Wall clock time and date at job start Wed Apr 1 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99485 * 2 1 4 4 C 1.53006 * 109.46981 * 270.00140 * 3 2 1 5 5 C 1.53002 * 109.46826 * 300.00005 * 4 3 2 6 6 C 1.52994 * 109.46902 * 60.00092 * 4 3 2 7 7 C 1.53002 * 109.46787 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.46824 * 180.02562 * 7 4 3 9 9 C 1.36933 * 120.00098 * 179.97438 * 8 7 4 10 10 H 1.08003 * 119.99971 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00474 * 179.97438 * 9 8 7 12 12 N 1.31619 * 120.00477 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99619 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46953 * 90.00291 * 13 11 9 15 15 H 1.48497 * 109.47038 * 210.00045 * 13 11 9 16 16 H 1.48497 * 109.47214 * 330.00281 * 13 11 9 17 17 C 1.34772 * 120.00020 * 180.02562 * 2 1 3 18 18 O 1.21577 * 119.99911 * 184.61303 * 17 2 1 19 19 C 1.47710 * 120.00453 * 4.60381 * 17 2 1 20 20 C 1.40260 * 119.86582 * 327.93617 * 19 17 2 21 21 C 1.36261 * 120.45629 * 179.97438 * 20 19 17 22 22 C 1.39324 * 120.14807 * 0.02562 * 21 20 19 23 23 C 1.40711 * 120.19372 * 359.97438 * 22 21 20 24 24 C 1.38879 * 119.86409 * 147.65119 * 19 17 2 25 25 N 1.35425 * 107.58065 * 180.02562 * 23 22 21 26 26 N 1.28642 * 110.13805 * 0.02562 * 25 23 22 27 27 N 1.37263 * 133.71309 * 180.02562 * 22 21 20 28 28 C 1.46496 * 126.65661 * 0.03083 * 27 22 21 29 29 H 1.09003 * 109.46860 * 274.06367 * 1 2 3 30 30 H 1.08997 * 109.47574 * 34.06151 * 1 2 3 31 31 H 1.09007 * 109.47174 * 154.06886 * 1 2 3 32 32 H 1.08996 * 109.47423 * 30.00374 * 3 2 1 33 33 H 1.09003 * 109.46448 * 150.00527 * 3 2 1 34 34 H 1.09003 * 109.47274 * 60.00543 * 5 4 3 35 35 H 1.09006 * 109.46592 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47593 * 300.00436 * 5 4 3 37 37 H 1.08995 * 109.47026 * 60.00880 * 6 4 3 38 38 H 1.09006 * 109.47026 * 179.97438 * 6 4 3 39 39 H 1.08993 * 109.47497 * 299.99701 * 6 4 3 40 40 H 1.09004 * 109.46831 * 299.99599 * 7 4 3 41 41 H 1.08996 * 109.47229 * 59.99810 * 7 4 3 42 42 H 0.97005 * 119.99767 * 359.97438 * 8 7 4 43 43 H 0.96996 * 120.00082 * 179.97438 * 12 11 9 44 44 H 1.08003 * 119.76723 * 359.97438 * 20 19 17 45 45 H 1.08001 * 119.92722 * 179.97438 * 21 20 19 46 46 H 1.08000 * 120.22317 * 0.02562 * 24 19 17 47 47 H 1.09000 * 109.47226 * 90.00270 * 28 27 22 48 48 H 1.09004 * 109.47061 * 209.99502 * 28 27 22 49 49 H 1.08994 * 109.47592 * 329.99693 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4523 1.7105 -1.4426 5 6 3.2793 0.6442 -2.1638 6 6 1.1154 1.8933 -2.1637 7 6 3.2178 3.0353 -1.4425 8 7 3.4613 3.4585 -2.8237 9 6 4.1343 4.6246 -3.0740 10 1 4.4851 5.2324 -2.2531 11 6 4.3655 5.0254 -4.3827 12 7 5.0119 6.1464 -4.6232 13 14 3.7593 3.9736 -5.8026 14 1 2.3858 4.3943 -6.1790 15 1 4.6655 4.1436 -6.9666 16 1 3.7447 2.5470 -5.3908 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1689 0.0842 19 6 1.4040 -2.4443 -0.1038 20 6 0.1203 -2.5583 0.4499 21 6 -0.5686 -3.7305 0.3611 22 6 -0.0012 -4.8286 -0.2818 23 6 1.2855 -4.7330 -0.8432 24 6 1.9845 -3.5256 -0.7538 25 7 1.5807 -5.9333 -1.3964 26 7 0.6019 -6.7510 -1.2287 27 7 -0.4298 -6.1091 -0.5287 28 6 -1.7162 -6.6913 -0.1384 29 1 -0.3633 0.0728 1.0251 30 1 -0.3634 0.8513 -0.5755 31 1 -0.3634 -0.9243 -0.4494 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.7343 -0.2998 -2.1638 35 1 3.4605 0.9587 -3.1916 36 1 4.2317 0.5139 -1.6500 37 1 0.5264 2.6530 -1.6499 38 1 1.2970 2.2085 -3.1913 39 1 0.5705 0.9494 -2.1637 40 1 2.6289 3.7951 -0.9286 41 1 4.1702 2.9046 -0.9288 42 1 3.1459 2.9127 -3.5610 43 1 5.1738 6.4263 -5.5377 44 1 -0.3251 -1.7109 0.9500 45 1 -1.5563 -3.8089 0.7909 46 1 2.9713 -3.4357 -1.1835 47 1 -2.4452 -6.5269 -0.9319 48 1 -1.5951 -7.7618 0.0275 49 1 -2.0654 -6.2187 0.7796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725143903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:50 Heat of formation + Delta-G solvation = 120.243877 kcal Electronic energy + Delta-G solvation = -30485.358659 eV Core-core repulsion = 26451.330274 eV Total energy + Delta-G solvation = -4034.028385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55157 -40.63774 -38.09126 -37.15104 -35.38635 -35.17586 -33.20222 -31.26935 -31.14793 -30.46065 -28.16883 -28.06691 -26.97719 -26.23474 -25.80718 -24.35369 -23.37609 -22.03599 -21.66350 -20.13655 -18.79121 -18.55430 -17.74340 -17.59041 -16.67594 -16.61689 -16.30217 -15.78411 -15.35478 -14.78437 -14.72784 -14.39355 -14.23759 -14.06916 -13.84865 -13.64402 -13.51376 -13.36786 -13.18084 -12.90951 -12.76899 -12.59038 -12.49085 -12.35019 -12.24453 -11.74582 -11.37777 -11.31739 -11.28678 -11.19468 -11.16002 -10.86422 -10.78062 -10.44073 -10.36799 -10.09214 -9.85603 -9.53534 -9.31884 -8.88109 -8.85098 -8.65540 -7.16483 -5.72538 -3.06745 -0.01598 0.47370 1.56923 1.70925 2.49165 2.75719 3.27880 3.39594 3.42727 3.47782 3.58337 3.85378 4.01700 4.16825 4.38985 4.47288 4.57387 4.62835 4.63135 4.75906 4.83949 4.90909 4.95043 5.07078 5.15493 5.24751 5.32163 5.39929 5.46211 5.52176 5.60139 5.63490 5.69435 5.71903 5.82697 5.88894 5.94291 6.00098 6.08755 6.13618 6.25853 6.36630 6.48340 6.58783 6.66776 6.76910 6.84587 7.19743 7.52173 8.01221 8.04821 8.46960 9.26607 9.99150 10.19611 11.46145 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002353 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.759075 B =11898.358454 C =12460.034297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.602 5.602 3 C 0.128 3.872 4 C -0.090 4.090 5 C -0.128 4.128 6 C -0.139 4.139 7 C 0.170 3.830 8 N -0.752 5.752 9 C -0.239 4.239 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.881 3.119 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.562 3.438 18 O -0.521 6.521 19 C -0.146 4.146 20 C -0.054 4.054 21 C -0.131 4.131 22 C 0.103 3.897 23 C -0.027 4.027 24 C 0.033 3.967 25 N -0.206 5.206 26 N -0.008 5.008 27 N -0.399 5.399 28 C 0.099 3.901 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.029 0.971 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.151 0.849 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.195 -24.289 14.471 34.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.335 5.335 3 C 0.006 3.994 4 C -0.092 4.092 5 C -0.185 4.185 6 C -0.196 4.196 7 C 0.042 3.958 8 N -0.398 5.398 9 C -0.369 4.369 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.584 5.584 13 Si 0.711 3.289 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.203 1.203 17 C 0.350 3.650 18 O -0.397 6.397 19 C -0.152 4.152 20 C -0.076 4.076 21 C -0.153 4.153 22 C -0.019 4.019 23 C -0.150 4.150 24 C 0.010 3.990 25 N -0.085 5.085 26 N 0.012 4.988 27 N -0.193 5.193 28 C -0.043 4.043 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.169 0.831 47 H 0.102 0.898 48 H 0.116 0.884 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.053 -25.444 13.910 34.697 hybrid contribution -1.038 0.100 -0.745 1.281 sum -20.091 -25.344 13.165 34.918 Atomic orbital electron populations 1.22625 0.80230 1.04488 1.01720 1.47598 1.06720 1.06043 1.73107 1.21584 0.97787 0.83197 0.96879 1.21175 0.96341 0.97073 0.94598 1.21765 0.99707 0.96488 1.00582 1.21923 0.96095 1.00296 1.01289 1.20559 0.96310 0.91108 0.87801 1.42730 1.69513 1.26064 1.01512 1.19067 1.27556 0.96791 0.93511 0.89232 1.24649 1.00603 0.97172 0.96820 1.69696 1.46299 1.23012 1.19365 0.86601 0.78433 0.80415 0.83421 1.21153 1.21731 1.20328 1.17985 0.87045 0.83100 0.76908 1.90843 1.13207 1.86915 1.48751 1.19687 0.95902 0.94929 1.04706 1.21582 0.92576 0.97413 0.96021 1.19718 1.01665 0.90346 1.03572 1.19511 0.95369 0.87284 0.99719 1.19776 0.94504 0.94701 1.06046 1.20545 0.98830 0.87335 0.92319 1.74892 1.18392 1.00067 1.15185 1.81670 0.90946 1.17257 1.08930 1.50140 1.16188 1.08230 1.44782 1.22030 0.79622 1.00920 1.01689 0.92046 0.89974 0.89661 0.90112 0.89202 0.94141 0.92691 0.91984 0.92667 0.92269 0.93209 0.95532 0.95346 0.80476 0.93138 0.82398 0.84457 0.83115 0.89817 0.88361 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.32 7.83 59.85 0.47 0.79 16 2 N -0.60 -6.16 2.40 -182.73 -0.44 -6.60 16 3 C 0.13 1.55 4.63 -4.04 -0.02 1.53 16 4 C -0.09 -1.36 0.60 -154.51 -0.09 -1.46 16 5 C -0.13 -2.15 7.04 37.16 0.26 -1.88 16 6 C -0.14 -1.91 7.05 37.15 0.26 -1.65 16 7 C 0.17 3.26 5.15 -4.04 -0.02 3.24 16 8 N -0.75 -17.94 4.81 -59.91 -0.29 -18.22 16 9 C -0.24 -6.85 10.47 -15.06 -0.16 -7.00 16 10 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 12 N -0.94 -29.77 13.97 55.49 0.78 -29.00 16 13 Si 0.88 22.53 27.73 -169.99 -4.71 17.82 16 14 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 17 C 0.56 6.80 5.68 -12.39 -0.07 6.73 16 18 O -0.52 -8.28 14.87 5.30 0.08 -8.20 16 19 C -0.15 -1.43 5.47 -105.03 -0.57 -2.01 16 20 C -0.05 -0.35 7.35 -39.53 -0.29 -0.64 16 21 C -0.13 -0.76 9.97 -39.89 -0.40 -1.16 16 22 C 0.10 0.90 6.93 -84.10 -0.58 0.32 16 23 C -0.03 -0.30 7.26 -84.76 -0.62 -0.92 16 24 C 0.03 0.36 9.65 -38.76 -0.37 -0.01 16 25 N -0.21 -2.63 12.40 32.15 0.40 -2.23 16 26 N -0.01 -0.09 13.72 60.35 0.83 0.74 16 27 N -0.40 -3.22 4.11 -65.43 -0.27 -3.49 16 28 C 0.10 0.27 11.52 59.84 0.69 0.96 16 29 H 0.06 0.24 7.41 -51.93 -0.38 -0.15 16 30 H 0.08 0.52 5.88 -51.93 -0.31 0.21 16 31 H 0.09 0.44 4.73 -51.92 -0.25 0.20 16 32 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.09 1.22 7.36 -51.93 -0.38 0.84 16 34 H 0.04 0.62 6.21 -51.93 -0.32 0.30 16 35 H 0.05 1.03 6.86 -51.93 -0.36 0.67 16 36 H 0.06 1.12 7.83 -51.93 -0.41 0.71 16 37 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 39 H 0.05 0.57 5.92 -51.93 -0.31 0.26 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.36 8.50 3.22 -40.82 -0.13 8.36 16 43 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 44 H 0.16 0.60 4.75 -52.48 -0.25 0.35 16 45 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 46 H 0.15 1.74 7.94 -52.49 -0.42 1.32 16 47 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 48 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -37.18 383.11 -6.30 -43.48 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.83 Total: 3.10 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.61 Total: -3.17 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 1.01 Total: -58.80 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.18 -6.30 -43.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725143903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.723 kcal (2) G-P(sol) polarization free energy of solvation -37.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds