 -14.75495 -14.52884 -14.12869 -13.79429 -13.61654 -13.52218 -13.29488 -13.20416 -13.08943 -12.87159 -12.80344 -12.74596 -12.35066 -12.21748 -12.08820 -11.71652 -11.67991 -11.58865 -11.42162 -11.26122 -11.14500 -10.88970 -10.83333 -10.74536 -10.65166 -10.57825 -10.10866 -9.97157 -9.84677 -9.60078 -9.01107 -8.64519 -8.60488 -6.93153 -5.97213 -3.42457 2.65967 2.99821 3.27549 3.34518 3.34960 3.83066 4.19143 4.33790 4.35789 4.44219 4.58985 4.65067 4.67691 4.79759 4.88211 4.95273 5.04178 5.12392 5.18781 5.22639 5.25047 5.27084 5.39666 5.44186 5.46495 5.52556 5.54467 5.62916 5.67400 5.74690 5.87049 5.90175 5.98901 6.06476 6.08972 6.13290 6.24353 6.29564 6.40461 6.43651 6.65831 6.66334 6.69355 7.07192 7.41706 7.52384 7.61187 8.23460 8.26446 8.99257 9.61707 10.17292 11.11899 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.002716 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.711633 B =10307.214733 C =11776.551719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.083 0.917 4 C -0.127 4.127 5 C 0.034 3.966 6 N -0.500 5.500 7 C 0.027 3.973 8 C 0.513 3.487 9 O -0.525 6.525 10 N -0.724 5.724 11 C 0.127 3.873 12 C -0.155 4.155 13 H 0.102 0.898 14 C 0.154 3.846 15 N -0.590 5.590 16 C -0.264 4.264 17 H 0.068 0.932 18 C 0.008 3.992 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.199 7.199 28 F -0.213 7.213 29 C 0.037 3.963 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.403 0.597 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.258 0.742 45 H 0.100 0.900 46 H 0.032 0.968 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.102 0.898 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 10.818 14.292 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.165 4.165 5 C -0.093 4.093 6 N -0.224 5.224 7 C -0.105 4.105 8 C 0.298 3.702 9 O -0.401 6.401 10 N -0.378 5.378 11 C 0.003 3.997 12 C -0.177 4.177 13 H 0.120 0.880 14 C 0.027 3.973 15 N -0.312 5.312 16 C -0.393 4.393 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.209 1.209 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.264 3.736 27 F -0.180 7.180 28 F -0.194 7.194 29 C -0.091 4.091 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.238 0.762 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.120 0.880 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.981 11.941 13.818 18.289 hybrid contribution -0.141 -1.989 0.256 2.011 sum 0.840 9.952 14.074 17.257 Atomic orbital electron populations 1.21769 0.94542 1.01874 1.01897 1.22077 0.95362 0.99952 0.94232 0.89902 1.22482 0.96899 0.99022 0.98111 1.22909 0.98961 0.98260 0.89217 1.64600 1.24718 1.31589 1.01541 1.22202 1.03042 0.93557 0.91657 1.20404 0.76877 0.85442 0.87493 1.90679 1.47903 1.19572 1.81929 1.45939 1.71807 1.13156 1.06853 1.21292 1.02665 0.96339 0.79402 1.22969 1.04747 0.97735 0.92204 0.88022 1.20895 0.92754 0.88025 0.95658 1.44075 1.80400 1.02017 1.04672 1.19098 1.41646 0.81719 0.96808 0.91389 1.25096 0.97901 0.98402 0.97799 1.70003 1.40555 1.31426 1.12196 0.86329 0.78528 0.84017 0.77618 1.20762 1.21518 1.20857 1.20840 0.92545 0.96039 0.86161 1.23273 1.04037 0.95267 0.99303 1.21027 0.72753 0.84536 0.95324 1.92965 1.46844 1.88420 1.89799 1.92960 1.62213 1.66967 1.97298 1.23477 0.87564 0.99011 0.99023 0.92492 0.92297 0.92708 0.91382 0.91031 0.93642 0.90173 0.91733 0.87588 0.76240 0.91058 0.90788 0.91707 0.95021 0.93226 0.88170 0.94945 0.89576 0.90532 0.88002 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.16 37.16 0.34 -0.77 16 2 C -0.10 -0.88 3.65 -88.76 -0.32 -1.20 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -0.98 6.51 -25.38 -0.17 -1.15 16 5 C 0.03 0.29 6.70 -2.75 -0.02 0.28 16 6 N -0.50 -5.60 5.11 -231.89 -1.19 -6.78 16 7 C 0.03 0.28 5.31 -4.97 -0.03 0.25 16 8 C 0.51 6.90 7.46 -10.98 -0.08 6.81 16 9 O -0.53 -8.99 14.29 5.56 0.08 -8.91 16 10 N -0.72 -9.17 5.33 -60.29 -0.32 -9.49 16 11 C 0.13 1.90 4.83 -4.04 -0.02 1.88 16 12 C -0.15 -2.49 2.03 -90.50 -0.18 -2.68 16 13 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.15 2.89 5.40 -3.71 -0.02 2.87 16 15 N -0.59 -13.46 2.99 -172.32 -0.52 -13.98 16 16 C -0.26 -6.60 9.58 -15.06 -0.14 -6.74 16 17 H 0.07 1.63 7.88 -52.49 -0.41 1.22 16 18 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 19 N -0.90 -24.57 11.20 55.49 0.62 -23.95 16 20 Si 0.91 20.27 29.59 -169.99 -5.03 15.24 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.17 3.78 5.10 -3.71 -0.02 3.77 16 25 C -0.18 -3.24 5.62 -26.61 -0.15 -3.39 16 26 C 0.30 5.28 1.63 -26.69 -0.04 5.24 16 27 F -0.20 -3.81 15.73 2.25 0.04 -3.78 16 28 F -0.21 -3.69 16.41 2.25 0.04 -3.65 16 29 C 0.04 0.42 5.03 -1.90 -0.01 0.41 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.35 7.68 -51.93 -0.40 -0.05 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.58 7.98 -51.93 -0.41 0.16 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.40 4.28 7.70 -40.82 -0.31 3.97 16 40 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 41 H 0.07 1.21 7.97 -51.93 -0.41 0.80 16 42 H 0.06 1.12 7.13 -51.93 -0.37 0.75 16 43 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.10 2.46 6.06 -51.93 -0.31 2.15 16 46 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 47 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 48 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.10 1.42 6.43 -51.93 -0.33 1.08 16 50 H 0.04 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -29.68 392.68 -9.68 -39.37 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.37 Total: 4.32 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.95 Total: 5.69 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -1.40 Total: -54.21 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.07 Total: -7.43 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.68 -9.68 -39.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724378231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.447 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds