Wall clock time and date at job start Wed Apr 1 2020 03:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99963 * 2 1 4 4 C 1.53004 * 109.46640 * 269.99626 * 3 2 1 5 5 C 1.52994 * 109.47235 * 299.99746 * 4 3 2 6 6 C 1.53004 * 109.47202 * 60.00218 * 4 3 2 7 7 C 1.53004 * 109.46663 * 179.97438 * 4 3 2 8 8 N 1.46502 * 109.46845 * 179.97438 * 7 4 3 9 9 C 1.36932 * 120.00112 * 179.97438 * 8 7 4 10 10 H 1.08009 * 119.99899 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00312 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99610 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00071 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47126 * 90.00081 * 13 11 9 15 15 H 1.48500 * 109.46857 * 209.99744 * 13 11 9 16 16 H 1.48497 * 109.47097 * 330.00111 * 13 11 9 17 17 C 1.34777 * 120.00002 * 179.97438 * 2 1 3 18 18 O 1.21540 * 119.99590 * 182.05739 * 17 2 1 19 19 C 1.47965 * 120.00054 * 2.06316 * 17 2 1 20 20 C 1.39731 * 119.43234 * 172.66054 * 19 17 2 21 21 C 1.36983 * 119.60447 * 179.97438 * 20 19 17 22 22 C 1.39901 * 118.35868 * 0.02562 * 21 20 19 23 23 N 1.35431 * 133.80843 * 179.97438 * 22 21 20 24 24 C 1.30219 * 109.57404 * 180.02562 * 23 22 21 25 25 N 1.35994 * 110.17997 * 0.02562 * 24 23 22 26 26 C 1.46497 * 126.29298 * 179.97438 * 25 24 23 27 27 C 1.37943 * 107.41533 * 359.97438 * 25 24 23 28 28 N 1.31885 * 133.83347 * 179.97438 * 27 25 24 29 29 H 1.08995 * 109.47032 * 263.72404 * 1 2 3 30 30 H 1.09001 * 109.46709 * 23.72624 * 1 2 3 31 31 H 1.08994 * 109.47081 * 143.72434 * 1 2 3 32 32 H 1.09000 * 109.47093 * 29.99423 * 3 2 1 33 33 H 1.09001 * 109.46831 * 150.00000 * 3 2 1 34 34 H 1.09000 * 109.47107 * 60.00771 * 5 4 3 35 35 H 1.09000 * 109.47171 * 179.97438 * 5 4 3 36 36 H 1.08989 * 109.47634 * 300.00188 * 5 4 3 37 37 H 1.09007 * 109.46810 * 59.99578 * 6 4 3 38 38 H 1.09000 * 109.47155 * 179.97438 * 6 4 3 39 39 H 1.08993 * 109.46973 * 299.99911 * 6 4 3 40 40 H 1.09000 * 109.47137 * 299.99838 * 7 4 3 41 41 H 1.08997 * 109.46993 * 60.00826 * 7 4 3 42 42 H 0.97000 * 120.00260 * 0.02562 * 8 7 4 43 43 H 0.97000 * 119.99367 * 180.02562 * 12 11 9 44 44 H 1.08000 * 120.19655 * 0.02562 * 20 19 17 45 45 H 1.08006 * 120.82081 * 180.02562 * 21 20 19 46 46 H 1.08003 * 124.91055 * 179.74052 * 24 23 22 47 47 H 1.08999 * 109.47499 * 90.02715 * 26 25 24 48 48 H 1.09010 * 109.47201 * 210.02562 * 26 25 24 49 49 H 1.08998 * 109.46984 * 330.02176 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2795 0.6440 -2.1637 6 6 1.1157 1.8932 -2.1639 7 6 3.2170 3.0357 -1.4426 8 7 3.4617 3.4582 -2.8238 9 6 4.1340 4.6245 -3.0742 10 1 4.4843 5.2328 -2.2532 11 6 4.3655 5.0252 -4.3829 12 7 3.9392 4.2836 -5.3833 13 14 5.2833 6.6160 -4.7243 14 1 6.7392 6.3379 -4.8145 15 1 4.8096 7.1951 -6.0071 16 1 5.0307 7.5793 -3.6229 17 6 2.1389 -1.1672 0.0005 18 8 3.3537 -1.1674 0.0383 19 6 1.3998 -2.4482 -0.0450 20 6 2.1066 -3.6436 -0.1995 21 6 1.4260 -4.8317 -0.2416 22 6 0.0319 -4.8032 -0.1275 23 7 -0.9285 -5.7581 -0.1287 24 6 -2.0974 -5.2013 0.0101 25 7 -1.9653 -3.8514 0.1090 26 6 -3.0525 -2.8835 0.2740 27 6 -0.6194 -3.5611 0.0254 28 7 0.0775 -2.4419 0.0602 29 1 -0.3633 -0.1123 1.0215 30 1 -0.3633 0.9408 -0.4135 31 1 -0.3633 -0.8284 -0.6080 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 2.7344 -0.2999 -2.1637 35 1 3.4607 0.9584 -3.1915 36 1 4.2318 0.5137 -1.6499 37 1 0.5266 2.6529 -1.6500 38 1 1.2973 2.2082 -3.1914 39 1 0.5707 0.9493 -2.1638 40 1 2.6275 3.7951 -0.9290 41 1 4.1694 2.9057 -0.9287 42 1 3.1469 2.9121 -3.5611 43 1 4.1012 4.5634 -6.2978 44 1 3.1832 -3.6310 -0.2844 45 1 1.9526 -5.7672 -0.3600 46 1 -3.0365 -5.7341 0.0376 47 1 -3.2406 -2.7258 1.3360 48 1 -2.7707 -1.9379 -0.1894 49 1 -3.9552 -3.2664 -0.2020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755286682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:55 Heat of formation + Delta-G solvation = 92.550862 kcal Electronic energy + Delta-G solvation = -30723.129450 eV Core-core repulsion = 26687.900206 eV Total energy + Delta-G solvation = -4035.229244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.78549 -40.45830 -38.47973 -37.12642 -35.31661 -34.80001 -33.07484 -32.21618 -30.54069 -29.97055 -27.84429 -27.57670 -26.81889 -26.04503 -25.47462 -24.43734 -23.36135 -22.36729 -21.31764 -20.15526 -18.39577 -18.21373 -17.89852 -17.18492 -17.09630 -16.63045 -16.04382 -15.68084 -15.23485 -15.00621 -14.52338 -14.24764 -14.09442 -13.90735 -13.74137 -13.66141 -13.36701 -13.16146 -13.06434 -12.90831 -12.72494 -12.56913 -12.44009 -12.17636 -11.98990 -11.27680 -11.21938 -11.13359 -11.08021 -10.91986 -10.77414 -10.64832 -10.30910 -10.19554 -10.12070 -9.82966 -9.63193 -9.26114 -9.12161 -8.90586 -8.80329 -8.45143 -6.82866 -5.70065 -2.97252 0.10950 0.88192 1.82919 2.13549 2.79137 2.94318 3.47846 3.52655 3.54033 3.54452 3.61979 3.79938 4.09436 4.27687 4.54250 4.60962 4.64310 4.65813 4.79756 4.97158 5.15750 5.19985 5.24355 5.30288 5.45136 5.48051 5.61764 5.63756 5.69707 5.76170 5.79387 5.95348 5.98601 6.03432 6.17219 6.22006 6.23697 6.36302 6.40848 6.50778 6.59800 6.68580 6.79863 6.84028 7.00468 7.04104 7.22345 7.25089 7.40958 7.76339 8.13696 8.49602 9.60596 10.20322 10.55115 11.53170 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.002251 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.433206 B =12437.844606 C =12774.441312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.586 5.586 3 C 0.125 3.875 4 C -0.086 4.086 5 C -0.124 4.124 6 C -0.135 4.135 7 C 0.166 3.834 8 N -0.728 5.728 9 C -0.234 4.234 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.906 3.094 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.283 1.283 17 C 0.569 3.431 18 O -0.521 6.521 19 C 0.124 3.876 20 C -0.124 4.124 21 C -0.026 4.026 22 C 0.020 3.980 23 N -0.491 5.491 24 C 0.280 3.720 25 N -0.484 5.484 26 C 0.079 3.921 27 C 0.227 3.773 28 N -0.442 5.442 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.223 0.777 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.484 -20.076 14.420 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.317 5.317 3 C 0.002 3.998 4 C -0.087 4.087 5 C -0.181 4.181 6 C -0.192 4.192 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.366 4.366 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.209 1.209 17 C 0.354 3.646 18 O -0.397 6.397 19 C -0.025 4.025 20 C -0.148 4.148 21 C -0.053 4.053 22 C -0.101 4.101 23 N -0.210 5.210 24 C -0.007 4.007 25 N -0.176 5.176 26 C -0.062 4.062 27 C -0.009 4.009 28 N -0.159 5.159 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.239 0.761 47 H 0.096 0.904 48 H 0.110 0.890 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.187 -19.865 14.506 30.007 hybrid contribution 0.283 0.851 -0.535 1.044 sum -16.905 -19.014 13.972 29.026 Atomic orbital electron populations 1.22439 0.78778 1.03423 1.02170 1.47629 1.07634 1.05587 1.70816 1.21663 0.97496 0.83306 0.97306 1.21109 0.96465 0.97014 0.94099 1.21717 0.99251 0.96202 1.00959 1.21873 0.95772 0.99874 1.01729 1.20583 0.95706 0.91136 0.88842 1.42391 1.68139 1.25754 1.01002 1.19244 1.27526 0.98099 0.91715 0.91273 1.24718 1.01874 0.98987 0.95600 1.69662 1.51739 1.38916 0.98094 0.86193 0.79564 0.83275 0.77198 1.21803 1.21892 1.20850 1.17668 0.86579 0.82607 0.77706 1.90832 1.12407 1.86429 1.49987 1.21064 0.87512 0.94777 0.99098 1.21582 1.02574 0.90750 0.99852 1.20475 0.89934 0.99235 0.95691 1.19867 0.94879 0.90111 1.05275 1.70447 0.97655 1.31179 1.21735 1.25525 0.99245 0.79035 0.96853 1.45054 1.04537 1.08398 1.59648 1.22089 0.87902 0.92676 1.03575 1.19084 0.85594 0.91933 1.04283 1.66950 1.07271 1.26822 1.14819 0.93143 0.91541 0.88213 0.90381 0.89539 0.94506 0.92076 0.92388 0.93268 0.91515 0.93636 0.96476 0.96198 0.78008 0.93629 0.82405 0.83346 0.76063 0.90356 0.88987 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 7.99 59.85 0.48 1.26 16 2 N -0.59 -7.74 2.40 -182.65 -0.44 -8.18 16 3 C 0.12 1.79 4.58 -4.04 -0.02 1.77 16 4 C -0.09 -1.46 0.60 -154.51 -0.09 -1.55 16 5 C -0.12 -2.31 7.00 37.15 0.26 -2.05 16 6 C -0.14 -2.20 7.07 37.16 0.26 -1.94 16 7 C 0.17 3.43 5.15 -4.04 -0.02 3.41 16 8 N -0.73 -18.76 5.00 -59.90 -0.30 -19.06 16 9 C -0.23 -6.69 9.99 -15.06 -0.15 -6.85 16 10 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 13 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.57 8.22 5.99 -12.27 -0.07 8.15 16 18 O -0.52 -8.86 14.24 5.33 0.08 -8.79 16 19 C 0.12 1.56 6.62 -82.97 -0.55 1.01 16 20 C -0.12 -1.38 9.55 -39.48 -0.38 -1.76 16 21 C -0.03 -0.26 10.16 -39.41 -0.40 -0.66 16 22 C 0.02 0.22 7.25 -84.58 -0.61 -0.39 16 23 N -0.49 -4.91 11.27 -11.93 -0.13 -5.05 16 24 C 0.28 1.75 12.49 -89.73 -1.12 0.63 16 25 N -0.48 -3.40 3.20 -124.97 -0.40 -3.80 16 26 C 0.08 0.25 11.19 59.85 0.67 0.92 16 27 C 0.23 2.39 8.01 -155.74 -1.25 1.14 16 28 N -0.44 -5.02 6.02 -8.83 -0.05 -5.07 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 31 H 0.10 1.07 5.26 -52.23 -0.27 0.80 16 32 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.09 1.33 7.39 -51.93 -0.38 0.95 16 34 H 0.04 0.64 6.18 -51.93 -0.32 0.32 16 35 H 0.06 1.28 6.86 -51.93 -0.36 0.92 16 36 H 0.06 1.13 7.77 -51.94 -0.40 0.73 16 37 H 0.05 0.74 8.07 -51.92 -0.42 0.33 16 38 H 0.07 1.29 6.86 -51.93 -0.36 0.93 16 39 H 0.04 0.66 6.09 -51.93 -0.32 0.34 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.38 10.40 5.36 -40.82 -0.22 10.19 16 43 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.16 1.63 7.63 -52.49 -0.40 1.23 16 45 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 46 H 0.22 0.24 8.06 -52.48 -0.42 -0.19 16 47 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 48 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 49 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -36.16 388.20 -9.91 -46.07 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.13 Total: 5.70 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.09 Total: 2.52 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -0.60 Total: -69.21 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.16 -9.91 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755286682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.621 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds