Wall clock time and date at job start Wed Apr 1 2020 03:04:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46504 * 119.99880 * 2 1
4 4 C 1.53005 * 109.46931 * 270.00241 * 3 2 1
5 5 C 1.53003 * 109.47203 * 299.99880 * 4 3 2
6 6 C 1.52992 * 109.47077 * 59.99810 * 4 3 2
7 7 C 1.53002 * 109.47021 * 180.02562 * 4 3 2
8 8 N 1.46493 * 109.46989 * 180.02562 * 7 4 3
9 9 C 1.36939 * 119.99920 * 179.97438 * 8 7 4
10 10 H 1.08004 * 119.99863 * 0.02562 * 9 8 7
11 11 C 1.38815 * 120.00134 * 179.97438 * 9 8 7
12 12 N 1.31618 * 120.00021 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 119.99753 * 180.02562 * 11 9 8
14 14 H 1.48499 * 109.47283 * 0.02562 * 13 11 9
15 15 H 1.48498 * 109.47161 * 120.00646 * 13 11 9
16 16 H 1.48504 * 109.46820 * 240.00230 * 13 11 9
17 17 C 1.34774 * 120.00156 * 180.02562 * 2 1 3
18 18 O 1.21573 * 119.99904 * 185.08832 * 17 2 1
19 19 C 1.47683 * 120.00149 * 5.08763 * 17 2 1
20 20 C 1.40184 * 120.41149 * 141.03671 * 19 17 2
21 21 N 1.31190 * 121.37333 * 179.69693 * 20 19 17
22 22 C 1.32925 * 121.84955 * 0.28185 * 21 20 19
23 23 C 1.41073 * 120.19704 * 359.97438 * 22 21 20
24 24 C 1.45977 * 106.43045 * 179.97438 * 23 22 21
25 25 N 1.30207 * 107.58817 * 359.97438 * 24 23 22
26 26 N 1.36627 * 133.27220 * 179.97438 * 22 21 20
27 27 C 1.46496 * 125.34084 * 359.97438 * 26 22 21
28 28 C 1.39508 * 120.40991 * 321.30089 * 19 17 2
29 29 H 1.09002 * 109.47245 * 264.78940 * 1 2 3
30 30 H 1.08998 * 109.47684 * 24.79128 * 1 2 3
31 31 H 1.09001 * 109.46873 * 144.79251 * 1 2 3
32 32 H 1.08998 * 109.46884 * 30.00202 * 3 2 1
33 33 H 1.08992 * 109.47137 * 150.00283 * 3 2 1
34 34 H 1.08999 * 109.46968 * 60.00041 * 5 4 3
35 35 H 1.08999 * 109.47215 * 180.02562 * 5 4 3
36 36 H 1.09005 * 109.46872 * 300.00236 * 5 4 3
37 37 H 1.09005 * 109.47517 * 60.00351 * 6 4 3
38 38 H 1.09009 * 109.47302 * 179.97438 * 6 4 3
39 39 H 1.08997 * 109.47629 * 299.99666 * 6 4 3
40 40 H 1.08998 * 109.46742 * 299.99930 * 7 4 3
41 41 H 1.08997 * 109.46971 * 59.99528 * 7 4 3
42 42 H 0.96994 * 120.00491 * 359.97438 * 8 7 4
43 43 H 0.96993 * 119.99586 * 179.97438 * 12 11 9
44 44 H 1.08006 * 119.31322 * 359.97438 * 20 19 17
45 45 H 1.07997 * 126.20452 * 179.97438 * 24 23 22
46 46 H 1.09005 * 109.46853 * 90.00559 * 27 26 22
47 47 H 1.08998 * 109.47151 * 210.00042 * 27 26 22
48 48 H 1.08998 * 109.47470 * 330.00526 * 27 26 22
49 49 H 1.08001 * 121.02563 * 359.97438 * 28 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4524 1.7105 -1.4426
5 6 3.2793 0.6442 -2.1639
6 6 1.1155 1.8933 -2.1637
7 6 3.2179 3.0352 -1.4426
8 7 3.4615 3.4584 -2.8238
9 6 4.1345 4.6244 -3.0740
10 1 4.4861 5.2318 -2.2531
11 6 4.3658 5.0252 -4.3828
12 7 3.9377 4.2847 -5.3832
13 14 5.2845 6.6154 -4.7240
14 1 5.6567 7.2579 -3.4380
15 1 6.5136 6.3196 -5.5031
16 1 4.4139 7.5327 -5.5025
17 6 2.1389 -1.1672 -0.0005
18 8 3.3510 -1.1692 0.0929
19 6 1.4049 -2.4436 -0.1145
20 6 1.9231 -3.4938 -0.8850
21 7 1.2899 -4.6376 -0.9946
22 6 0.1275 -4.8567 -0.3882
23 6 -0.4623 -3.8472 0.4013
24 6 -1.7112 -4.4017 0.9149
25 7 -1.8202 -5.6158 0.4575
26 7 -0.7165 -5.9300 -0.3410
27 6 -0.5000 -7.2089 -1.0220
28 6 0.1845 -2.6172 0.5388
29 1 -0.3634 -0.0933 1.0234
30 1 -0.3634 0.9329 -0.4309
31 1 -0.3633 -0.8397 -0.5925
32 1 1.6084 2.0284 0.5139
33 1 3.1498 1.1385 0.5138
34 1 2.7343 -0.2998 -2.1638
35 1 3.4613 0.9590 -3.1914
36 1 4.2317 0.5139 -1.6500
37 1 0.5264 2.6530 -1.6499
38 1 1.2971 2.2084 -3.1913
39 1 0.5706 0.9494 -2.1638
40 1 2.6292 3.7950 -0.9286
41 1 4.1703 2.9044 -0.9289
42 1 3.1460 2.9127 -3.5610
43 1 4.0990 4.5650 -6.2976
44 1 2.8654 -3.3601 -1.3955
45 1 -2.4168 -3.8964 1.5577
46 1 0.0518 -7.8814 -0.3652
47 1 -1.4625 -7.6546 -1.2727
48 1 0.0720 -7.0422 -1.9348
49 1 -0.2440 -1.8268 1.1371
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755286031.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:04:41
Heat of formation + Delta-G solvation = 72.756152 kcal
Electronic energy + Delta-G solvation = -30389.171687 eV
Core-core repulsion = 26353.084080 eV
Total energy + Delta-G solvation = -4036.087607 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.72882 -41.32746 -39.24288 -38.37028 -36.51673 -35.24022 -34.62053 -32.91804
-32.02120 -31.37871 -28.89725 -28.29272 -27.88152 -27.31668 -26.75890 -25.09616
-24.80040 -23.77912 -22.02552 -20.91827 -19.84339 -19.11685 -19.00770 -18.27454
-17.81438 -17.10829 -16.93765 -16.75736 -16.59900 -16.34965 -15.54753 -15.42769
-15.26175 -15.03060 -14.77174 -14.65010 -14.43382 -14.23297 -14.08398 -13.97321
-13.75120 -13.68306 -13.46696 -13.29921 -13.01157 -12.91561 -12.77009 -12.51155
-12.41979 -12.24926 -12.22096 -12.04573 -11.66072 -11.63197 -11.51262 -11.44798
-11.08269 -10.92143 -10.52583 -10.18303 -9.59300 -9.37293 -8.94122 -7.92571
-5.19738 -0.33800 -0.21894 1.08233 1.39676 1.47450 1.48694 1.58570
1.67525 2.02929 2.58170 2.63346 3.05027 3.17114 3.41064 3.45225
3.58176 3.72657 3.88232 3.91653 4.00317 4.03362 4.29049 4.33481
4.34743 4.36086 4.39946 4.47574 4.52559 4.62408 4.63166 4.67697
4.83373 4.84489 4.87496 4.95236 4.97080 4.99287 5.12554 5.19726
5.21565 5.22558 5.38789 5.48014 5.52081 5.57738 5.59949 5.66727
6.30352 6.31144 6.39930 6.74159 7.15940 7.36779 8.15118 8.37894
9.31499
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.024107 B = 0.002109 C = 0.002061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1161.232121 B =13271.015576 C =13580.019229
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.054 3.946
2 N -0.598 5.598
3 C 0.136 3.864
4 C -0.077 4.077
5 C -0.112 4.112
6 C -0.127 4.127
7 C 0.162 3.838
8 N -0.740 5.740
9 C -0.239 4.239
10 H 0.075 0.925
11 C -0.079 4.079
12 N -0.971 5.971
13 Si 0.972 3.028
14 H -0.266 1.266
15 H -0.297 1.297
16 H -0.292 1.292
17 C 0.569 3.431
18 O -0.568 6.568
19 C -0.235 4.235
20 C 0.213 3.787
21 N -0.526 5.526
22 C 0.303 3.697
23 C -0.245 4.245
24 C 0.114 3.886
25 N -0.265 5.265
26 N -0.404 5.404
27 C 0.104 3.896
28 C 0.060 3.940
29 H 0.096 0.904
30 H 0.091 0.909
31 H 0.078 0.922
32 H 0.110 0.890
33 H 0.071 0.929
34 H 0.049 0.951
35 H 0.028 0.972
36 H 0.038 0.962
37 H 0.068 0.932
38 H 0.028 0.972
39 H 0.070 0.930
40 H 0.032 0.968
41 H 0.011 0.989
42 H 0.375 0.625
43 H 0.250 0.750
44 H 0.168 0.832
45 H 0.252 0.748
46 H 0.079 0.921
47 H 0.104 0.896
48 H 0.089 0.911
49 H 0.192 0.808
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.414 -19.637 16.844 31.186
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 N -0.328 5.328
3 C 0.013 3.987
4 C -0.078 4.078
5 C -0.170 4.170
6 C -0.184 4.184
7 C 0.035 3.965
8 N -0.383 5.383
9 C -0.371 4.371
10 H 0.093 0.907
11 C -0.271 4.271
12 N -0.622 5.622
13 Si 0.802 3.198
14 H -0.190 1.190
15 H -0.224 1.224
16 H -0.220 1.220
17 C 0.357 3.643
18 O -0.448 6.448
19 C -0.243 4.243
20 C 0.043 3.957
21 N -0.241 5.241
22 C 0.064 3.936
23 C -0.255 4.255
24 C -0.085 4.085
25 N -0.076 5.076
26 N -0.194 5.194
27 C -0.036 4.036
28 C 0.032 3.968
29 H 0.114 0.886
30 H 0.109 0.891
31 H 0.097 0.903
32 H 0.128 0.872
33 H 0.089 0.911
34 H 0.068 0.932
35 H 0.047 0.953
36 H 0.057 0.943
37 H 0.087 0.913
38 H 0.047 0.953
39 H 0.089 0.911
40 H 0.050 0.950
41 H 0.029 0.971
42 H 0.209 0.791
43 H 0.058 0.942
44 H 0.185 0.815
45 H 0.268 0.732
46 H 0.098 0.902
47 H 0.123 0.877
48 H 0.108 0.892
49 H 0.208 0.792
Dipole moment (debyes) X Y Z Total
from point charges -17.143 -21.477 16.369 31.985
hybrid contribution 1.216 1.756 -0.837 2.294
sum -15.927 -19.721 15.532 29.729
Atomic orbital electron populations
1.22619 0.77328 1.04985 1.03790 1.47672 1.08330 1.04775 1.72047
1.21418 0.98057 0.84747 0.94517 1.21015 0.96040 0.94225 0.96544
1.21576 0.98988 0.97450 0.98949 1.21796 0.95480 1.01635 0.99487
1.20755 0.96046 0.93545 0.86149 1.42599 1.67798 1.25027 1.02886
1.19698 1.26653 0.98795 0.91951 0.90662 1.25546 1.03518 1.02428
0.95593 1.69827 1.53552 1.40694 0.98163 0.85079 0.77477 0.79439
0.77821 1.18983 1.22434 1.21963 1.18095 0.86462 0.83767 0.75952
1.90815 1.15300 1.87573 1.51123 1.20496 0.99103 0.96551 1.08119
1.22818 0.96776 0.85005 0.91065 1.66722 1.07907 1.24122 1.25356
1.19550 0.90591 0.89415 0.94088 1.20718 1.00374 0.96696 1.07715
1.25902 0.94805 0.90203 0.97550 1.76744 1.05329 1.17579 1.07946
1.48436 1.15227 1.12501 1.43239 1.22029 1.04387 0.80245 0.96939
1.21875 0.89033 0.94863 0.91013 0.88602 0.89088 0.90341 0.87170
0.91061 0.93206 0.95309 0.94308 0.91349 0.95280 0.91114 0.95037
0.97139 0.79121 0.94161 0.81498 0.73244 0.90214 0.87717 0.89223
0.79151
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.53 7.62 127.77 0.97 1.51 16
2 N -0.60 -11.53 2.40 -850.38 -2.04 -13.57 16
3 C 0.14 3.20 4.59 86.38 0.40 3.60 16
4 C -0.08 -2.40 0.60 -52.18 -0.03 -2.44 16
5 C -0.11 -4.08 7.05 71.98 0.51 -3.57 16
6 C -0.13 -3.64 7.07 71.98 0.51 -3.13 16
7 C 0.16 6.45 5.15 86.38 0.44 6.89 16
8 N -0.74 -37.95 5.00 -343.46 -1.72 -39.66 16
9 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16
10 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16
11 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16
12 N -0.97 -60.55 13.06 21.65 0.28 -60.26 16
13 Si 0.97 46.98 29.55 68.60 2.03 49.00 16
14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
15 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16
16 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16
17 C 0.57 13.75 5.61 86.74 0.49 14.24 16
18 O -0.57 -18.74 15.09 -3.95 -0.06 -18.79 16
19 C -0.23 -4.71 5.26 -20.00 -0.11 -4.81 16
20 C 0.21 4.93 10.77 85.26 0.92 5.85 16
21 N -0.53 -12.53 10.37 -191.96 -1.99 -14.52 16
22 C 0.30 6.38 7.96 134.18 1.07 7.45 16
23 C -0.24 -3.74 6.36 -20.24 -0.13 -3.86 16
24 C 0.11 1.18 12.30 86.94 1.07 2.25 16
25 N -0.26 -4.26 12.39 -53.07 -0.66 -4.92 16
26 N -0.40 -7.46 4.03 -366.45 -1.48 -8.93 16
27 C 0.10 1.29 11.43 127.77 1.46 2.75 16
28 C 0.06 0.78 7.73 22.92 0.18 0.96 16
29 H 0.10 0.29 6.87 -2.39 -0.02 0.28 16
30 H 0.09 0.86 6.28 -2.39 -0.02 0.84 16
31 H 0.08 0.73 5.84 -2.39 -0.01 0.71 16
32 H 0.11 1.94 8.07 -2.39 -0.02 1.93 16
33 H 0.07 1.97 7.36 -2.39 -0.02 1.95 16
34 H 0.05 1.65 6.21 -2.39 -0.01 1.63 16
35 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16
36 H 0.04 1.52 7.85 -2.38 -0.02 1.50 16
37 H 0.07 1.71 8.07 -2.38 -0.02 1.69 16
38 H 0.03 1.06 6.86 -2.38 -0.02 1.04 16
39 H 0.07 1.65 6.07 -2.39 -0.01 1.64 16
40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16
41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16
42 H 0.38 20.58 5.36 -92.71 -0.50 20.08 16
43 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16
44 H 0.17 3.90 8.05 -2.91 -0.02 3.88 16
45 H 0.25 -0.13 8.06 -2.91 -0.02 -0.16 16
46 H 0.08 0.83 8.14 -2.38 -0.02 0.82 16
47 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16
48 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
49 H 0.19 0.91 5.32 -2.91 -0.02 0.90 16
Total: -1.00 -81.22 388.17 3.91 -77.31
By element:
Atomic # 1 Polarization: 23.02 SS G_CDS: 0.49 Total: 23.51 kcal
Atomic # 6 Polarization: 1.79 SS G_CDS: 9.05 Total: 10.84 kcal
Atomic # 7 Polarization: -134.26 SS G_CDS: -7.60 Total: -141.86 kcal
Atomic # 8 Polarization: -18.74 SS G_CDS: -0.06 Total: -18.79 kcal
Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal
Total: -81.22 3.91 -77.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755286031.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.069 kcal
(2) G-P(sol) polarization free energy of solvation -81.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.756 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds