Wall clock time and date at job start Wed Apr 1 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46908 * 2 1 4 4 N 1.46497 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99792 * 270.00099 * 4 3 2 6 6 H 1.07996 * 120.00011 * 38.13231 * 5 4 3 7 7 C 1.38815 * 119.99873 * 218.12844 * 5 4 3 8 8 N 1.31617 * 120.00114 * 21.29151 * 7 5 4 9 9 Si 1.86802 * 120.00064 * 201.29043 * 7 5 4 10 10 H 1.48500 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47208 * 120.00084 * 9 7 5 12 12 H 1.48500 * 109.46779 * 240.00552 * 9 7 5 13 13 C 1.46506 * 120.00215 * 89.99892 * 4 3 2 14 14 C 1.53002 * 109.47118 * 264.50296 * 13 4 3 15 15 N 1.46497 * 109.46563 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99791 * 179.97438 * 15 14 13 17 17 O 1.21598 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.47508 * 120.00230 * 180.02562 * 16 15 14 19 19 C 1.36886 * 120.60850 * 180.02562 * 18 16 15 20 20 C 1.40130 * 119.25483 * 179.97438 * 19 18 16 21 21 C 1.50702 * 119.76756 * 179.97438 * 20 19 18 22 22 N 1.31145 * 120.46568 * 359.97438 * 20 19 18 23 23 C 1.33701 * 121.18298 * 0.02562 * 22 20 19 24 24 C 1.39069 * 132.55612 * 180.02562 * 23 22 20 25 25 C 1.38503 * 107.66626 * 180.02562 * 24 23 22 26 26 C 1.50695 * 125.47901 * 179.97438 * 25 24 23 27 27 N 1.31521 * 109.03942 * 359.97438 * 25 24 23 28 28 N 1.37292 * 120.63646 * 359.74677 * 23 22 20 29 29 H 1.09003 * 109.47491 * 59.99397 * 1 2 3 30 30 H 1.08995 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47131 * 299.99655 * 1 2 3 32 32 H 1.09005 * 109.47117 * 240.00517 * 2 1 3 33 33 H 1.08992 * 109.47346 * 120.00150 * 2 1 3 34 34 H 1.08995 * 109.46944 * 60.00230 * 3 2 1 35 35 H 1.09004 * 109.46914 * 300.00151 * 3 2 1 36 36 H 0.96994 * 120.00095 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47086 * 144.49993 * 13 4 3 38 38 H 1.09004 * 109.46572 * 24.50055 * 13 4 3 39 39 H 1.09005 * 109.47065 * 60.00117 * 14 13 4 40 40 H 1.08995 * 109.47160 * 299.99658 * 14 13 4 41 41 H 0.96999 * 120.00346 * 0.02562 * 15 14 13 42 42 H 1.07998 * 120.37281 * 359.97438 * 19 18 16 43 43 H 1.09006 * 109.46976 * 90.00430 * 21 20 19 44 44 H 1.09003 * 109.47155 * 209.99389 * 21 20 19 45 45 H 1.08995 * 109.47464 * 330.00193 * 21 20 19 46 46 H 1.07998 * 126.16152 * 359.97438 * 24 23 22 47 47 H 1.09005 * 109.47254 * 89.99560 * 26 25 24 48 48 H 1.08993 * 109.47364 * 209.99790 * 26 25 24 49 49 H 1.09000 * 109.47243 * 329.99682 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5891 3.1901 0.4962 9 14 6.5946 1.7565 2.6443 10 1 6.1004 0.5937 3.4246 11 1 7.8969 1.4153 2.0176 12 1 6.7705 2.9206 3.5494 13 6 4.2370 1.4428 -1.2697 14 6 4.6115 0.0070 -1.6426 15 7 5.3430 0.0072 -2.9119 16 6 5.7770 -1.1545 -3.4398 17 8 5.5610 -2.2028 -2.8627 18 6 6.5140 -1.1543 -4.7175 19 6 6.9599 -2.3269 -5.2651 20 6 7.6567 -2.2938 -6.4805 21 6 8.1533 -3.5779 -7.0934 22 7 7.8795 -1.1533 -7.0883 23 6 7.4522 0.0026 -6.5698 24 6 7.5528 1.3210 -7.0007 25 6 6.9234 2.1197 -6.0604 26 6 6.7972 3.6197 -6.1307 27 7 6.4536 1.3585 -5.0963 28 7 6.7609 0.0242 -5.3838 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 6.4037 3.7090 0.5858 37 1 5.1432 2.0395 -1.1663 38 1 3.6084 1.8691 -2.0516 39 1 3.7052 -0.5898 -1.7460 40 1 5.2400 -0.4193 -0.8607 41 1 5.5156 0.8435 -3.3721 42 1 6.7769 -3.2670 -4.7661 43 1 7.3868 -3.9864 -7.7520 44 1 9.0582 -3.3800 -7.6681 45 1 8.3742 -4.2959 -6.3037 46 1 8.0356 1.6608 -7.9050 47 1 5.8800 3.8829 -6.6576 48 1 6.7666 4.0295 -5.1212 49 1 7.6537 4.0318 -6.6642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731873902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:53 Heat of formation + Delta-G solvation = 73.504814 kcal Electronic energy + Delta-G solvation = -30452.657424 eV Core-core repulsion = 26416.602282 eV Total energy + Delta-G solvation = -4036.055142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.57186 -40.98036 -39.53907 -38.32633 -36.08145 -35.48612 -34.64270 -33.67670 -32.66326 -31.48281 -30.13372 -29.51159 -28.50942 -27.38673 -26.38418 -24.66512 -23.61547 -22.75568 -22.17572 -21.80369 -21.59725 -19.84387 -18.69679 -18.17683 -17.81146 -17.59909 -17.11531 -17.05426 -16.44978 -16.11735 -15.92503 -15.68992 -15.42376 -14.97668 -14.92733 -14.71648 -14.49359 -14.37003 -14.25974 -13.95992 -13.93251 -13.41127 -13.32039 -13.13830 -13.10319 -12.98474 -12.72121 -12.65159 -12.52735 -12.30970 -12.24416 -12.15917 -12.07355 -11.91562 -11.78596 -11.71944 -11.35570 -11.06180 -10.60197 -10.44544 -10.28767 -9.13634 -8.64942 -7.88304 -5.54899 -1.12756 -0.34857 0.71542 1.14742 1.38140 1.43081 1.52262 1.61493 1.68258 2.23025 2.44306 2.57727 2.76574 3.12961 3.20206 3.66791 3.68027 3.74938 3.90743 4.12568 4.14557 4.21495 4.28344 4.34924 4.43848 4.51875 4.61095 4.63914 4.66498 4.75180 4.78908 4.79671 4.81082 4.84226 4.95311 5.01032 5.05784 5.14028 5.17408 5.20459 5.23938 5.34579 5.40277 5.48478 5.57341 5.58893 5.68288 6.10812 6.31921 6.40165 6.41370 6.77809 7.09250 7.76205 8.29859 9.05777 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.003163 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.160861 B = 8849.331197 C = 9420.252552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.144 3.856 4 N -0.594 5.594 5 C -0.271 4.271 6 H 0.056 0.944 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.284 1.284 13 C 0.146 3.854 14 C 0.116 3.884 15 N -0.698 5.698 16 C 0.549 3.451 17 O -0.548 6.548 18 C 0.117 3.883 19 C -0.132 4.132 20 C 0.208 3.792 21 C -0.103 4.103 22 N -0.464 5.464 23 C 0.243 3.757 24 C -0.257 4.257 25 C 0.119 3.881 26 C -0.077 4.077 27 N -0.355 5.355 28 N -0.320 5.320 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.253 0.747 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.417 0.583 42 H 0.201 0.799 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.191 0.809 47 H 0.102 0.898 48 H 0.072 0.928 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -7.973 -18.996 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.314 5.314 5 C -0.401 4.401 6 H 0.074 0.926 7 C -0.226 4.226 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.221 1.221 12 H -0.211 1.211 13 C 0.019 3.981 14 C -0.009 4.009 15 N -0.352 5.352 16 C 0.333 3.667 17 O -0.427 6.427 18 C 0.001 3.999 19 C -0.157 4.157 20 C 0.043 3.957 21 C -0.159 4.159 22 N -0.177 5.177 23 C 0.016 3.984 24 C -0.287 4.287 25 C -0.038 4.038 26 C -0.135 4.135 27 N -0.183 5.183 28 N -0.094 5.094 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.259 0.741 42 H 0.218 0.782 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.208 0.792 47 H 0.120 0.880 48 H 0.091 0.909 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.601 -8.163 -18.202 20.118 hybrid contribution 0.788 0.363 0.896 1.247 sum 3.389 -7.799 -17.306 19.283 Atomic orbital electron populations 1.21652 0.94150 1.01872 1.01997 1.22024 0.96529 0.98551 1.00338 1.21091 0.83121 0.94713 0.99160 1.43816 1.00899 1.85341 1.01393 1.19205 1.06675 1.22228 0.91990 0.92636 1.25806 1.02209 0.94716 0.99913 1.70079 1.26143 1.17877 1.41113 0.85503 0.79182 0.78044 0.79545 1.19278 1.22070 1.21074 1.20841 0.98590 0.91865 0.86809 1.22121 0.94556 1.01630 0.82607 1.46474 1.54602 1.09887 1.24279 1.17914 0.79932 0.84742 0.84078 1.90807 1.58527 1.31603 1.61736 1.20807 1.00540 0.84497 0.94104 1.22431 0.98200 0.97750 0.97344 1.22679 0.88684 0.95336 0.88993 1.21067 1.03439 0.88600 1.02818 1.67905 1.21179 0.96354 1.32280 1.21180 0.95768 0.95974 0.85494 1.21256 1.14619 0.86817 1.06005 1.22899 0.92241 0.98817 0.89816 1.20523 1.05633 0.82925 1.04398 1.77300 1.31126 0.83552 1.26299 1.47353 1.38361 1.05957 1.17689 0.92265 0.92090 0.92474 0.93706 0.93951 0.93928 0.93880 0.93797 0.91239 0.94116 0.92243 0.94062 0.74097 0.78219 0.86866 0.88621 0.86917 0.79190 0.87983 0.90942 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.13 -4.87 6.26 30.60 0.19 -4.68 16 3 C 0.14 6.07 5.71 86.38 0.49 6.56 16 4 N -0.59 -29.68 2.43 -701.97 -1.71 -31.39 16 5 C -0.27 -14.89 9.42 84.03 0.79 -14.10 16 6 H 0.06 3.07 7.92 -2.91 -0.02 3.05 16 7 C -0.03 -1.56 5.00 84.86 0.42 -1.14 16 8 N -0.91 -52.58 11.44 21.65 0.25 -52.34 16 9 Si 0.95 45.21 29.60 68.60 2.03 47.24 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 13 C 0.15 6.99 5.50 86.38 0.47 7.47 16 14 C 0.12 5.18 5.97 86.38 0.52 5.69 16 15 N -0.70 -28.13 5.55 -466.29 -2.59 -30.72 16 16 C 0.55 20.75 7.79 86.69 0.68 21.43 16 17 O -0.55 -22.40 16.36 -4.02 -0.07 -22.46 16 18 C 0.12 3.68 6.82 40.36 0.28 3.95 16 19 C -0.13 -3.00 9.27 22.41 0.21 -2.79 16 20 C 0.21 3.94 6.82 43.12 0.29 4.24 16 21 C -0.10 -0.84 10.18 71.24 0.73 -0.11 16 22 N -0.46 -11.23 10.36 -180.73 -1.87 -13.10 16 23 C 0.24 6.88 7.93 133.23 1.06 7.94 16 24 C -0.26 -6.26 10.82 22.53 0.24 -6.02 16 25 C 0.12 3.10 7.15 42.67 0.31 3.40 16 26 C -0.08 -1.35 10.43 71.23 0.74 -0.60 16 27 N -0.35 -11.70 9.92 -47.89 -0.48 -12.18 16 28 N -0.32 -10.25 3.94 -181.98 -0.72 -10.97 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.66 6.65 -2.38 -0.02 1.65 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 35 H 0.04 1.70 7.86 -2.38 -0.02 1.68 16 36 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.07 3.80 5.53 -2.39 -0.01 3.78 16 38 H 0.04 1.82 7.83 -2.39 -0.02 1.80 16 39 H 0.06 2.59 6.65 -2.38 -0.02 2.57 16 40 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.42 16.56 5.50 -92.71 -0.51 16.05 16 42 H 0.20 3.54 7.65 -2.91 -0.02 3.52 16 43 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.11 0.44 8.09 -2.39 -0.02 0.43 16 46 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 47 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -72.40 405.41 3.44 -68.96 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.46 Total: 28.84 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 8.13 Total: 28.11 kcal Atomic # 7 Polarization: -143.58 SS G_CDS: -7.11 Total: -150.69 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.07 Total: -22.46 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.40 3.44 -68.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731873902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.468 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds