Wall clock time and date at job start Wed Apr 1 2020 03:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.64091 * 2 1 4 4 C 1.54590 * 110.72378 * 123.15224 * 2 1 3 5 5 C 1.53995 * 105.14051 * 140.49662 * 4 2 1 6 6 N 1.47902 * 107.05522 * 1.22257 * 5 4 2 7 7 C 1.46903 * 110.99838 * 214.15636 * 6 5 4 8 8 C 1.50702 * 109.46927 * 176.50356 * 7 6 5 9 9 O 1.21280 * 119.99878 * 6.21780 * 8 7 6 10 10 N 1.34782 * 119.99508 * 186.21199 * 8 7 6 11 11 C 1.46498 * 119.99211 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46701 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.52592 * 304.91796 * 12 11 10 14 14 C 1.53189 * 109.49916 * 65.00012 * 12 11 10 15 15 N 1.46926 * 108.77733 * 174.58429 * 14 12 11 16 16 C 1.36939 * 120.62628 * 126.37083 * 15 14 12 17 17 H 1.07992 * 120.00127 * 331.78844 * 16 15 14 18 18 C 1.38812 * 119.99788 * 151.79709 * 16 15 14 19 19 N 1.31621 * 120.00097 * 343.04569 * 18 16 15 20 20 Si 1.86800 * 120.00408 * 163.05109 * 18 16 15 21 21 H 1.48507 * 109.47026 * 59.99375 * 20 18 16 22 22 H 1.48491 * 109.47554 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46694 * 299.99769 * 20 18 16 24 24 C 1.46922 * 118.74139 * 306.39223 * 15 14 12 25 25 C 1.53201 * 108.77358 * 53.60881 * 24 15 14 26 26 C 1.53040 * 109.30771 * 305.36265 * 25 24 15 27 27 F 1.39896 * 109.46428 * 301.34258 * 26 25 24 28 28 F 1.39906 * 109.45577 * 181.38832 * 26 25 24 29 29 C 1.48531 * 105.82294 * 334.67028 * 6 5 4 30 30 H 1.08990 * 109.47063 * 298.30093 * 1 2 3 31 31 H 1.09000 * 109.46751 * 58.30074 * 1 2 3 32 32 H 1.09003 * 109.46980 * 178.29755 * 1 2 3 33 33 H 1.09000 * 110.31091 * 21.58110 * 4 2 1 34 34 H 1.09006 * 110.39256 * 259.45538 * 4 2 1 35 35 H 1.09002 * 109.91545 * 241.87237 * 5 4 2 36 36 H 1.08996 * 110.08146 * 120.67094 * 5 4 2 37 37 H 1.09000 * 109.46905 * 56.50523 * 7 6 5 38 38 H 1.08997 * 109.47207 * 296.50815 * 7 6 5 39 39 H 0.96991 * 120.00248 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.47412 * 60.00379 * 11 10 8 41 41 H 1.08996 * 109.47589 * 300.00088 * 11 10 8 42 42 H 1.09000 * 109.58991 * 294.37314 * 14 12 11 43 43 H 1.09001 * 109.58531 * 54.65841 * 14 12 11 44 44 H 0.96994 * 120.00569 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.58877 * 173.39217 * 24 15 14 46 46 H 1.08998 * 109.58747 * 293.81935 * 24 15 14 47 47 H 1.08998 * 109.49832 * 65.31786 * 25 24 15 48 48 H 1.09001 * 109.49125 * 185.38309 * 25 24 15 49 49 H 1.08998 * 110.66696 * 157.63883 * 29 6 5 50 50 H 1.09000 * 110.66637 * 280.77486 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0771 -0.7907 1.2105 5 6 3.2922 -1.5661 0.6686 6 7 3.4360 -1.2049 -0.7585 7 6 3.9294 -2.3448 -1.5429 8 6 3.9814 -1.9664 -3.0007 9 8 3.7498 -0.8252 -3.3396 10 7 4.2854 -2.8963 -3.9277 11 6 4.3365 -2.5283 -5.3448 12 6 4.7003 -3.7587 -6.1784 13 1 5.6319 -4.1869 -5.8084 14 6 3.5810 -4.7988 -6.0702 15 7 3.8836 -5.9153 -6.9761 16 6 3.9124 -7.2029 -6.5110 17 1 4.1672 -7.3991 -5.4801 18 6 3.6142 -8.2560 -7.3648 19 7 2.9903 -8.0260 -8.5007 20 14 4.0983 -9.9998 -6.9018 21 1 3.4378 -10.3745 -5.6255 22 1 3.6693 -10.9338 -7.9734 23 1 5.5721 -10.0773 -6.7377 24 6 4.1552 -5.6239 -8.3903 25 6 5.2683 -4.5744 -8.4725 26 6 4.8721 -3.3506 -7.6434 27 9 3.6668 -2.8303 -8.1268 28 9 5.8724 -2.3773 -7.7419 29 6 2.0822 -0.7939 -1.2106 30 1 -0.3633 0.4872 0.9047 31 1 -0.3633 0.5400 -0.8744 32 1 -0.3633 -1.0272 -0.0305 33 1 1.3219 -1.4830 1.5828 34 1 2.3864 -0.1078 2.0019 35 1 3.1214 -2.6384 0.7648 36 1 4.1913 -1.2830 1.2158 37 1 3.2586 -3.1938 -1.4115 38 1 4.9287 -2.6152 -1.2017 39 1 4.4704 -3.8090 -3.6567 40 1 5.0891 -1.7537 -5.4922 41 1 3.3624 -2.1528 -5.6581 42 1 3.5208 -5.1657 -5.0456 43 1 2.6312 -4.3442 -6.3519 44 1 2.7816 -8.7618 -9.0971 45 1 4.4740 -6.5350 -8.8965 46 1 3.2527 -5.2372 -8.8636 47 1 6.1945 -4.9950 -8.0809 48 1 5.4136 -4.2790 -9.5116 49 1 2.1482 -0.1554 -2.0915 50 1 1.4624 -1.6674 -1.4128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724378231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:20 Heat of formation + Delta-G solvation = -134.618272 kcal Electronic energy + Delta-G solvation = -31680.652569 eV Core-core repulsion = 27184.883346 eV Total energy + Delta-G solvation = -4495.769223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.00315 -47.96004 -41.14169 -39.60842 -38.82856 -36.35593 -34.48430 -34.29663 -32.42127 -31.99709 -30.71608 -28.69012 -27.21605 -26.85531 -25.64369 -24.05809 -23.04920 -22.14315 -21.52082 -21.07638 -21.04478 -19.02687 -18.35363 -18.18079 -17.65554 -17.16565 -16.98685 -16.86418 -16.70936 -16.55816 -15.91228 -15.73154 -15.38293 -15.14313 -14.88035 -14.77114 -14.59783 -14.37696 -14.28138 -14.13879 -13.87227 -13.81675 -13.52270 -13.27431 -13.19318 -13.14667 -13.04893 -12.96462 -12.77116 -12.55346 -12.32081 -12.25733 -12.18199 -11.91453 -11.80476 -11.66313 -11.59601 -11.41648 -11.32327 -10.78330 -10.56202 -10.15490 -9.39222 -8.80598 -7.90892 -5.38204 1.51489 1.53880 1.60029 1.61443 1.95995 2.49692 2.78433 3.04556 3.16435 3.22928 3.28999 3.51197 3.56332 3.63851 3.74384 3.87616 3.90966 4.04696 4.09864 4.24811 4.27854 4.31583 4.38822 4.49058 4.53375 4.55535 4.61388 4.66153 4.75640 4.77123 4.83258 4.84038 4.86509 4.88174 5.03294 5.08223 5.09433 5.24328 5.27785 5.29293 5.37696 5.40935 5.58162 5.65934 5.87127 5.95533 6.33656 6.53287 7.08107 7.23692 7.75856 8.28879 9.17160 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.002716 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.711633 B =10307.214733 C =11776.551719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.034 3.966 6 N -0.521 5.521 7 C 0.032 3.968 8 C 0.510 3.490 9 O -0.567 6.567 10 N -0.715 5.715 11 C 0.139 3.861 12 C -0.137 4.137 13 H 0.120 0.880 14 C 0.156 3.844 15 N -0.605 5.605 16 C -0.265 4.265 17 H 0.081 0.919 18 C -0.046 4.046 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.274 1.274 22 H -0.301 1.301 23 H -0.275 1.275 24 C 0.177 3.823 25 C -0.168 4.168 26 C 0.298 3.702 27 F -0.211 7.211 28 F -0.207 7.207 29 C 0.038 3.962 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.013 0.987 44 H 0.251 0.749 45 H 0.074 0.926 46 H 0.003 0.997 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 10.350 16.964 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.092 0.908 4 C -0.160 4.160 5 C -0.094 4.094 6 N -0.246 5.246 7 C -0.099 4.099 8 C 0.297 3.703 9 O -0.445 6.445 10 N -0.369 5.369 11 C 0.014 3.986 12 C -0.159 4.159 13 H 0.138 0.862 14 C 0.030 3.970 15 N -0.327 5.327 16 C -0.395 4.395 17 H 0.099 0.901 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.200 1.200 22 H -0.227 1.227 23 H -0.201 1.201 24 C 0.051 3.949 25 C -0.208 4.208 26 C 0.261 3.739 27 F -0.192 7.192 28 F -0.188 7.188 29 C -0.090 4.090 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.253 0.747 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.031 0.969 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.118 0.882 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.189 11.472 16.529 20.239 hybrid contribution -0.533 -1.773 -0.588 1.943 sum 1.656 9.699 15.941 18.734 Atomic orbital electron populations 1.21745 0.93625 1.02057 1.02314 1.22056 0.96122 0.99340 0.94001 0.90818 1.22484 0.96839 0.99159 0.97549 1.22989 0.99676 0.99188 0.87503 1.64562 1.24476 1.32531 1.03046 1.22255 1.04834 0.93796 0.89035 1.21054 0.75643 0.84767 0.88851 1.90675 1.49662 1.21411 1.82739 1.45829 1.71457 1.13840 1.05761 1.21010 1.01492 0.95500 0.80616 1.22770 1.04351 0.97216 0.91526 0.86185 1.20948 0.92872 0.87421 0.95764 1.44307 1.80735 1.02510 1.05170 1.19528 1.40053 0.82636 0.97251 0.90105 1.25843 0.98458 1.01925 0.98007 1.70166 1.42505 1.31959 1.13434 0.85326 0.78364 0.79630 0.76992 1.19976 1.22732 1.20061 1.20560 0.92625 0.95856 0.85843 1.23100 1.02742 0.94268 1.00690 1.21095 0.72406 0.84311 0.96046 1.92951 1.47649 1.88566 1.90035 1.92970 1.61870 1.66680 1.97326 1.23340 0.88198 0.98636 0.98814 0.91027 0.93028 0.92525 0.90253 0.89913 0.92323 0.89377 0.89798 0.85185 0.74706 0.91420 0.92609 0.89805 0.96881 0.93970 0.90772 0.97876 0.88154 0.89059 0.91379 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.16 71.98 0.66 -1.35 16 2 C -0.10 -1.65 3.65 -9.59 -0.03 -1.68 16 3 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.12 -1.60 6.51 31.47 0.20 -1.39 16 5 C 0.03 0.49 6.70 86.45 0.58 1.06 16 6 N -0.52 -10.87 5.11 -887.57 -4.54 -15.41 16 7 C 0.03 0.58 5.31 85.56 0.45 1.04 16 8 C 0.51 13.13 7.46 87.66 0.65 13.79 16 9 O -0.57 -19.55 14.29 -3.03 -0.04 -19.59 16 10 N -0.71 -16.84 5.33 -463.05 -2.47 -19.31 16 11 C 0.14 4.01 4.83 86.38 0.42 4.43 16 12 C -0.14 -4.20 2.03 -10.72 -0.02 -4.22 16 13 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 14 C 0.16 5.71 5.40 86.36 0.47 6.17 16 15 N -0.60 -27.35 2.99 -699.11 -2.09 -29.44 16 16 C -0.27 -13.02 9.58 84.03 0.81 -12.21 16 17 H 0.08 3.70 7.88 -2.91 -0.02 3.68 16 18 C -0.05 -2.39 4.91 84.86 0.42 -1.98 16 19 N -0.94 -52.28 11.20 21.65 0.24 -52.03 16 20 Si 0.97 41.41 29.59 68.60 2.03 43.44 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 C 0.18 7.99 5.10 86.37 0.44 8.43 16 25 C -0.17 -5.94 5.62 30.67 0.17 -5.76 16 26 C 0.30 10.15 1.63 30.62 0.05 10.20 16 27 F -0.21 -8.08 15.73 44.97 0.71 -7.37 16 28 F -0.21 -6.80 16.41 44.97 0.74 -6.07 16 29 C 0.04 0.85 5.03 86.65 0.44 1.29 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.08 0.87 7.85 -2.39 -0.02 0.85 16 34 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.06 0.70 7.68 -2.39 -0.02 0.68 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.23 7.98 -2.39 -0.02 1.21 16 38 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.42 7.64 7.70 -92.72 -0.71 6.93 16 40 H 0.07 2.05 7.63 -2.39 -0.02 2.03 16 41 H 0.06 1.83 7.97 -2.39 -0.02 1.81 16 42 H 0.08 2.72 7.13 -2.39 -0.02 2.70 16 43 H 0.01 0.54 7.92 -2.39 -0.02 0.52 16 44 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 45 H 0.07 3.74 6.06 -2.39 -0.01 3.73 16 46 H 0.00 0.16 7.92 -2.39 -0.02 0.14 16 47 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 48 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 49 H 0.07 1.99 6.43 -2.39 -0.02 1.97 16 50 H 0.04 0.85 7.91 -2.39 -0.02 0.84 16 Total: -1.00 -65.23 392.68 0.50 -64.74 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.22 Total: 23.23 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 5.70 Total: 17.81 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -8.85 Total: -116.19 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 1.45 Total: -13.44 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -65.23 0.50 -64.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724378231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.883 kcal (2) G-P(sol) polarization free energy of solvation -65.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds