Wall clock time and date at job start Wed Apr 1 2020 04:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42897 * 109.47739 * 2 1
4 4 C 1.42898 * 114.00516 * 180.02562 * 3 2 1
5 5 C 1.53004 * 109.47117 * 179.97438 * 4 3 2
6 6 N 1.46503 * 109.46747 * 174.63983 * 5 4 3
7 7 C 1.37611 * 127.15479 * 84.14257 * 6 5 4
8 8 C 1.47780 * 126.47092 * 0.02562 * 7 6 5
9 9 C 1.39581 * 119.75185 * 180.02562 * 8 7 6
10 10 C 1.38313 * 119.05032 * 180.25203 * 9 8 7
11 11 C 1.38851 * 118.53499 * 359.53218 * 10 9 8
12 12 C 1.38260 * 119.40850 * 0.43246 * 11 10 9
13 13 N 1.31740 * 120.91611 * 359.80614 * 12 11 10
14 14 N 1.31285 * 107.05963 * 180.27912 * 7 6 5
15 15 N 1.28519 * 109.91333 * 359.55484 * 14 7 6
16 16 C 1.31489 * 110.06489 * 0.45557 * 15 14 7
17 17 N 1.38292 * 126.36177 * 179.70558 * 16 15 14
18 18 C 1.46904 * 110.99791 * 245.50050 * 17 16 15
19 19 C 1.46890 * 111.00092 * 9.45225 * 17 16 15
20 20 H 1.08998 * 109.47152 * 55.00307 * 19 17 16
21 21 C 1.53002 * 109.47450 * 294.99942 * 19 17 16
22 22 C 1.50706 * 109.47320 * 174.99946 * 19 17 16
23 23 H 1.07994 * 120.00087 * 115.55915 * 22 19 17
24 24 C 1.37879 * 119.99738 * 295.56374 * 22 19 17
25 25 N 1.31513 * 119.99723 * 177.32046 * 24 22 19
26 26 Si 1.86800 * 120.00074 * 357.31916 * 24 22 19
27 27 H 1.48497 * 109.47295 * 89.07023 * 26 24 22
28 28 H 1.48503 * 109.46870 * 209.06805 * 26 24 22
29 29 H 1.48494 * 109.47212 * 329.06348 * 26 24 22
30 30 H 1.09006 * 109.46749 * 299.99721 * 1 2 3
31 31 H 1.09001 * 109.47491 * 59.99352 * 1 2 3
32 32 H 1.09000 * 109.47112 * 180.02562 * 1 2 3
33 33 H 1.09006 * 109.46749 * 240.00279 * 2 1 3
34 34 H 1.09001 * 109.47491 * 120.00648 * 2 1 3
35 35 H 1.09003 * 109.47046 * 60.00482 * 4 3 2
36 36 H 1.08997 * 109.47279 * 300.00165 * 4 3 2
37 37 H 1.09000 * 109.46573 * 54.64163 * 5 4 3
38 38 H 1.08996 * 109.47241 * 294.64161 * 5 4 3
39 39 H 1.08004 * 120.47264 * 359.97438 * 9 8 7
40 40 H 1.07999 * 120.73467 * 179.74674 * 10 9 8
41 41 H 1.08004 * 120.29663 * 180.21856 * 11 10 9
42 42 H 1.07999 * 119.53981 * 179.79458 * 12 11 10
43 43 H 1.08993 * 109.47397 * 53.41006 * 18 17 16
44 44 H 1.08997 * 109.46957 * 173.41069 * 18 17 16
45 45 H 1.09003 * 109.47129 * 293.41063 * 18 17 16
46 46 H 1.09002 * 109.46881 * 187.00909 * 21 19 17
47 47 H 1.08989 * 109.47073 * 307.01638 * 21 19 17
48 48 H 1.09000 * 109.46990 * 67.01655 * 21 19 17
49 49 H 0.96997 * 119.99679 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4310 1.4600 -0.0006
5 6 3.8255 2.9383 -0.0012
6 7 5.2802 3.0554 0.1273
7 6 6.2122 2.9838 -0.8827
8 6 5.9364 2.7724 -2.3190
9 6 6.9950 2.7224 -3.2275
10 6 6.7200 2.5292 -4.5692
11 6 5.3959 2.3819 -4.9604
12 6 4.3958 2.4411 -4.0075
13 7 4.6830 2.6310 -2.7358
14 7 7.3929 3.1331 -0.3285
15 7 7.2634 3.3002 0.9392
16 6 5.9921 3.2579 1.2723
17 7 5.4737 3.3931 2.5472
18 6 4.8348 2.1468 2.9906
19 6 6.5118 3.8187 3.4953
20 1 6.9812 4.7335 3.1336
21 6 7.5682 2.7193 3.6225
22 6 5.8873 4.0736 4.8430
23 1 6.1594 3.4599 5.6890
24 6 4.9687 5.0903 4.9959
25 7 4.3845 5.2792 6.1589
26 14 4.5538 6.1994 3.5512
27 1 3.4302 5.6090 2.7805
28 1 4.1590 7.5399 4.0537
29 1 5.7426 6.3312 2.6710
30 1 -0.3633 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 1.8933 -0.5138 -0.8901
34 1 1.8934 -0.5139 0.8899
35 1 3.8333 0.9766 -0.8909
36 1 3.8341 0.9763 0.8891
37 1 3.3449 3.4429 0.8370
38 1 3.5049 3.3996 -0.9352
39 1 8.0138 2.8375 -2.8882
40 1 7.5178 2.4901 -5.2961
41 1 5.1490 2.2261 -6.0002
42 1 3.3650 2.3301 -4.3098
43 1 5.5379 1.3206 2.8851
44 1 4.5398 2.2415 4.0356
45 1 3.9528 1.9535 2.3801
46 1 8.2697 2.9794 4.4152
47 1 7.0817 1.7742 3.8634
48 1 8.1058 2.6211 2.6794
49 1 3.7385 5.9947 6.2666
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001768146976.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:18
Heat of formation + Delta-G solvation = 77.896966 kcal
Electronic energy + Delta-G solvation = -31667.882454 eV
Core-core repulsion = 27632.017769 eV
Total energy + Delta-G solvation = -4035.864684 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-44.09324 -40.97426 -39.38790 -39.17589 -36.48469 -34.70313 -33.54799 -33.25221
-32.60888 -31.60613 -30.26382 -30.02083 -27.53381 -27.04010 -25.30905 -24.75485
-24.31343 -23.75049 -23.00994 -21.88750 -21.06250 -18.97254 -18.80775 -18.10929
-17.53076 -17.42200 -17.30894 -17.12428 -16.85863 -16.52296 -16.28230 -15.65235
-15.57635 -15.28034 -15.15334 -14.94969 -14.89088 -14.54326 -14.05138 -13.98540
-13.51688 -13.44724 -13.40460 -13.20021 -12.93127 -12.81669 -12.78649 -12.61042
-12.48601 -12.25879 -12.17298 -12.05351 -11.80698 -11.48741 -11.43834 -11.28583
-11.08617 -10.87413 -10.82920 -10.68874 -10.53852 -10.00990 -9.04266 -8.36288
-6.45067 -0.39995 0.30068 0.86475 1.00746 1.34252 1.35724 1.48522
1.69205 2.33791 2.45921 2.60405 2.86542 2.91856 3.23409 3.46738
3.59616 3.74389 3.86756 3.94271 4.06218 4.08688 4.10111 4.12259
4.20902 4.30113 4.30629 4.35378 4.36469 4.43768 4.47447 4.58179
4.63591 4.72152 4.82704 4.83599 4.86828 4.91401 4.99715 5.00973
5.14612 5.20749 5.24858 5.25257 5.30117 5.48734 5.59780 5.69522
5.80021 6.05483 6.19051 6.39619 6.67407 6.82932 7.28602 7.56648
8.76516
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.009481 B = 0.004389 C = 0.003446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2952.527339 B = 6378.069051 C = 8123.905309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.051 3.949
3 O -0.396 6.396
4 C 0.073 3.927
5 C 0.119 3.881
6 N -0.464 5.464
7 C 0.205 3.795
8 C 0.173 3.827
9 C -0.135 4.135
10 C -0.066 4.066
11 C -0.147 4.147
12 C 0.098 3.902
13 N -0.499 5.499
14 N -0.284 5.284
15 N -0.342 5.342
16 C 0.375 3.625
17 N -0.468 5.468
18 C 0.040 3.960
19 C 0.193 3.807
20 H 0.034 0.966
21 C -0.157 4.157
22 C -0.507 4.507
23 H 0.055 0.945
24 C 0.053 3.947
25 N -0.926 5.926
26 Si 0.949 3.051
27 H -0.267 1.267
28 H -0.299 1.299
29 H -0.280 1.280
30 H 0.054 0.946
31 H 0.065 0.935
32 H 0.094 0.906
33 H 0.061 0.939
34 H 0.050 0.950
35 H 0.064 0.936
36 H 0.046 0.954
37 H 0.086 0.914
38 H 0.124 0.876
39 H 0.142 0.858
40 H 0.175 0.825
41 H 0.179 0.821
42 H 0.188 0.812
43 H 0.039 0.961
44 H 0.087 0.913
45 H 0.073 0.927
46 H 0.055 0.945
47 H 0.048 0.952
48 H 0.069 0.931
49 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.946 -11.792 -26.019 28.991
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.025 4.025
3 O -0.315 6.315
4 C -0.005 4.005
5 C -0.004 4.004
6 N -0.159 5.159
7 C -0.060 4.060
8 C 0.037 3.963
9 C -0.157 4.157
10 C -0.092 4.092
11 C -0.167 4.167
12 C -0.061 4.061
13 N -0.210 5.210
14 N -0.125 5.125
15 N -0.188 5.188
16 C 0.019 3.981
17 N -0.193 5.193
18 C -0.107 4.107
19 C 0.089 3.911
20 H 0.052 0.948
21 C -0.216 4.216
22 C -0.546 4.546
23 H 0.073 0.927
24 C -0.149 4.149
25 N -0.564 5.564
26 Si 0.777 3.223
27 H -0.193 1.193
28 H -0.226 1.226
29 H -0.205 1.205
30 H 0.074 0.926
31 H 0.084 0.916
32 H 0.112 0.888
33 H 0.079 0.921
34 H 0.068 0.932
35 H 0.082 0.918
36 H 0.064 0.936
37 H 0.105 0.895
38 H 0.142 0.858
39 H 0.160 0.840
40 H 0.193 0.807
41 H 0.196 0.804
42 H 0.205 0.795
43 H 0.058 0.942
44 H 0.106 0.894
45 H 0.091 0.909
46 H 0.074 0.926
47 H 0.067 0.933
48 H 0.088 0.912
49 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -4.784 -11.019 -25.075 27.804
hybrid contribution -0.226 0.113 -0.291 0.385
sum -5.010 -10.906 -25.367 28.063
Atomic orbital electron populations
1.21756 0.92149 1.03609 1.02883 1.22722 0.96760 0.82152 1.00873
1.87806 1.19297 1.28809 1.95580 1.22445 0.82537 0.94722 1.00820
1.21681 0.74413 0.98347 1.05946 1.46166 1.09029 1.55082 1.05610
1.22669 0.85155 1.07743 0.90438 1.18035 0.90904 1.00709 0.86657
1.22126 0.99911 0.99461 0.94192 1.21991 0.98736 0.93940 0.94527
1.22723 0.92758 0.98284 1.02948 1.23285 1.02073 0.94245 0.86490
1.67507 1.19794 1.13035 1.20709 1.74150 1.19945 1.17194 1.01237
1.74732 1.13293 1.25052 1.05765 1.23244 0.87337 0.99118 0.88414
1.59510 1.32103 1.30933 0.96709 1.22411 0.97717 0.87217 1.03314
1.19622 0.87512 0.95008 0.88940 0.94783 1.22264 0.99145 0.98192
1.02020 1.21015 1.24439 1.16041 0.93108 0.92730 1.25508 0.94631
0.97810 0.96959 1.70004 1.28295 1.32782 1.25332 0.85663 0.78982
0.77302 0.80325 1.19276 1.22611 1.20536 0.92645 0.91634 0.88779
0.92081 0.93154 0.91790 0.93581 0.89531 0.85841 0.83999 0.80729
0.80354 0.79523 0.94219 0.89421 0.90901 0.92594 0.93341 0.91234
0.92176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16
2 C 0.05 0.97 6.66 71.98 0.48 1.45 16
3 O -0.40 -10.23 10.34 -148.98 -1.54 -11.77 16
4 C 0.07 1.96 5.81 71.98 0.42 2.38 16
5 C 0.12 3.76 5.00 86.38 0.43 4.19 16
6 N -0.46 -17.05 2.83 -516.88 -1.46 -18.51 16
7 C 0.21 7.23 7.82 136.17 1.07 8.29 16
8 C 0.17 4.68 6.75 41.84 0.28 4.96 16
9 C -0.13 -2.81 9.74 22.61 0.22 -2.59 16
10 C -0.07 -0.80 10.16 22.43 0.23 -0.58 16
11 C -0.15 -1.40 10.11 22.42 0.23 -1.17 16
12 C 0.10 1.39 11.17 84.71 0.95 2.34 16
13 N -0.50 -11.51 7.40 -185.07 -1.37 -12.88 16
14 N -0.28 -11.35 11.86 -50.81 -0.60 -11.95 16
15 N -0.34 -15.18 9.07 -58.11 -0.53 -15.71 16
16 C 0.37 16.02 6.68 260.19 1.74 17.76 16
17 N -0.47 -21.08 2.86 -711.18 -2.04 -23.11 16
18 C 0.04 1.56 8.31 127.69 1.06 2.62 16
19 C 0.19 9.51 1.41 44.17 0.06 9.58 16
20 H 0.03 1.84 6.73 -2.39 -0.02 1.83 16
21 C -0.16 -6.89 8.54 71.98 0.61 -6.28 16
22 C -0.51 -28.27 7.66 25.60 0.20 -28.08 16
23 H 0.05 3.27 7.99 -2.91 -0.02 3.25 16
24 C 0.05 3.04 5.47 84.66 0.46 3.51 16
25 N -0.93 -55.98 13.96 21.45 0.30 -55.68 16
26 Si 0.95 48.56 26.37 68.60 1.81 50.37 16
27 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16
28 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16
29 H -0.28 -14.73 6.41 99.48 0.64 -14.09 16
30 H 0.05 0.96 8.14 -2.38 -0.02 0.95 16
31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16
34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
35 H 0.06 1.65 7.59 -2.39 -0.02 1.63 16
36 H 0.05 1.31 6.12 -2.39 -0.01 1.30 16
37 H 0.09 3.05 7.77 -2.39 -0.02 3.03 16
38 H 0.12 3.66 6.63 -2.39 -0.02 3.65 16
39 H 0.14 3.06 7.86 -2.91 -0.02 3.04 16
40 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16
41 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16
42 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16
43 H 0.04 1.46 6.70 -2.39 -0.02 1.45 16
44 H 0.09 3.82 6.79 -2.39 -0.02 3.80 16
45 H 0.07 2.56 4.61 -2.39 -0.01 2.55 16
46 H 0.05 2.39 8.13 -2.39 -0.02 2.37 16
47 H 0.05 2.00 6.26 -2.39 -0.01 1.98 16
48 H 0.07 3.02 5.72 -2.39 -0.01 3.01 16
49 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16
Total: -1.00 -73.11 388.97 4.64 -68.47
By element:
Atomic # 1 Polarization: 12.99 SS G_CDS: 0.89 Total: 13.88 kcal
Atomic # 6 Polarization: 7.71 SS G_CDS: 9.17 Total: 16.88 kcal
Atomic # 7 Polarization: -132.15 SS G_CDS: -5.70 Total: -137.85 kcal
Atomic # 8 Polarization: -10.23 SS G_CDS: -1.54 Total: -11.77 kcal
Atomic # 14 Polarization: 48.56 SS G_CDS: 1.81 Total: 50.37 kcal
Total: -73.11 4.64 -68.47 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001768146976.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.370 kcal
(2) G-P(sol) polarization free energy of solvation -73.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds