Wall clock time and date at job start Wed Apr 1 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47346 * 2 1 4 4 C 1.36945 * 119.99693 * 275.30820 * 3 2 1 5 5 H 1.08000 * 119.99790 * 37.57806 * 4 3 2 6 6 C 1.38809 * 119.99705 * 217.57597 * 4 3 2 7 7 N 1.31615 * 120.00138 * 21.43017 * 6 4 3 8 8 Si 1.86805 * 119.99637 * 201.42719 * 6 4 3 9 9 H 1.48496 * 109.47183 * 90.00533 * 8 6 4 10 10 H 1.48501 * 109.46787 * 210.00360 * 8 6 4 11 11 H 1.48496 * 109.47212 * 330.00166 * 8 6 4 12 12 C 1.46494 * 120.00452 * 95.30757 * 3 2 1 13 13 C 1.52994 * 109.47352 * 270.00331 * 12 3 2 14 14 C 1.52996 * 109.47418 * 179.97438 * 13 12 3 15 15 N 1.46504 * 109.47285 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99866 * 180.02562 * 15 14 13 17 17 O 1.21657 * 120.00391 * 359.97438 * 16 15 14 18 18 C 1.47017 * 119.99969 * 180.02562 * 16 15 14 19 19 C 1.41369 * 126.48290 * 359.97155 * 18 16 15 20 20 N 1.30361 * 108.16050 * 180.02562 * 19 18 16 21 21 N 1.39903 * 109.14548 * 0.02562 * 20 19 18 22 22 C 1.46504 * 125.75324 * 179.97438 * 21 20 19 23 23 C 1.34731 * 108.48766 * 359.97438 * 21 20 19 24 24 N 1.38989 * 126.41111 * 180.26227 * 23 21 20 25 25 C 1.36735 * 125.68738 * 134.37802 * 24 23 21 26 26 C 1.34792 * 108.18282 * 179.87030 * 25 24 23 27 27 C 1.41022 * 107.50731 * 0.38833 * 26 25 24 28 28 C 1.34788 * 107.50283 * 359.76023 * 27 26 25 29 29 H 1.09003 * 109.47347 * 59.99866 * 1 2 3 30 30 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47302 * 300.00111 * 1 2 3 32 32 H 1.09003 * 109.47302 * 239.99889 * 2 1 3 33 33 H 1.09008 * 109.47158 * 119.99721 * 2 1 3 34 34 H 0.97004 * 119.99722 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47611 * 149.99694 * 12 3 2 36 36 H 1.09004 * 109.46943 * 30.00382 * 12 3 2 37 37 H 1.09008 * 109.47331 * 59.99814 * 13 12 3 38 38 H 1.09004 * 109.47137 * 299.99931 * 13 12 3 39 39 H 1.09001 * 109.47229 * 60.00260 * 14 13 12 40 40 H 1.09004 * 109.47139 * 300.00211 * 14 13 12 41 41 H 0.96997 * 119.99998 * 0.02562 * 15 14 13 42 42 H 1.07995 * 125.92065 * 0.02562 * 19 18 16 43 43 H 1.09007 * 109.47436 * 270.00050 * 22 21 20 44 44 H 1.08997 * 109.47451 * 29.99835 * 22 21 20 45 45 H 1.08999 * 109.47151 * 149.99907 * 22 21 20 46 46 H 1.07997 * 125.90736 * 0.02562 * 25 24 23 47 47 H 1.07998 * 126.24731 * 180.17149 * 26 25 24 48 48 H 1.07991 * 126.25139 * 179.75481 * 27 26 25 49 49 H 1.07991 * 125.90937 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2112 2.9288 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0994 4.2794 -2.6586 9 1 2.5377 5.5068 -2.0397 10 1 4.4550 4.5694 -3.1910 11 1 2.2167 3.8356 -3.7672 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5131 3.4183 3.1560 15 7 0.3348 4.0944 3.7046 16 6 0.4247 4.7655 4.8699 17 8 1.4840 4.8095 5.4665 18 6 -0.7578 5.4436 5.4208 19 6 -2.0490 5.4808 4.8465 20 7 -2.8224 6.1784 5.6305 21 7 -2.0812 6.6198 6.7319 22 6 -2.5930 7.4335 7.8375 23 6 -0.8175 6.1702 6.6043 24 7 0.2290 6.3876 7.4926 25 6 1.1078 5.4391 7.9374 26 6 1.9761 6.0326 8.7806 27 6 1.6185 7.3939 8.8688 28 6 0.5480 7.5843 8.0723 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 5.0491 3.4026 -0.7836 35 1 3.1617 2.7641 1.0859 36 1 2.7255 1.2834 1.9721 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4877 1.1276 39 1 2.3016 4.1497 2.9791 40 1 1.8651 2.6686 3.8647 41 1 -0.5099 4.0590 3.2292 42 1 -2.3437 5.0125 3.9190 43 1 -2.4677 8.4899 7.5995 44 1 -3.6508 7.2180 7.9879 45 1 -2.0412 7.1981 8.7475 46 1 1.1079 4.3956 7.6591 47 1 2.7939 5.5524 9.2972 48 1 2.1122 8.1464 9.4657 49 1 0.0313 8.5200 7.9187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731313665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:48 Heat of formation + Delta-G solvation = 102.164342 kcal Electronic energy + Delta-G solvation = -29933.209146 eV Core-core repulsion = 25898.396774 eV Total energy + Delta-G solvation = -4034.812372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.25313 -41.57275 -40.28731 -38.14014 -36.14726 -34.88686 -33.81200 -33.77580 -32.69980 -30.45868 -29.95861 -29.71829 -28.32548 -26.90678 -25.35085 -23.93753 -23.09938 -22.54298 -22.07933 -21.74998 -21.09324 -20.52554 -19.53573 -18.59205 -18.04108 -17.22662 -16.98185 -16.83324 -16.40852 -16.25891 -15.70024 -15.68460 -15.38915 -15.16239 -14.95793 -14.87464 -14.56225 -14.25676 -14.17828 -14.02841 -13.75596 -13.63243 -13.34734 -13.21083 -13.14696 -13.06124 -12.71401 -12.69313 -12.56234 -12.34671 -12.25174 -12.10057 -11.90033 -11.43173 -11.21367 -11.09888 -10.99261 -10.47648 -10.27752 -10.01120 -9.46420 -9.19928 -8.52454 -7.78575 -5.42834 -0.13675 0.73975 0.94540 1.30329 1.46232 1.49107 1.56647 1.88282 2.04682 2.22753 2.32634 2.52807 3.22331 3.27371 3.70168 3.71188 3.74929 3.93263 4.16878 4.20709 4.22671 4.26372 4.29743 4.41943 4.48708 4.49990 4.58503 4.60999 4.62293 4.77540 4.81672 4.92087 5.05346 5.07503 5.10446 5.19792 5.21722 5.27505 5.33976 5.36837 5.46901 5.51091 5.63648 5.72499 5.87259 5.88158 6.03014 6.26063 6.34104 6.50583 6.60096 7.21319 7.25505 7.91616 8.43787 9.15820 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002384 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.605338 B =11741.353984 C =12141.599182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.261 4.261 5 H 0.056 0.944 6 C -0.036 4.036 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.268 1.268 12 C 0.151 3.849 13 C -0.122 4.122 14 C 0.139 3.861 15 N -0.707 5.707 16 C 0.584 3.416 17 O -0.576 6.576 18 C -0.306 4.306 19 C 0.105 3.895 20 N -0.286 5.286 21 N -0.357 5.357 22 C 0.081 3.919 23 C 0.349 3.651 24 N -0.398 5.398 25 C 0.034 3.966 26 C -0.210 4.210 27 C -0.178 4.178 28 C -0.035 4.035 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.250 0.750 35 H 0.058 0.942 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.412 0.588 42 H 0.230 0.770 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.153 0.847 47 H 0.154 0.846 48 H 0.167 0.833 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.790 8.718 20.037 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.073 0.927 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.213 1.213 10 H -0.224 1.224 11 H -0.192 1.192 12 C 0.024 3.976 13 C -0.162 4.162 14 C 0.014 3.986 15 N -0.359 5.359 16 C 0.372 3.628 17 O -0.457 6.457 18 C -0.323 4.323 19 C -0.082 4.082 20 N -0.106 5.106 21 N -0.138 5.138 22 C -0.058 4.058 23 C 0.124 3.876 24 N -0.077 5.077 25 C -0.092 4.092 26 C -0.234 4.234 27 C -0.203 4.203 28 C -0.158 4.158 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.249 0.751 42 H 0.246 0.754 43 H 0.121 0.879 44 H 0.134 0.866 45 H 0.117 0.883 46 H 0.171 0.829 47 H 0.172 0.828 48 H 0.184 0.816 49 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.374 9.298 20.526 27.855 hybrid contribution 1.016 0.289 -1.233 1.623 sum -15.359 9.587 19.293 26.458 Atomic orbital electron populations 1.22168 0.97167 1.00762 1.00922 1.20998 0.93912 0.85674 0.98564 1.44000 1.76455 1.09576 1.02288 1.19182 1.04007 1.21119 0.94861 0.92673 1.25838 0.94051 1.03336 1.00130 1.70131 1.03787 1.38034 1.44251 0.85500 0.76528 0.80177 0.79669 1.21256 1.22367 1.19230 1.20687 0.95327 0.96069 0.85516 1.22163 1.00671 0.99555 0.93848 1.21103 0.87200 0.95354 0.94895 1.45664 1.14371 1.53103 1.22719 1.17336 0.86820 0.77886 0.80765 1.90812 1.30860 1.63153 1.60847 1.19905 0.97240 1.16481 0.98679 1.24456 0.88674 0.95282 0.99790 1.77270 1.18070 1.18469 0.96805 1.48940 1.03808 1.41013 1.20069 1.22487 1.03273 0.95059 0.84960 1.18034 0.82418 0.96823 0.90287 1.40687 1.22081 1.10115 1.34821 1.21958 0.93189 0.94928 0.99128 1.21284 1.02221 0.95557 1.04312 1.21328 0.98562 0.96931 1.03433 1.22410 1.02890 0.89005 1.01479 0.94479 0.91730 0.92852 0.95379 0.93733 0.94085 0.92372 0.95420 0.90921 0.92921 0.94046 0.91981 0.75127 0.75382 0.87899 0.86550 0.88305 0.82949 0.82836 0.81562 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 10.21 71.98 0.73 -4.20 16 2 C 0.13 5.42 6.44 86.38 0.56 5.98 16 3 N -0.60 -28.99 2.43 -702.01 -1.71 -30.70 16 4 C -0.26 -13.97 9.45 84.03 0.79 -13.18 16 5 H 0.06 2.95 7.92 -2.91 -0.02 2.93 16 6 C -0.04 -1.99 4.95 84.86 0.42 -1.57 16 7 N -0.92 -53.72 11.47 21.65 0.25 -53.47 16 8 Si 0.95 44.37 29.61 68.60 2.03 46.40 16 9 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.15 6.82 5.33 86.38 0.46 7.28 16 13 C -0.12 -4.34 5.65 30.59 0.17 -4.17 16 14 C 0.14 4.61 5.67 86.38 0.49 5.10 16 15 N -0.71 -19.25 5.55 -466.75 -2.59 -21.84 16 16 C 0.58 17.63 7.78 86.54 0.67 18.30 16 17 O -0.58 -21.41 13.35 -4.21 -0.06 -21.46 16 18 C -0.31 -7.61 6.13 -20.02 -0.12 -7.73 16 19 C 0.10 1.98 11.49 85.68 0.98 2.97 16 20 N -0.29 -5.67 12.48 -56.27 -0.70 -6.37 16 21 N -0.36 -6.56 3.99 -364.79 -1.46 -8.02 16 22 C 0.08 0.73 10.57 127.77 1.35 2.08 16 23 C 0.35 8.22 7.10 132.33 0.94 9.16 16 24 N -0.40 -9.49 2.75 -350.79 -0.96 -10.45 16 25 C 0.03 0.90 8.95 83.14 0.74 1.64 16 26 C -0.21 -4.84 10.86 22.16 0.24 -4.60 16 27 C -0.18 -3.41 10.86 22.16 0.24 -3.17 16 28 C -0.03 -0.66 10.02 83.14 0.83 0.18 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.63 6.64 -2.39 -0.02 1.62 16 32 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.04 1.68 7.83 -2.38 -0.02 1.66 16 34 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.06 3.11 5.52 -2.39 -0.01 3.09 16 36 H 0.03 1.20 7.86 -2.38 -0.02 1.18 16 37 H 0.07 2.28 6.64 -2.38 -0.02 2.27 16 38 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.41 8.51 7.42 -92.71 -0.69 7.82 16 42 H 0.23 2.53 7.50 -2.91 -0.02 2.51 16 43 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.10 0.78 7.48 -2.39 -0.02 0.76 16 46 H 0.15 4.37 7.16 -2.91 -0.02 4.35 16 47 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.19 2.29 7.92 -2.92 -0.02 2.27 16 Total: -1.00 -73.21 403.80 4.59 -68.62 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.27 Total: 23.19 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 9.51 Total: 14.08 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -7.17 Total: -130.84 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.21 4.59 -68.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731313665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.787 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds