Wall clock time and date at job start Wed Apr 1 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99485 * 2 1 4 4 C 1.53006 * 109.46981 * 270.00140 * 3 2 1 5 5 C 1.53002 * 109.46826 * 300.00005 * 4 3 2 6 6 C 1.52994 * 109.46902 * 60.00092 * 4 3 2 7 7 C 1.53002 * 109.46787 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.46824 * 180.02562 * 7 4 3 9 9 C 1.36933 * 120.00098 * 179.97438 * 8 7 4 10 10 H 1.08003 * 119.99971 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00474 * 179.97438 * 9 8 7 12 12 N 1.31619 * 120.00477 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99619 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46953 * 90.00291 * 13 11 9 15 15 H 1.48497 * 109.47038 * 210.00045 * 13 11 9 16 16 H 1.48497 * 109.47214 * 330.00281 * 13 11 9 17 17 C 1.34772 * 120.00020 * 180.02562 * 2 1 3 18 18 O 1.21577 * 119.99911 * 184.61303 * 17 2 1 19 19 C 1.47710 * 120.00453 * 4.60381 * 17 2 1 20 20 C 1.40260 * 119.86582 * 327.93617 * 19 17 2 21 21 C 1.36261 * 120.45629 * 179.97438 * 20 19 17 22 22 C 1.39324 * 120.14807 * 0.02562 * 21 20 19 23 23 C 1.40711 * 120.19372 * 359.97438 * 22 21 20 24 24 C 1.38879 * 119.86409 * 147.65119 * 19 17 2 25 25 N 1.35425 * 107.58065 * 180.02562 * 23 22 21 26 26 N 1.28642 * 110.13805 * 0.02562 * 25 23 22 27 27 N 1.37263 * 133.71309 * 180.02562 * 22 21 20 28 28 C 1.46496 * 126.65661 * 0.03083 * 27 22 21 29 29 H 1.09003 * 109.46860 * 274.06367 * 1 2 3 30 30 H 1.08997 * 109.47574 * 34.06151 * 1 2 3 31 31 H 1.09007 * 109.47174 * 154.06886 * 1 2 3 32 32 H 1.08996 * 109.47423 * 30.00374 * 3 2 1 33 33 H 1.09003 * 109.46448 * 150.00527 * 3 2 1 34 34 H 1.09003 * 109.47274 * 60.00543 * 5 4 3 35 35 H 1.09006 * 109.46592 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47593 * 300.00436 * 5 4 3 37 37 H 1.08995 * 109.47026 * 60.00880 * 6 4 3 38 38 H 1.09006 * 109.47026 * 179.97438 * 6 4 3 39 39 H 1.08993 * 109.47497 * 299.99701 * 6 4 3 40 40 H 1.09004 * 109.46831 * 299.99599 * 7 4 3 41 41 H 1.08996 * 109.47229 * 59.99810 * 7 4 3 42 42 H 0.97005 * 119.99767 * 359.97438 * 8 7 4 43 43 H 0.96996 * 120.00082 * 179.97438 * 12 11 9 44 44 H 1.08003 * 119.76723 * 359.97438 * 20 19 17 45 45 H 1.08001 * 119.92722 * 179.97438 * 21 20 19 46 46 H 1.08000 * 120.22317 * 0.02562 * 24 19 17 47 47 H 1.09000 * 109.47226 * 90.00270 * 28 27 22 48 48 H 1.09004 * 109.47061 * 209.99502 * 28 27 22 49 49 H 1.08994 * 109.47592 * 329.99693 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4523 1.7105 -1.4426 5 6 3.2793 0.6442 -2.1638 6 6 1.1154 1.8933 -2.1637 7 6 3.2178 3.0353 -1.4425 8 7 3.4613 3.4585 -2.8237 9 6 4.1343 4.6246 -3.0740 10 1 4.4851 5.2324 -2.2531 11 6 4.3655 5.0254 -4.3827 12 7 5.0119 6.1464 -4.6232 13 14 3.7593 3.9736 -5.8026 14 1 2.3858 4.3943 -6.1790 15 1 4.6655 4.1436 -6.9666 16 1 3.7447 2.5470 -5.3908 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1689 0.0842 19 6 1.4040 -2.4443 -0.1038 20 6 0.1203 -2.5583 0.4499 21 6 -0.5686 -3.7305 0.3611 22 6 -0.0012 -4.8286 -0.2818 23 6 1.2855 -4.7330 -0.8432 24 6 1.9845 -3.5256 -0.7538 25 7 1.5807 -5.9333 -1.3964 26 7 0.6019 -6.7510 -1.2287 27 7 -0.4298 -6.1091 -0.5287 28 6 -1.7162 -6.6913 -0.1384 29 1 -0.3633 0.0728 1.0251 30 1 -0.3634 0.8513 -0.5755 31 1 -0.3634 -0.9243 -0.4494 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.7343 -0.2998 -2.1638 35 1 3.4605 0.9587 -3.1916 36 1 4.2317 0.5139 -1.6500 37 1 0.5264 2.6530 -1.6499 38 1 1.2970 2.2085 -3.1913 39 1 0.5705 0.9494 -2.1637 40 1 2.6289 3.7951 -0.9286 41 1 4.1702 2.9046 -0.9288 42 1 3.1459 2.9127 -3.5610 43 1 5.1738 6.4263 -5.5377 44 1 -0.3251 -1.7109 0.9500 45 1 -1.5563 -3.8089 0.7909 46 1 2.9713 -3.4357 -1.1835 47 1 -2.4452 -6.5269 -0.9319 48 1 -1.5951 -7.7618 0.0275 49 1 -2.0654 -6.2187 0.7796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725143903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:49 Heat of formation + Delta-G solvation = 93.459882 kcal Electronic energy + Delta-G solvation = -30486.520100 eV Core-core repulsion = 26451.330274 eV Total energy + Delta-G solvation = -4035.189826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.21728 -41.52527 -39.13289 -38.10437 -36.57054 -35.75818 -34.93120 -32.83003 -31.85897 -31.56050 -28.93561 -28.52737 -28.19997 -27.56907 -26.99288 -25.26868 -24.18984 -23.68212 -22.25685 -21.04052 -20.29156 -19.41834 -19.24770 -18.29752 -17.48944 -17.30184 -17.09841 -16.82950 -16.48757 -16.18756 -15.62527 -15.51134 -15.32442 -15.12178 -14.94510 -14.48309 -14.33845 -14.29019 -14.09566 -13.92711 -13.79525 -13.73924 -13.50953 -13.31050 -13.15074 -12.97977 -12.88231 -12.64217 -12.46864 -12.26827 -12.23288 -12.04866 -11.85294 -11.73755 -11.72865 -11.64711 -11.50200 -10.98169 -10.89840 -9.97760 -9.65324 -9.37182 -9.26792 -8.02902 -5.34403 -0.68088 -0.19034 1.04594 1.09551 1.33815 1.37199 1.44045 1.65590 1.96752 2.46362 2.56870 2.94707 3.28289 3.31817 3.47255 3.53729 3.66524 3.84700 3.91421 3.93861 3.96793 4.06714 4.22018 4.37738 4.39871 4.45337 4.47902 4.58389 4.66823 4.69107 4.75384 4.79964 4.83736 4.86196 4.90626 4.95039 5.00201 5.04328 5.10108 5.13908 5.16592 5.17828 5.35876 5.39530 5.52043 5.55925 5.63599 5.76618 6.21825 6.39574 6.81258 7.08458 7.14444 7.86130 8.04654 9.18903 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002353 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.759075 B =11898.358454 C =12460.034297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.596 5.596 3 C 0.135 3.865 4 C -0.081 4.081 5 C -0.119 4.119 6 C -0.135 4.135 7 C 0.165 3.835 8 N -0.753 5.753 9 C -0.228 4.228 10 H 0.058 0.942 11 C -0.064 4.064 12 N -0.983 5.983 13 Si 0.948 3.052 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.261 1.261 17 C 0.556 3.444 18 O -0.572 6.572 19 C -0.142 4.142 20 C -0.049 4.049 21 C -0.105 4.105 22 C 0.099 3.901 23 C -0.051 4.051 24 C 0.004 3.996 25 N -0.251 5.251 26 N -0.033 5.033 27 N -0.386 5.386 28 C 0.083 3.917 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.013 0.987 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.197 0.803 45 H 0.189 0.811 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.506 -25.600 16.213 39.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.327 5.327 3 C 0.011 3.989 4 C -0.082 4.082 5 C -0.177 4.177 6 C -0.192 4.192 7 C 0.039 3.961 8 N -0.400 5.400 9 C -0.359 4.359 10 H 0.076 0.924 11 C -0.255 4.255 12 N -0.634 5.634 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.223 1.223 16 H -0.186 1.186 17 C 0.345 3.655 18 O -0.452 6.452 19 C -0.149 4.149 20 C -0.070 4.070 21 C -0.127 4.127 22 C -0.024 4.024 23 C -0.175 4.175 24 C -0.019 4.019 25 N -0.129 5.129 26 N -0.013 5.013 27 N -0.180 5.180 28 C -0.056 4.056 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.031 0.969 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.213 0.787 45 H 0.206 0.794 46 H 0.143 0.857 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.440 -26.812 15.683 39.524 hybrid contribution 0.564 0.502 -1.142 1.369 sum -23.876 -26.310 14.541 38.389 Atomic orbital electron populations 1.23032 0.77050 1.05656 1.04506 1.47638 1.08558 1.04530 1.71925 1.21396 0.98118 0.84938 0.94412 1.21077 0.96313 0.93917 0.96930 1.21665 0.99308 0.97712 0.98997 1.21912 0.95337 1.02396 0.99530 1.20745 0.96480 0.93734 0.85190 1.42746 1.68879 1.24633 1.03719 1.19066 1.26608 0.97598 0.92668 0.92357 1.25440 1.01621 0.98721 0.99761 1.69871 1.48477 1.25243 1.19831 0.85507 0.78113 0.79375 0.79390 1.19716 1.22321 1.18615 1.18409 0.86604 0.84313 0.76145 1.90825 1.15608 1.87687 1.51112 1.19607 0.97273 0.93116 1.04868 1.21931 0.90729 0.98968 0.95342 1.20261 1.03065 0.88324 1.01031 1.19888 0.94448 0.88312 0.99790 1.19977 0.96199 0.94314 1.07032 1.20404 0.98507 0.88500 0.94498 1.74847 1.19770 1.01193 1.17090 1.81545 0.91831 1.17837 1.10120 1.50534 1.16659 1.07924 1.42929 1.22578 0.77509 1.01706 1.03774 0.88296 0.89294 0.88147 0.86887 0.91339 0.93002 0.94996 0.94254 0.90694 0.94900 0.90413 0.94277 0.96852 0.80075 0.93398 0.78681 0.79394 0.85699 0.88038 0.87632 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 7.83 127.77 1.00 1.25 16 2 N -0.60 -10.33 2.40 -850.32 -2.04 -12.37 16 3 C 0.13 2.96 4.63 86.38 0.40 3.36 16 4 C -0.08 -2.33 0.60 -52.18 -0.03 -2.37 16 5 C -0.12 -4.05 7.04 71.98 0.51 -3.54 16 6 C -0.13 -3.29 7.05 71.98 0.51 -2.78 16 7 C 0.17 6.29 5.15 86.38 0.44 6.73 16 8 N -0.75 -36.03 4.81 -343.45 -1.65 -37.68 16 9 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 10 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 11 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 12 N -0.98 -64.31 13.97 21.65 0.30 -64.01 16 13 Si 0.95 47.05 27.73 68.60 1.90 48.95 16 14 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 16 H -0.26 -12.09 6.52 99.48 0.65 -11.44 16 17 C 0.56 12.87 5.68 86.75 0.49 13.36 16 18 O -0.57 -18.92 14.87 -3.96 -0.06 -18.98 16 19 C -0.14 -2.56 5.47 -20.13 -0.11 -2.67 16 20 C -0.05 -0.38 7.35 22.30 0.16 -0.22 16 21 C -0.11 -0.65 9.97 22.07 0.22 -0.43 16 22 C 0.10 1.46 6.93 39.16 0.27 1.73 16 23 C -0.05 -1.16 7.26 39.57 0.29 -0.87 16 24 C 0.00 0.10 9.65 22.80 0.22 0.32 16 25 N -0.25 -6.75 12.40 -52.21 -0.65 -7.40 16 26 N -0.03 -0.76 13.72 37.02 0.51 -0.25 16 27 N -0.39 -5.31 4.11 -360.93 -1.48 -6.79 16 28 C 0.08 0.12 11.52 127.77 1.47 1.60 16 29 H 0.10 0.02 7.41 -2.39 -0.02 0.01 16 30 H 0.09 0.56 5.88 -2.39 -0.01 0.55 16 31 H 0.10 0.41 4.73 -2.38 -0.01 0.40 16 32 H 0.11 1.80 8.07 -2.39 -0.02 1.78 16 33 H 0.07 1.84 7.36 -2.39 -0.02 1.82 16 34 H 0.05 1.61 6.21 -2.39 -0.01 1.60 16 35 H 0.03 1.19 6.86 -2.38 -0.02 1.18 16 36 H 0.04 1.48 7.83 -2.39 -0.02 1.46 16 37 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 38 H 0.03 0.98 6.86 -2.38 -0.02 0.97 16 39 H 0.08 1.46 5.92 -2.39 -0.01 1.45 16 40 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.36 16.95 3.22 -92.70 -0.30 16.65 16 43 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 44 H 0.20 0.08 4.75 -2.91 -0.01 0.07 16 45 H 0.19 -0.68 8.06 -2.91 -0.02 -0.70 16 46 H 0.13 3.35 7.94 -2.91 -0.02 3.33 16 47 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 49 H 0.13 -0.63 8.14 -2.39 -0.02 -0.64 16 Total: -1.00 -89.14 383.11 4.66 -84.49 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.63 Total: 14.46 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 7.19 Total: -0.42 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.01 Total: -128.50 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.95 kcal Total: -89.14 4.66 -84.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725143903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.946 kcal (2) G-P(sol) polarization free energy of solvation -89.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds