Wall clock time and date at job start Wed Apr 1 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46908 * 2 1 4 4 N 1.46497 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99792 * 270.00099 * 4 3 2 6 6 H 1.07996 * 120.00011 * 38.13231 * 5 4 3 7 7 C 1.38815 * 119.99873 * 218.12844 * 5 4 3 8 8 N 1.31617 * 120.00114 * 21.29151 * 7 5 4 9 9 Si 1.86802 * 120.00064 * 201.29043 * 7 5 4 10 10 H 1.48500 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47208 * 120.00084 * 9 7 5 12 12 H 1.48500 * 109.46779 * 240.00552 * 9 7 5 13 13 C 1.46506 * 120.00215 * 89.99892 * 4 3 2 14 14 C 1.53002 * 109.47118 * 264.50296 * 13 4 3 15 15 N 1.46497 * 109.46563 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99791 * 179.97438 * 15 14 13 17 17 O 1.21598 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.47508 * 120.00230 * 180.02562 * 16 15 14 19 19 C 1.36886 * 120.60850 * 180.02562 * 18 16 15 20 20 C 1.40130 * 119.25483 * 179.97438 * 19 18 16 21 21 C 1.50702 * 119.76756 * 179.97438 * 20 19 18 22 22 N 1.31145 * 120.46568 * 359.97438 * 20 19 18 23 23 C 1.33701 * 121.18298 * 0.02562 * 22 20 19 24 24 C 1.39069 * 132.55612 * 180.02562 * 23 22 20 25 25 C 1.38503 * 107.66626 * 180.02562 * 24 23 22 26 26 C 1.50695 * 125.47901 * 179.97438 * 25 24 23 27 27 N 1.31521 * 109.03942 * 359.97438 * 25 24 23 28 28 N 1.37292 * 120.63646 * 359.74677 * 23 22 20 29 29 H 1.09003 * 109.47491 * 59.99397 * 1 2 3 30 30 H 1.08995 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47131 * 299.99655 * 1 2 3 32 32 H 1.09005 * 109.47117 * 240.00517 * 2 1 3 33 33 H 1.08992 * 109.47346 * 120.00150 * 2 1 3 34 34 H 1.08995 * 109.46944 * 60.00230 * 3 2 1 35 35 H 1.09004 * 109.46914 * 300.00151 * 3 2 1 36 36 H 0.96994 * 120.00095 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47086 * 144.49993 * 13 4 3 38 38 H 1.09004 * 109.46572 * 24.50055 * 13 4 3 39 39 H 1.09005 * 109.47065 * 60.00117 * 14 13 4 40 40 H 1.08995 * 109.47160 * 299.99658 * 14 13 4 41 41 H 0.96999 * 120.00346 * 0.02562 * 15 14 13 42 42 H 1.07998 * 120.37281 * 359.97438 * 19 18 16 43 43 H 1.09006 * 109.46976 * 90.00430 * 21 20 19 44 44 H 1.09003 * 109.47155 * 209.99389 * 21 20 19 45 45 H 1.08995 * 109.47464 * 330.00193 * 21 20 19 46 46 H 1.07998 * 126.16152 * 359.97438 * 24 23 22 47 47 H 1.09005 * 109.47254 * 89.99560 * 26 25 24 48 48 H 1.08993 * 109.47364 * 209.99790 * 26 25 24 49 49 H 1.09000 * 109.47243 * 329.99682 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5891 3.1901 0.4962 9 14 6.5946 1.7565 2.6443 10 1 6.1004 0.5937 3.4246 11 1 7.8969 1.4153 2.0176 12 1 6.7705 2.9206 3.5494 13 6 4.2370 1.4428 -1.2697 14 6 4.6115 0.0070 -1.6426 15 7 5.3430 0.0072 -2.9119 16 6 5.7770 -1.1545 -3.4398 17 8 5.5610 -2.2028 -2.8627 18 6 6.5140 -1.1543 -4.7175 19 6 6.9599 -2.3269 -5.2651 20 6 7.6567 -2.2938 -6.4805 21 6 8.1533 -3.5779 -7.0934 22 7 7.8795 -1.1533 -7.0883 23 6 7.4522 0.0026 -6.5698 24 6 7.5528 1.3210 -7.0007 25 6 6.9234 2.1197 -6.0604 26 6 6.7972 3.6197 -6.1307 27 7 6.4536 1.3585 -5.0963 28 7 6.7609 0.0242 -5.3838 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 6.4037 3.7090 0.5858 37 1 5.1432 2.0395 -1.1663 38 1 3.6084 1.8691 -2.0516 39 1 3.7052 -0.5898 -1.7460 40 1 5.2400 -0.4193 -0.8607 41 1 5.5156 0.8435 -3.3721 42 1 6.7769 -3.2670 -4.7661 43 1 7.3868 -3.9864 -7.7520 44 1 9.0582 -3.3800 -7.6681 45 1 8.3742 -4.2959 -6.3037 46 1 8.0356 1.6608 -7.9050 47 1 5.8800 3.8829 -6.6576 48 1 6.7666 4.0295 -5.1212 49 1 7.6537 4.0318 -6.6642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731873902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:54 Heat of formation + Delta-G solvation = 92.522539 kcal Electronic energy + Delta-G solvation = -30451.832754 eV Core-core repulsion = 26416.602282 eV Total energy + Delta-G solvation = -4035.230472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.54777 -39.55763 -38.52902 -36.53137 -34.68958 -34.25014 -32.89808 -32.76542 -30.83048 -30.62213 -28.72189 -28.34924 -27.66549 -25.59051 -25.01316 -23.11610 -22.69397 -21.20732 -20.73600 -20.56955 -20.07190 -18.62523 -17.22165 -16.89220 -16.51455 -16.45216 -15.59147 -15.21689 -15.06233 -14.74652 -14.43097 -14.30965 -14.25715 -13.91717 -13.56288 -13.42978 -13.30964 -13.15744 -13.02339 -12.82861 -12.71663 -12.66618 -12.43725 -11.88425 -11.63595 -11.55939 -11.27906 -11.19323 -11.10687 -10.96704 -10.76490 -10.52257 -10.37619 -10.34610 -10.10156 -9.95687 -9.91852 -9.67933 -9.45006 -8.68600 -8.52619 -8.10915 -6.64251 -5.83599 -3.45516 -0.05751 0.61705 1.73651 2.24656 2.81458 3.03812 3.30567 3.32982 3.41994 3.45068 3.45506 3.83596 4.26763 4.45405 4.51959 4.69600 4.93668 4.97828 5.16193 5.22216 5.27167 5.32053 5.34144 5.45852 5.46793 5.50963 5.59194 5.63705 5.73473 5.75764 5.85202 5.97897 6.06622 6.14992 6.22170 6.26918 6.37586 6.39572 6.48093 6.58839 6.63552 6.69352 6.93917 6.95599 7.14261 7.22891 7.36107 7.52911 7.74306 7.79562 8.26425 8.46397 9.12031 9.74079 10.32193 11.14676 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.003163 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.160861 B = 8849.331197 C = 9420.252552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.264 4.264 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.884 5.884 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.137 3.863 14 C 0.094 3.906 15 N -0.692 5.692 16 C 0.547 3.453 17 O -0.525 6.525 18 C 0.155 3.845 19 C -0.159 4.159 20 C 0.202 3.798 21 C -0.105 4.105 22 N -0.457 5.457 23 C 0.263 3.737 24 C -0.259 4.259 25 C 0.124 3.876 26 C -0.079 4.079 27 N -0.312 5.312 28 N -0.306 5.306 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.255 0.745 37 H 0.099 0.901 38 H 0.031 0.969 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.415 0.585 42 H 0.179 0.821 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.164 0.836 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -6.583 -17.153 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.080 0.920 7 C -0.185 4.185 8 N -0.525 5.525 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.215 1.215 13 C 0.009 3.991 14 C -0.030 4.030 15 N -0.346 5.346 16 C 0.329 3.671 17 O -0.402 6.402 18 C 0.037 3.963 19 C -0.185 4.185 20 C 0.037 3.963 21 C -0.163 4.163 22 N -0.170 5.170 23 C 0.036 3.964 24 C -0.289 4.289 25 C -0.034 4.034 26 C -0.138 4.138 27 N -0.139 5.139 28 N -0.080 5.080 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.256 0.744 42 H 0.197 0.803 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.181 0.819 47 H 0.104 0.896 48 H 0.103 0.897 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.371 -6.770 -16.346 17.851 hybrid contribution 0.853 0.000 0.431 0.956 sum 3.225 -6.770 -15.915 17.593 Atomic orbital electron populations 1.21719 0.97281 1.00400 1.01050 1.22207 0.93893 1.01000 1.01463 1.20962 0.84993 0.92876 0.99074 1.43603 0.99428 1.85023 1.01735 1.19051 1.06146 1.22815 0.91301 0.91986 1.25201 1.00812 0.94633 0.97902 1.69976 1.25897 1.17026 1.39636 0.86366 0.81542 0.78161 0.81598 1.19902 1.21444 1.21499 1.21054 0.99770 0.91378 0.86891 1.22619 0.94980 1.03144 0.82279 1.46537 1.54103 1.09069 1.24883 1.17578 0.80587 0.85641 0.83307 1.90841 1.57567 1.31143 1.60615 1.21034 0.97875 0.83063 0.94307 1.21958 1.00797 0.98234 0.97486 1.21891 0.90196 0.94257 0.89922 1.20841 1.02749 0.90839 1.01831 1.67780 1.20947 0.96163 1.32143 1.20677 0.95427 0.94727 0.85609 1.20845 1.15196 0.87470 1.05431 1.22284 0.93140 0.97420 0.90511 1.20361 1.03553 0.85314 1.04525 1.77401 1.29304 0.82823 1.24399 1.47340 1.37397 1.06153 1.17088 0.93459 0.93813 0.93147 0.93093 0.92330 0.93153 0.94959 0.93530 0.88331 0.95078 0.92440 0.91100 0.74395 0.80340 0.88997 0.89431 0.89306 0.81856 0.89584 0.89662 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.66 6.26 -26.73 -0.17 -2.83 16 3 C 0.15 3.07 5.71 -4.04 -0.02 3.05 16 4 N -0.58 -14.09 2.43 -173.23 -0.42 -14.51 16 5 C -0.26 -7.07 9.42 -15.06 -0.14 -7.21 16 6 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 7 C 0.02 0.42 5.00 -17.43 -0.09 0.33 16 8 N -0.88 -24.85 11.44 55.49 0.63 -24.21 16 9 Si 0.89 21.54 29.60 -169.99 -5.03 16.50 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.14 3.14 5.50 -4.04 -0.02 3.12 16 14 C 0.09 2.01 5.97 -4.04 -0.02 1.99 16 15 N -0.69 -13.36 5.55 -61.36 -0.34 -13.70 16 16 C 0.55 10.05 7.79 -12.48 -0.10 9.96 16 17 O -0.52 -10.54 16.36 5.28 0.09 -10.45 16 18 C 0.16 2.42 6.82 -81.98 -0.56 1.86 16 19 C -0.16 -1.93 9.27 -39.36 -0.37 -2.29 16 20 C 0.20 2.16 6.82 -82.17 -0.56 1.60 16 21 C -0.11 -0.63 10.18 36.01 0.37 -0.27 16 22 N -0.46 -5.93 10.36 -8.48 -0.09 -6.02 16 23 C 0.26 3.82 7.93 -155.56 -1.23 2.59 16 24 C -0.26 -3.29 10.82 -39.18 -0.42 -3.71 16 25 C 0.12 1.62 7.15 -82.63 -0.59 1.03 16 26 C -0.08 -0.73 10.43 36.00 0.38 -0.35 16 27 N -0.31 -5.00 9.92 33.51 0.33 -4.67 16 28 N -0.31 -4.86 3.94 -8.87 -0.03 -4.89 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.95 6.65 -51.93 -0.35 0.61 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 35 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.10 2.57 5.53 -51.93 -0.29 2.28 16 38 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 39 H 0.06 1.21 6.65 -51.93 -0.35 0.87 16 40 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.41 7.83 5.50 -40.82 -0.22 7.60 16 42 H 0.18 1.79 7.65 -52.49 -0.40 1.39 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 46 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -32.20 405.41 -9.40 -41.59 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.46 Total: 7.18 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -3.19 Total: 7.06 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: 0.08 Total: -67.99 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.20 -9.40 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731873902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.116 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds