Wall clock time and date at job start Wed Apr 1 2020 04:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47346 * 2 1 4 4 C 1.36945 * 119.99693 * 275.30820 * 3 2 1 5 5 H 1.08000 * 119.99790 * 37.57806 * 4 3 2 6 6 C 1.38809 * 119.99705 * 217.57597 * 4 3 2 7 7 N 1.31615 * 120.00138 * 21.43017 * 6 4 3 8 8 Si 1.86805 * 119.99637 * 201.42719 * 6 4 3 9 9 H 1.48496 * 109.47183 * 90.00533 * 8 6 4 10 10 H 1.48501 * 109.46787 * 210.00360 * 8 6 4 11 11 H 1.48496 * 109.47212 * 330.00166 * 8 6 4 12 12 C 1.46494 * 120.00452 * 95.30757 * 3 2 1 13 13 C 1.52994 * 109.47352 * 270.00331 * 12 3 2 14 14 C 1.52996 * 109.47418 * 179.97438 * 13 12 3 15 15 N 1.46504 * 109.47285 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99866 * 180.02562 * 15 14 13 17 17 O 1.21657 * 120.00391 * 359.97438 * 16 15 14 18 18 C 1.47017 * 119.99969 * 180.02562 * 16 15 14 19 19 C 1.41369 * 126.48290 * 359.97155 * 18 16 15 20 20 N 1.30361 * 108.16050 * 180.02562 * 19 18 16 21 21 N 1.39903 * 109.14548 * 0.02562 * 20 19 18 22 22 C 1.46504 * 125.75324 * 179.97438 * 21 20 19 23 23 C 1.34731 * 108.48766 * 359.97438 * 21 20 19 24 24 N 1.38989 * 126.41111 * 180.26227 * 23 21 20 25 25 C 1.36735 * 125.68738 * 134.37802 * 24 23 21 26 26 C 1.34792 * 108.18282 * 179.87030 * 25 24 23 27 27 C 1.41022 * 107.50731 * 0.38833 * 26 25 24 28 28 C 1.34788 * 107.50283 * 359.76023 * 27 26 25 29 29 H 1.09003 * 109.47347 * 59.99866 * 1 2 3 30 30 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47302 * 300.00111 * 1 2 3 32 32 H 1.09003 * 109.47302 * 239.99889 * 2 1 3 33 33 H 1.09008 * 109.47158 * 119.99721 * 2 1 3 34 34 H 0.97004 * 119.99722 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47611 * 149.99694 * 12 3 2 36 36 H 1.09004 * 109.46943 * 30.00382 * 12 3 2 37 37 H 1.09008 * 109.47331 * 59.99814 * 13 12 3 38 38 H 1.09004 * 109.47137 * 299.99931 * 13 12 3 39 39 H 1.09001 * 109.47229 * 60.00260 * 14 13 12 40 40 H 1.09004 * 109.47139 * 300.00211 * 14 13 12 41 41 H 0.96997 * 119.99998 * 0.02562 * 15 14 13 42 42 H 1.07995 * 125.92065 * 0.02562 * 19 18 16 43 43 H 1.09007 * 109.47436 * 270.00050 * 22 21 20 44 44 H 1.08997 * 109.47451 * 29.99835 * 22 21 20 45 45 H 1.08999 * 109.47151 * 149.99907 * 22 21 20 46 46 H 1.07997 * 125.90736 * 0.02562 * 25 24 23 47 47 H 1.07998 * 126.24731 * 180.17149 * 26 25 24 48 48 H 1.07991 * 126.25139 * 179.75481 * 27 26 25 49 49 H 1.07991 * 125.90937 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2112 2.9288 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0994 4.2794 -2.6586 9 1 2.5377 5.5068 -2.0397 10 1 4.4550 4.5694 -3.1910 11 1 2.2167 3.8356 -3.7672 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5131 3.4183 3.1560 15 7 0.3348 4.0944 3.7046 16 6 0.4247 4.7655 4.8699 17 8 1.4840 4.8095 5.4665 18 6 -0.7578 5.4436 5.4208 19 6 -2.0490 5.4808 4.8465 20 7 -2.8224 6.1784 5.6305 21 7 -2.0812 6.6198 6.7319 22 6 -2.5930 7.4335 7.8375 23 6 -0.8175 6.1702 6.6043 24 7 0.2290 6.3876 7.4926 25 6 1.1078 5.4391 7.9374 26 6 1.9761 6.0326 8.7806 27 6 1.6185 7.3939 8.8688 28 6 0.5480 7.5843 8.0723 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 5.0491 3.4026 -0.7836 35 1 3.1617 2.7641 1.0859 36 1 2.7255 1.2834 1.9721 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4877 1.1276 39 1 2.3016 4.1497 2.9791 40 1 1.8651 2.6686 3.8647 41 1 -0.5099 4.0590 3.2292 42 1 -2.3437 5.0125 3.9190 43 1 -2.4677 8.4899 7.5995 44 1 -3.6508 7.2180 7.9879 45 1 -2.0412 7.1981 8.7475 46 1 1.1079 4.3956 7.6591 47 1 2.7939 5.5524 9.2972 48 1 2.1122 8.1464 9.4657 49 1 0.0313 8.5200 7.9187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731313665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:49 Heat of formation + Delta-G solvation = 120.920623 kcal Electronic energy + Delta-G solvation = -29932.395813 eV Core-core repulsion = 25898.396774 eV Total energy + Delta-G solvation = -4033.999039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.41491 -40.73951 -39.09382 -36.40955 -34.77110 -34.10644 -32.96068 -31.84863 -31.28084 -29.27128 -28.99916 -28.45146 -27.53822 -25.26113 -23.80893 -22.85465 -22.27922 -21.07484 -20.90150 -20.31604 -20.12407 -19.55047 -18.61979 -17.05927 -16.69271 -16.38278 -15.75906 -15.37027 -15.23989 -14.84982 -14.75032 -14.35859 -14.16917 -14.05340 -13.84855 -13.48425 -13.42193 -13.35759 -13.12312 -12.94304 -12.57827 -12.53185 -12.35197 -12.25485 -11.57569 -11.46761 -11.39266 -11.12353 -11.00419 -10.75442 -10.55338 -10.44264 -10.29002 -10.04227 -9.81512 -9.62046 -9.51606 -9.40093 -8.84721 -8.54846 -8.45795 -8.33653 -6.55136 -5.76928 -3.36398 0.76000 1.49919 1.79882 2.16027 2.66376 2.89873 3.33361 3.37198 3.41552 3.44932 3.45332 3.97602 4.45524 4.48750 4.57242 4.58876 4.72321 4.86901 4.87808 5.09351 5.19622 5.27333 5.37486 5.42551 5.44650 5.69237 5.82762 5.92809 6.00606 6.04200 6.06589 6.09251 6.11174 6.31004 6.37476 6.45237 6.50535 6.60498 6.70633 6.77197 6.81472 6.86258 6.92619 7.07893 7.11479 7.18178 7.19421 7.69591 7.70804 7.84105 8.38459 8.54205 9.21516 9.83774 10.42576 11.22424 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002384 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.605338 B =11741.353984 C =12141.599182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.124 3.876 15 N -0.718 5.718 16 C 0.585 3.415 17 O -0.540 6.540 18 C -0.282 4.282 19 C 0.096 3.904 20 N -0.276 5.276 21 N -0.365 5.365 22 C 0.092 3.908 23 C 0.358 3.642 24 N -0.392 5.392 25 C 0.063 3.937 26 C -0.204 4.204 27 C -0.171 4.171 28 C -0.036 4.036 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.397 0.603 42 H 0.200 0.800 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.169 0.831 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 7.723 19.338 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.187 4.187 14 C 0.001 3.999 15 N -0.368 5.368 16 C 0.371 3.629 17 O -0.418 6.418 18 C -0.299 4.299 19 C -0.091 4.091 20 N -0.096 5.096 21 N -0.147 5.147 22 C -0.049 4.049 23 C 0.134 3.866 24 N -0.071 5.071 25 C -0.063 4.063 26 C -0.228 4.228 27 C -0.195 4.195 28 C -0.160 4.160 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.230 0.770 42 H 0.217 0.783 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.186 0.814 47 H 0.162 0.838 48 H 0.160 0.840 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.755 8.308 19.824 25.519 hybrid contribution 0.233 0.640 -1.097 1.291 sum -13.521 8.948 18.727 24.771 Atomic orbital electron populations 1.22370 1.00185 0.98869 1.01103 1.20845 0.91660 0.87412 0.98702 1.43751 1.76054 1.08182 1.02514 1.18985 1.04640 1.21202 0.94173 0.92325 1.25186 0.94221 1.01280 0.98055 1.69997 1.03179 1.37208 1.42399 0.86421 0.76947 0.82683 0.81506 1.21314 1.21743 1.20296 1.20789 0.94446 0.96635 0.85733 1.22540 1.02377 0.99874 0.93916 1.21478 0.86856 0.96042 0.95546 1.45912 1.14554 1.53503 1.22813 1.17011 0.86500 0.78280 0.81073 1.90829 1.29268 1.61849 1.59891 1.20014 0.97159 1.15163 0.97530 1.24023 0.90024 0.95939 0.99118 1.77289 1.17768 1.18137 0.96399 1.48623 1.04727 1.41582 1.19734 1.22099 1.02342 0.94494 0.85938 1.17886 0.81582 0.96721 0.90361 1.40589 1.22072 1.09717 1.34695 1.22019 0.91705 0.94985 0.97628 1.20984 1.02410 0.94611 1.04797 1.20983 0.98385 0.97117 1.03051 1.21865 1.02968 0.88729 1.02441 0.93279 0.94665 0.93786 0.93925 0.94846 0.93505 0.88754 0.95679 0.93035 0.91714 0.91461 0.91890 0.76959 0.78315 0.89959 0.88138 0.89014 0.81396 0.83831 0.84025 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.21 37.15 0.38 -2.53 16 2 C 0.14 2.91 6.44 -4.04 -0.03 2.88 16 3 N -0.58 -14.08 2.43 -173.24 -0.42 -14.51 16 4 C -0.26 -6.93 9.45 -15.06 -0.14 -7.07 16 5 H 0.06 1.57 7.92 -52.49 -0.42 1.16 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.21 11.47 55.49 0.64 -24.58 16 8 Si 0.89 21.35 29.61 -169.99 -5.03 16.31 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.15 3.38 5.33 -4.05 -0.02 3.35 16 13 C -0.15 -2.65 5.65 -26.74 -0.15 -2.80 16 14 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 15 N -0.72 -9.98 5.55 -61.51 -0.34 -10.32 16 16 C 0.59 8.81 7.78 -12.70 -0.10 8.71 16 17 O -0.54 -9.72 13.35 5.23 0.07 -9.65 16 18 C -0.28 -3.61 6.13 -104.86 -0.64 -4.25 16 19 C 0.10 1.00 11.49 -16.99 -0.20 0.81 16 20 N -0.28 -3.03 12.48 30.86 0.39 -2.65 16 21 N -0.36 -3.71 3.99 -66.65 -0.27 -3.98 16 22 C 0.09 0.54 10.57 59.85 0.63 1.17 16 23 C 0.36 4.38 7.10 -153.05 -1.09 3.29 16 24 N -0.39 -4.78 2.75 -62.23 -0.17 -4.95 16 25 C 0.06 0.81 8.95 -16.59 -0.15 0.66 16 26 C -0.20 -2.37 10.86 -39.75 -0.43 -2.80 16 27 C -0.17 -1.76 10.86 -39.75 -0.43 -2.19 16 28 C -0.04 -0.38 10.02 -16.59 -0.17 -0.54 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.74 6.64 -51.93 -0.34 0.40 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.65 7.83 -51.92 -0.41 0.24 16 34 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.09 2.43 5.52 -51.93 -0.29 2.14 16 36 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.05 0.87 6.64 -51.92 -0.34 0.52 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 4.44 7.42 -40.82 -0.30 4.13 16 42 H 0.20 1.39 7.50 -52.49 -0.39 0.99 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.47 7.48 -51.93 -0.39 0.08 16 46 H 0.17 2.23 7.16 -52.49 -0.38 1.86 16 47 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 48 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 49 H 0.16 1.21 7.92 -52.49 -0.42 0.79 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -33.13 403.80 -9.14 -42.27 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.44 Total: 4.98 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.64 Total: 0.99 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.18 Total: -60.99 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.13 -9.14 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731313665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.188 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds