Wall clock time and date at job start Wed Apr 1 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99963 * 2 1 4 4 C 1.53004 * 109.46640 * 269.99626 * 3 2 1 5 5 C 1.52994 * 109.47235 * 299.99746 * 4 3 2 6 6 C 1.53004 * 109.47202 * 60.00218 * 4 3 2 7 7 C 1.53004 * 109.46663 * 179.97438 * 4 3 2 8 8 N 1.46502 * 109.46845 * 179.97438 * 7 4 3 9 9 C 1.36932 * 120.00112 * 179.97438 * 8 7 4 10 10 H 1.08009 * 119.99899 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00312 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99610 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00071 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47126 * 90.00081 * 13 11 9 15 15 H 1.48500 * 109.46857 * 209.99744 * 13 11 9 16 16 H 1.48497 * 109.47097 * 330.00111 * 13 11 9 17 17 C 1.34777 * 120.00002 * 179.97438 * 2 1 3 18 18 O 1.21540 * 119.99590 * 182.05739 * 17 2 1 19 19 C 1.47965 * 120.00054 * 2.06316 * 17 2 1 20 20 C 1.39731 * 119.43234 * 172.66054 * 19 17 2 21 21 C 1.36983 * 119.60447 * 179.97438 * 20 19 17 22 22 C 1.39901 * 118.35868 * 0.02562 * 21 20 19 23 23 N 1.35431 * 133.80843 * 179.97438 * 22 21 20 24 24 C 1.30219 * 109.57404 * 180.02562 * 23 22 21 25 25 N 1.35994 * 110.17997 * 0.02562 * 24 23 22 26 26 C 1.46497 * 126.29298 * 179.97438 * 25 24 23 27 27 C 1.37943 * 107.41533 * 359.97438 * 25 24 23 28 28 N 1.31885 * 133.83347 * 179.97438 * 27 25 24 29 29 H 1.08995 * 109.47032 * 263.72404 * 1 2 3 30 30 H 1.09001 * 109.46709 * 23.72624 * 1 2 3 31 31 H 1.08994 * 109.47081 * 143.72434 * 1 2 3 32 32 H 1.09000 * 109.47093 * 29.99423 * 3 2 1 33 33 H 1.09001 * 109.46831 * 150.00000 * 3 2 1 34 34 H 1.09000 * 109.47107 * 60.00771 * 5 4 3 35 35 H 1.09000 * 109.47171 * 179.97438 * 5 4 3 36 36 H 1.08989 * 109.47634 * 300.00188 * 5 4 3 37 37 H 1.09007 * 109.46810 * 59.99578 * 6 4 3 38 38 H 1.09000 * 109.47155 * 179.97438 * 6 4 3 39 39 H 1.08993 * 109.46973 * 299.99911 * 6 4 3 40 40 H 1.09000 * 109.47137 * 299.99838 * 7 4 3 41 41 H 1.08997 * 109.46993 * 60.00826 * 7 4 3 42 42 H 0.97000 * 120.00260 * 0.02562 * 8 7 4 43 43 H 0.97000 * 119.99367 * 180.02562 * 12 11 9 44 44 H 1.08000 * 120.19655 * 0.02562 * 20 19 17 45 45 H 1.08006 * 120.82081 * 180.02562 * 21 20 19 46 46 H 1.08003 * 124.91055 * 179.74052 * 24 23 22 47 47 H 1.08999 * 109.47499 * 90.02715 * 26 25 24 48 48 H 1.09010 * 109.47201 * 210.02562 * 26 25 24 49 49 H 1.08998 * 109.46984 * 330.02176 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2795 0.6440 -2.1637 6 6 1.1157 1.8932 -2.1639 7 6 3.2170 3.0357 -1.4426 8 7 3.4617 3.4582 -2.8238 9 6 4.1340 4.6245 -3.0742 10 1 4.4843 5.2328 -2.2532 11 6 4.3655 5.0252 -4.3829 12 7 3.9392 4.2836 -5.3833 13 14 5.2833 6.6160 -4.7243 14 1 6.7392 6.3379 -4.8145 15 1 4.8096 7.1951 -6.0071 16 1 5.0307 7.5793 -3.6229 17 6 2.1389 -1.1672 0.0005 18 8 3.3537 -1.1674 0.0383 19 6 1.3998 -2.4482 -0.0450 20 6 2.1066 -3.6436 -0.1995 21 6 1.4260 -4.8317 -0.2416 22 6 0.0319 -4.8032 -0.1275 23 7 -0.9285 -5.7581 -0.1287 24 6 -2.0974 -5.2013 0.0101 25 7 -1.9653 -3.8514 0.1090 26 6 -3.0525 -2.8835 0.2740 27 6 -0.6194 -3.5611 0.0254 28 7 0.0775 -2.4419 0.0602 29 1 -0.3633 -0.1123 1.0215 30 1 -0.3633 0.9408 -0.4135 31 1 -0.3633 -0.8284 -0.6080 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 2.7344 -0.2999 -2.1637 35 1 3.4607 0.9584 -3.1915 36 1 4.2318 0.5137 -1.6499 37 1 0.5266 2.6529 -1.6500 38 1 1.2973 2.2082 -3.1914 39 1 0.5707 0.9493 -2.1638 40 1 2.6275 3.7951 -0.9290 41 1 4.1694 2.9057 -0.9287 42 1 3.1469 2.9121 -3.5611 43 1 4.1012 4.5634 -6.2978 44 1 3.1832 -3.6310 -0.2844 45 1 1.9526 -5.7672 -0.3600 46 1 -3.0365 -5.7341 0.0376 47 1 -3.2406 -2.7258 1.3360 48 1 -2.7707 -1.9379 -0.1894 49 1 -3.9552 -3.2664 -0.2020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755286682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:54 Heat of formation + Delta-G solvation = 71.135634 kcal Electronic energy + Delta-G solvation = -30724.058084 eV Core-core repulsion = 26687.900206 eV Total energy + Delta-G solvation = -4036.157878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.44321 -41.50893 -39.45557 -38.42000 -36.54455 -35.58928 -34.82184 -32.98776 -32.22052 -31.09614 -28.89955 -28.21220 -28.02318 -27.29963 -27.08339 -25.42812 -24.52874 -23.78977 -21.96075 -21.16868 -19.89286 -19.15296 -18.92811 -18.70900 -17.89021 -17.36003 -17.15734 -16.80447 -16.53234 -16.00075 -15.68986 -15.55247 -15.42364 -15.14860 -14.73511 -14.58421 -14.51337 -14.20137 -14.15372 -13.88318 -13.86786 -13.67984 -13.44274 -13.34257 -13.07191 -12.94446 -12.78191 -12.58080 -12.48102 -12.27793 -12.11597 -11.90981 -11.81973 -11.67147 -11.60781 -11.53819 -11.19579 -10.92336 -10.10576 -9.85449 -9.66449 -9.50664 -8.95736 -7.93050 -5.20683 -0.66909 0.09649 1.28107 1.41008 1.46844 1.49296 1.57408 1.88838 1.97641 2.57551 2.73652 2.84784 3.21837 3.40234 3.45295 3.64329 3.83415 3.88680 3.90797 3.96738 4.11994 4.21183 4.27925 4.44789 4.45809 4.48081 4.49113 4.55591 4.68115 4.77932 4.79619 4.82047 4.86220 4.92042 4.94766 4.96600 5.10462 5.12911 5.15979 5.18276 5.20924 5.42627 5.44148 5.49837 5.53729 5.60989 5.89533 6.29257 6.29717 6.51316 6.63692 7.06746 7.35796 8.13170 8.36886 9.30901 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.002251 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.433206 B =12437.844606 C =12774.441312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.585 5.585 3 C 0.133 3.867 4 C -0.076 4.076 5 C -0.110 4.110 6 C -0.125 4.125 7 C 0.164 3.836 8 N -0.739 5.739 9 C -0.241 4.241 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.974 3.026 14 H -0.290 1.290 15 H -0.295 1.295 16 H -0.268 1.268 17 C 0.565 3.435 18 O -0.557 6.557 19 C 0.098 3.902 20 C -0.129 4.129 21 C -0.031 4.031 22 C 0.008 3.992 23 N -0.531 5.531 24 C 0.304 3.696 25 N -0.481 5.481 26 C 0.072 3.928 27 C 0.208 3.792 28 N -0.436 5.436 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.013 0.987 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.156 0.844 45 H 0.167 0.833 46 H 0.276 0.724 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.410 -20.465 15.904 32.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.315 5.315 3 C 0.010 3.990 4 C -0.078 4.078 5 C -0.167 4.167 6 C -0.182 4.182 7 C 0.037 3.963 8 N -0.383 5.383 9 C -0.373 4.373 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.623 5.623 13 Si 0.803 3.197 14 H -0.217 1.217 15 H -0.222 1.222 16 H -0.193 1.193 17 C 0.352 3.648 18 O -0.436 6.436 19 C -0.050 4.050 20 C -0.153 4.153 21 C -0.058 4.058 22 C -0.114 4.114 23 N -0.250 5.250 24 C 0.019 3.981 25 N -0.172 5.172 26 C -0.068 4.068 27 C -0.030 4.030 28 N -0.152 5.152 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.174 0.826 45 H 0.184 0.816 46 H 0.291 0.709 47 H 0.108 0.892 48 H 0.102 0.898 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.160 -20.233 16.043 32.760 hybrid contribution 1.029 0.832 -0.930 1.617 sum -19.131 -19.401 15.114 31.158 Atomic orbital electron populations 1.22546 0.76842 1.03937 1.03177 1.47695 1.08727 1.04774 1.70271 1.21499 0.97956 0.84607 0.94976 1.21005 0.96104 0.94518 0.96140 1.21553 0.99024 0.97129 0.99009 1.21771 0.95495 1.01347 0.99595 1.20730 0.96045 0.93251 0.86291 1.42585 1.67863 1.25072 1.02761 1.19661 1.26865 0.98773 0.92002 0.90668 1.25561 1.03442 1.02491 0.95528 1.69829 1.53469 1.40771 0.98182 0.85126 0.77915 0.79581 0.77065 1.21733 1.22167 1.19258 1.17995 0.86340 0.83502 0.76962 1.90803 1.13970 1.87069 1.51713 1.20797 0.88258 0.94124 1.01793 1.21591 1.02572 0.90910 1.00208 1.20665 0.90189 0.99512 0.95429 1.20198 0.95484 0.90914 1.04784 1.70468 0.98703 1.31660 1.24205 1.26638 0.99931 0.78749 0.92813 1.45414 1.03816 1.09355 1.58651 1.22418 0.87713 0.91859 1.04786 1.19384 0.87309 0.91519 1.04778 1.66856 1.06653 1.27271 1.14444 0.91721 0.90446 0.88317 0.87549 0.90760 0.93710 0.95103 0.93955 0.91515 0.94927 0.91666 0.95109 0.96905 0.79126 0.94118 0.82596 0.81571 0.70906 0.89160 0.89751 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 7.99 127.77 1.02 2.47 16 2 N -0.58 -14.94 2.40 -850.05 -2.04 -16.98 16 3 C 0.13 3.67 4.58 86.38 0.40 4.06 16 4 C -0.08 -2.60 0.60 -52.18 -0.03 -2.63 16 5 C -0.11 -4.25 7.00 71.98 0.50 -3.75 16 6 C -0.12 -3.97 7.07 71.98 0.51 -3.46 16 7 C 0.16 6.81 5.15 86.38 0.44 7.26 16 8 N -0.74 -38.86 5.00 -343.44 -1.72 -40.58 16 9 C -0.24 -13.87 9.99 84.04 0.84 -13.03 16 10 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 12 N -0.97 -61.16 13.06 21.65 0.28 -60.87 16 13 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 14 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 15 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 C 0.56 16.56 5.99 86.82 0.52 17.08 16 18 O -0.56 -19.73 14.24 -3.84 -0.05 -19.79 16 19 C 0.10 2.48 6.62 41.96 0.28 2.76 16 20 C -0.13 -2.98 9.55 22.34 0.21 -2.76 16 21 C -0.03 -0.62 10.16 22.38 0.23 -0.40 16 22 C 0.01 0.17 7.25 39.69 0.29 0.46 16 23 N -0.53 -9.57 11.27 -191.65 -2.16 -11.73 16 24 C 0.30 2.72 12.49 180.04 2.25 4.97 16 25 N -0.48 -5.30 3.20 -549.30 -1.76 -7.06 16 26 C 0.07 0.19 11.19 127.77 1.43 1.62 16 27 C 0.21 4.07 8.01 134.06 1.07 5.15 16 28 N -0.44 -9.52 6.02 -181.84 -1.10 -10.62 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.30 6.34 -2.39 -0.02 1.28 16 31 H 0.10 1.95 5.26 -2.97 -0.02 1.94 16 32 H 0.11 2.37 8.07 -2.39 -0.02 2.35 16 33 H 0.07 2.28 7.39 -2.39 -0.02 2.26 16 34 H 0.04 1.63 6.18 -2.39 -0.01 1.62 16 35 H 0.03 1.35 6.86 -2.39 -0.02 1.33 16 36 H 0.04 1.74 7.77 -2.39 -0.02 1.72 16 37 H 0.07 1.88 8.07 -2.38 -0.02 1.86 16 38 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 39 H 0.06 1.80 6.09 -2.39 -0.01 1.78 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.38 21.05 5.36 -92.71 -0.50 20.55 16 43 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.16 3.49 7.63 -2.91 -0.02 3.47 16 45 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 46 H 0.28 -0.92 8.06 -2.91 -0.02 -0.95 16 47 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 49 H 0.13 -0.54 8.14 -2.39 -0.02 -0.56 16 Total: -1.00 -81.21 388.20 4.39 -76.82 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.48 Total: 25.75 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 10.43 Total: 15.62 kcal Atomic # 7 Polarization: -139.34 SS G_CDS: -8.49 Total: -147.83 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -81.21 4.39 -76.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755286682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.959 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds