Wall clock time and date at job start Wed Apr 1 2020 04:41:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42897 * 109.47739 * 2 1
4 4 C 1.42898 * 114.00516 * 180.02562 * 3 2 1
5 5 C 1.53004 * 109.47117 * 179.97438 * 4 3 2
6 6 N 1.46503 * 109.46747 * 174.63983 * 5 4 3
7 7 C 1.37611 * 127.15479 * 84.14257 * 6 5 4
8 8 C 1.47780 * 126.47092 * 0.02562 * 7 6 5
9 9 C 1.39581 * 119.75185 * 180.02562 * 8 7 6
10 10 C 1.38313 * 119.05032 * 180.25203 * 9 8 7
11 11 C 1.38851 * 118.53499 * 359.53218 * 10 9 8
12 12 C 1.38260 * 119.40850 * 0.43246 * 11 10 9
13 13 N 1.31740 * 120.91611 * 359.80614 * 12 11 10
14 14 N 1.31285 * 107.05963 * 180.27912 * 7 6 5
15 15 N 1.28519 * 109.91333 * 359.55484 * 14 7 6
16 16 C 1.31489 * 110.06489 * 0.45557 * 15 14 7
17 17 N 1.38292 * 126.36177 * 179.70558 * 16 15 14
18 18 C 1.46904 * 110.99791 * 245.50050 * 17 16 15
19 19 C 1.46890 * 111.00092 * 9.45225 * 17 16 15
20 20 H 1.08998 * 109.47152 * 55.00307 * 19 17 16
21 21 C 1.53002 * 109.47450 * 294.99942 * 19 17 16
22 22 C 1.50706 * 109.47320 * 174.99946 * 19 17 16
23 23 H 1.07994 * 120.00087 * 115.55915 * 22 19 17
24 24 C 1.37879 * 119.99738 * 295.56374 * 22 19 17
25 25 N 1.31513 * 119.99723 * 177.32046 * 24 22 19
26 26 Si 1.86800 * 120.00074 * 357.31916 * 24 22 19
27 27 H 1.48497 * 109.47295 * 89.07023 * 26 24 22
28 28 H 1.48503 * 109.46870 * 209.06805 * 26 24 22
29 29 H 1.48494 * 109.47212 * 329.06348 * 26 24 22
30 30 H 1.09006 * 109.46749 * 299.99721 * 1 2 3
31 31 H 1.09001 * 109.47491 * 59.99352 * 1 2 3
32 32 H 1.09000 * 109.47112 * 180.02562 * 1 2 3
33 33 H 1.09006 * 109.46749 * 240.00279 * 2 1 3
34 34 H 1.09001 * 109.47491 * 120.00648 * 2 1 3
35 35 H 1.09003 * 109.47046 * 60.00482 * 4 3 2
36 36 H 1.08997 * 109.47279 * 300.00165 * 4 3 2
37 37 H 1.09000 * 109.46573 * 54.64163 * 5 4 3
38 38 H 1.08996 * 109.47241 * 294.64161 * 5 4 3
39 39 H 1.08004 * 120.47264 * 359.97438 * 9 8 7
40 40 H 1.07999 * 120.73467 * 179.74674 * 10 9 8
41 41 H 1.08004 * 120.29663 * 180.21856 * 11 10 9
42 42 H 1.07999 * 119.53981 * 179.79458 * 12 11 10
43 43 H 1.08993 * 109.47397 * 53.41006 * 18 17 16
44 44 H 1.08997 * 109.46957 * 173.41069 * 18 17 16
45 45 H 1.09003 * 109.47129 * 293.41063 * 18 17 16
46 46 H 1.09002 * 109.46881 * 187.00909 * 21 19 17
47 47 H 1.08989 * 109.47073 * 307.01638 * 21 19 17
48 48 H 1.09000 * 109.46990 * 67.01655 * 21 19 17
49 49 H 0.96997 * 119.99679 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4310 1.4600 -0.0006
5 6 3.8255 2.9383 -0.0012
6 7 5.2802 3.0554 0.1273
7 6 6.2122 2.9838 -0.8827
8 6 5.9364 2.7724 -2.3190
9 6 6.9950 2.7224 -3.2275
10 6 6.7200 2.5292 -4.5692
11 6 5.3959 2.3819 -4.9604
12 6 4.3958 2.4411 -4.0075
13 7 4.6830 2.6310 -2.7358
14 7 7.3929 3.1331 -0.3285
15 7 7.2634 3.3002 0.9392
16 6 5.9921 3.2579 1.2723
17 7 5.4737 3.3931 2.5472
18 6 4.8348 2.1468 2.9906
19 6 6.5118 3.8187 3.4953
20 1 6.9812 4.7335 3.1336
21 6 7.5682 2.7193 3.6225
22 6 5.8873 4.0736 4.8430
23 1 6.1594 3.4599 5.6890
24 6 4.9687 5.0903 4.9959
25 7 4.3845 5.2792 6.1589
26 14 4.5538 6.1994 3.5512
27 1 3.4302 5.6090 2.7805
28 1 4.1590 7.5399 4.0537
29 1 5.7426 6.3312 2.6710
30 1 -0.3633 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 1.8933 -0.5138 -0.8901
34 1 1.8934 -0.5139 0.8899
35 1 3.8333 0.9766 -0.8909
36 1 3.8341 0.9763 0.8891
37 1 3.3449 3.4429 0.8370
38 1 3.5049 3.3996 -0.9352
39 1 8.0138 2.8375 -2.8882
40 1 7.5178 2.4901 -5.2961
41 1 5.1490 2.2261 -6.0002
42 1 3.3650 2.3301 -4.3098
43 1 5.5379 1.3206 2.8851
44 1 4.5398 2.2415 4.0356
45 1 3.9528 1.9535 2.3801
46 1 8.2697 2.9794 4.4152
47 1 7.0817 1.7742 3.8634
48 1 8.1058 2.6211 2.6794
49 1 3.7385 5.9947 6.2666
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001768146976.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:19
Heat of formation + Delta-G solvation = 95.527478 kcal
Electronic energy + Delta-G solvation = -31667.117937 eV
Core-core repulsion = 27632.017769 eV
Total energy + Delta-G solvation = -4035.100168 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.63359 -40.15310 -38.27632 -37.52429 -35.15123 -32.88859 -32.58673 -32.14293
-31.66232 -29.87601 -28.94353 -28.80481 -25.66405 -25.41006 -24.14301 -23.72987
-23.32294 -22.95106 -21.48796 -20.57921 -19.35248 -17.63118 -17.15204 -16.83614
-16.49033 -16.33360 -16.15946 -15.87973 -15.68968 -15.27885 -14.55646 -14.46085
-14.25565 -14.13871 -14.00012 -13.70686 -13.36625 -13.27368 -12.66097 -12.63032
-12.40790 -12.32020 -12.10552 -12.06508 -11.65777 -11.42785 -11.27097 -11.16445
-10.96516 -10.81835 -10.66404 -10.44712 -10.26413 -10.03232 -9.87164 -9.81354
-9.69447 -9.66310 -9.61821 -9.22629 -8.77398 -8.63456 -7.49162 -6.17709
-4.24926 0.53035 1.01732 2.16601 2.38754 3.09147 3.41323 3.43101
3.53072 3.55745 3.73613 3.76776 4.39003 4.46951 4.51855 4.57846
4.76319 4.80103 4.84814 4.85717 4.89202 5.09608 5.13261 5.20060
5.22397 5.25326 5.41173 5.44516 5.48939 5.55261 5.64875 5.72037
5.79342 5.87551 5.90502 5.93301 5.95463 6.09505 6.23044 6.35246
6.37959 6.54783 6.56683 6.70424 6.79972 7.02076 7.08943 7.23565
7.48102 7.61963 7.64511 8.01608 8.42739 8.85299 9.05712 9.46253
10.91465
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.009481 B = 0.004389 C = 0.003446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2952.527339 B = 6378.069051 C = 8123.905309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.060 3.940
3 O -0.381 6.381
4 C 0.057 3.943
5 C 0.117 3.883
6 N -0.465 5.465
7 C 0.180 3.820
8 C 0.217 3.783
9 C -0.132 4.132
10 C -0.071 4.071
11 C -0.174 4.174
12 C 0.107 3.893
13 N -0.481 5.481
14 N -0.253 5.253
15 N -0.318 5.318
16 C 0.396 3.604
17 N -0.457 5.457
18 C 0.031 3.969
19 C 0.182 3.818
20 H 0.058 0.942
21 C -0.169 4.169
22 C -0.513 4.513
23 H 0.080 0.920
24 C 0.090 3.910
25 N -0.887 5.887
26 Si 0.900 3.100
27 H -0.275 1.275
28 H -0.301 1.301
29 H -0.269 1.269
30 H 0.065 0.935
31 H 0.062 0.938
32 H 0.070 0.930
33 H 0.046 0.954
34 H 0.049 0.951
35 H 0.057 0.943
36 H 0.054 0.946
37 H 0.104 0.896
38 H 0.115 0.885
39 H 0.149 0.851
40 H 0.140 0.860
41 H 0.136 0.864
42 H 0.159 0.841
43 H 0.030 0.970
44 H 0.107 0.893
45 H 0.053 0.947
46 H 0.055 0.945
47 H 0.039 0.961
48 H 0.066 0.934
49 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.893 -10.395 -21.450 24.152
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.017 4.017
3 O -0.300 6.300
4 C -0.021 4.021
5 C -0.007 4.007
6 N -0.161 5.161
7 C -0.084 4.084
8 C 0.079 3.921
9 C -0.154 4.154
10 C -0.097 4.097
11 C -0.195 4.195
12 C -0.051 4.051
13 N -0.192 5.192
14 N -0.097 5.097
15 N -0.165 5.165
16 C 0.042 3.958
17 N -0.182 5.182
18 C -0.115 4.115
19 C 0.080 3.920
20 H 0.076 0.924
21 C -0.228 4.228
22 C -0.551 4.551
23 H 0.098 0.902
24 C -0.116 4.116
25 N -0.523 5.523
26 Si 0.729 3.271
27 H -0.200 1.200
28 H -0.229 1.229
29 H -0.194 1.194
30 H 0.084 0.916
31 H 0.081 0.919
32 H 0.089 0.911
33 H 0.064 0.936
34 H 0.067 0.933
35 H 0.075 0.925
36 H 0.072 0.928
37 H 0.123 0.877
38 H 0.133 0.867
39 H 0.167 0.833
40 H 0.158 0.842
41 H 0.154 0.846
42 H 0.176 0.824
43 H 0.048 0.952
44 H 0.126 0.874
45 H 0.072 0.928
46 H 0.074 0.926
47 H 0.058 0.942
48 H 0.085 0.915
49 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -3.736 -9.608 -20.500 22.946
hybrid contribution -0.528 -0.197 -1.390 1.499
sum -4.264 -9.806 -21.890 24.362
Atomic orbital electron populations
1.21736 0.93524 1.02176 1.03311 1.22455 0.95641 0.83514 1.00072
1.87817 1.19966 1.26697 1.95489 1.22702 0.81948 0.96446 1.00961
1.21608 0.75779 0.96869 1.06397 1.46087 1.08184 1.55531 1.06264
1.21893 0.86093 1.11444 0.89002 1.18130 0.89280 0.96428 0.88270
1.22026 1.00819 0.99613 0.92916 1.21558 0.97074 0.95502 0.95595
1.22216 0.93792 1.02180 1.01304 1.22668 1.00050 0.94993 0.87437
1.67616 1.20448 1.12592 1.18572 1.74222 1.18818 1.14693 1.01930
1.74868 1.12620 1.24551 1.04445 1.23553 0.86986 0.96896 0.88355
1.59918 1.32660 1.29411 0.96253 1.22447 0.96922 0.87758 1.04370
1.19961 0.86907 0.94938 0.90157 0.92425 1.22399 0.99816 0.98702
1.01881 1.20946 1.25028 1.16813 0.92322 0.90182 1.25021 0.94421
0.96687 0.95512 1.69929 1.26897 1.31627 1.23844 0.86428 0.79563
0.78466 0.82654 1.20024 1.22890 1.19395 0.91583 0.91861 0.91134
0.93572 0.93286 0.92458 0.92789 0.87737 0.86726 0.83349 0.84246
0.84588 0.82358 0.95188 0.87403 0.92823 0.92604 0.94173 0.91531
0.92393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16
2 C 0.06 0.63 6.66 37.16 0.25 0.88 16
3 O -0.38 -5.19 10.34 -35.23 -0.36 -5.56 16
4 C 0.06 0.80 5.81 37.16 0.22 1.02 16
5 C 0.12 1.88 5.00 -4.04 -0.02 1.85 16
6 N -0.46 -8.54 2.83 -114.73 -0.32 -8.86 16
7 C 0.18 3.17 7.82 -153.74 -1.20 1.97 16
8 C 0.22 3.08 6.75 -83.03 -0.56 2.52 16
9 C -0.13 -1.52 9.74 -39.05 -0.38 -1.90 16
10 C -0.07 -0.59 10.16 -39.33 -0.40 -0.99 16
11 C -0.17 -1.31 10.11 -39.35 -0.40 -1.71 16
12 C 0.11 0.99 11.17 -17.58 -0.20 0.79 16
13 N -0.48 -6.14 7.40 -9.85 -0.07 -6.22 16
14 N -0.25 -4.99 11.86 32.59 0.39 -4.60 16
15 N -0.32 -6.89 9.07 30.28 0.27 -6.62 16
16 C 0.40 8.34 6.68 -319.10 -2.13 6.21 16
17 N -0.46 -10.10 2.86 -176.14 -0.50 -10.60 16
18 C 0.03 0.61 8.31 60.07 0.50 1.11 16
19 C 0.18 4.37 1.41 -68.87 -0.10 4.27 16
20 H 0.06 1.50 6.73 -51.93 -0.35 1.15 16
21 C -0.17 -3.62 8.54 37.16 0.32 -3.30 16
22 C -0.51 -13.79 7.66 -34.44 -0.26 -14.05 16
23 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16
24 C 0.09 2.50 5.47 -17.82 -0.10 2.41 16
25 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16
26 Si 0.90 22.93 26.37 -169.99 -4.48 18.45 16
27 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16
28 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16
29 H -0.27 -6.99 6.41 56.52 0.36 -6.63 16
30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
35 H 0.06 0.79 7.59 -51.93 -0.39 0.39 16
36 H 0.05 0.79 6.12 -51.93 -0.32 0.47 16
37 H 0.10 1.83 7.77 -51.93 -0.40 1.43 16
38 H 0.11 1.75 6.63 -51.93 -0.34 1.41 16
39 H 0.15 1.67 7.86 -52.48 -0.41 1.26 16
40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16
41 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16
42 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16
43 H 0.03 0.55 6.70 -51.93 -0.35 0.20 16
44 H 0.11 2.28 6.79 -51.93 -0.35 1.93 16
45 H 0.05 0.94 4.61 -51.93 -0.24 0.70 16
46 H 0.05 1.16 8.13 -51.93 -0.42 0.74 16
47 H 0.04 0.81 6.26 -51.94 -0.33 0.49 16
48 H 0.07 1.42 5.72 -51.93 -0.30 1.12 16
49 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16
LS Contribution 388.97 15.07 5.86 5.86
Total: -1.00 -32.17 388.97 -9.72 -41.88
By element:
Atomic # 1 Polarization: 8.61 SS G_CDS: -7.18 Total: 1.43 kcal
Atomic # 6 Polarization: 4.23 SS G_CDS: -4.08 Total: 0.15 kcal
Atomic # 7 Polarization: -62.75 SS G_CDS: 0.53 Total: -62.22 kcal
Atomic # 8 Polarization: -5.19 SS G_CDS: -0.36 Total: -5.56 kcal
Atomic # 14 Polarization: 22.93 SS G_CDS: -4.48 Total: 18.45 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -32.17 -9.72 -41.88 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001768146976.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.412 kcal
(2) G-P(sol) polarization free energy of solvation -32.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal
(6) G-S(sol) free energy of system = (1) + (5) 95.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds