Wall clock time and date at job start Wed Apr 1 2020 04:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47222 * 2 1 4 4 C 1.42895 * 113.99755 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47058 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46887 * 175.97849 * 5 4 3 7 7 C 1.37622 * 127.15645 * 85.16092 * 6 5 4 8 8 C 1.47773 * 126.46721 * 359.97438 * 7 6 5 9 9 C 1.39583 * 119.74619 * 180.02562 * 8 7 6 10 10 C 1.38321 * 119.04652 * 180.25194 * 9 8 7 11 11 C 1.38848 * 118.53468 * 359.52900 * 10 9 8 12 12 C 1.38251 * 119.41119 * 0.42787 * 11 10 9 13 13 N 1.31744 * 120.92013 * 359.81718 * 12 11 10 14 14 N 1.31282 * 107.05689 * 180.25591 * 7 6 5 15 15 N 1.28518 * 109.91699 * 359.56061 * 14 7 6 16 16 C 1.31490 * 110.06532 * 0.44978 * 15 14 7 17 17 N 1.38283 * 126.36623 * 179.73019 * 16 15 14 18 18 C 1.46904 * 110.99846 * 296.06200 * 17 16 15 19 19 C 1.46904 * 110.99890 * 60.01335 * 17 16 15 20 20 H 1.09007 * 109.46908 * 299.99920 * 19 17 16 21 21 C 1.52998 * 109.47236 * 60.00208 * 19 17 16 22 22 C 1.50699 * 109.47025 * 180.02562 * 19 17 16 23 23 H 1.08002 * 120.00143 * 359.97438 * 22 19 17 24 24 C 1.37879 * 120.00209 * 179.97438 * 22 19 17 25 25 N 1.31514 * 119.99607 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 120.00276 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.47257 * 90.00083 * 26 24 22 28 28 H 1.48501 * 109.46848 * 209.99953 * 26 24 22 29 29 H 1.48504 * 109.47045 * 329.99773 * 26 24 22 30 30 H 1.09002 * 109.47105 * 60.00068 * 1 2 3 31 31 H 1.08997 * 109.47620 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47486 * 300.01042 * 1 2 3 33 33 H 1.08997 * 109.47080 * 239.99557 * 2 1 3 34 34 H 1.09003 * 109.46390 * 119.99717 * 2 1 3 35 35 H 1.09003 * 109.47532 * 59.99929 * 4 3 2 36 36 H 1.09001 * 109.47207 * 299.99682 * 4 3 2 37 37 H 1.09000 * 109.47017 * 55.98171 * 5 4 3 38 38 H 1.09002 * 109.47197 * 295.97656 * 5 4 3 39 39 H 1.07996 * 120.47952 * 359.97438 * 9 8 7 40 40 H 1.08008 * 120.73052 * 179.71889 * 10 9 8 41 41 H 1.07997 * 120.29394 * 180.20041 * 11 10 9 42 42 H 1.07998 * 119.54536 * 179.79242 * 12 11 10 43 43 H 1.09001 * 109.47061 * 65.64065 * 18 17 16 44 44 H 1.09004 * 109.46863 * 185.63951 * 18 17 16 45 45 H 1.09000 * 109.47054 * 305.63612 * 18 17 16 46 46 H 1.08998 * 109.46830 * 59.99815 * 21 19 17 47 47 H 1.08995 * 109.47158 * 180.02562 * 21 19 17 48 48 H 1.09003 * 109.46904 * 299.99673 * 21 19 17 49 49 H 0.96998 * 120.00161 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 7 5.2826 3.0548 0.0973 7 6 6.1911 3.0082 -0.9353 8 6 5.8824 2.8290 -2.3693 9 6 6.9197 2.8021 -3.3029 10 6 6.6140 2.6389 -4.6420 11 6 5.2815 2.4975 -5.0056 12 6 4.3038 2.5324 -4.0288 13 7 4.6199 2.6942 -2.7601 14 7 7.3841 3.1470 -0.4052 15 7 7.2838 3.2845 0.8687 16 6 6.0206 3.2320 1.2300 17 7 5.5315 3.3371 2.5192 18 6 5.9961 2.2191 3.3512 19 6 5.8990 4.6272 3.1181 20 1 6.9849 4.7179 3.1478 21 6 5.3149 5.7645 2.2777 22 6 5.3505 4.7048 4.5196 23 1 4.7851 3.8786 4.9248 24 6 5.5704 5.8306 5.2847 25 7 6.2593 6.8364 4.7915 26 14 4.8912 5.9265 7.0222 27 1 5.8929 5.3858 7.9759 28 1 4.5983 7.3422 7.3616 29 1 3.6423 5.1277 7.1102 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.8341 0.9763 -0.8892 36 1 3.8332 0.9766 0.8908 37 1 3.3633 3.4381 0.8512 38 1 3.4847 3.4049 -0.9244 39 1 7.9460 2.9118 -2.9848 40 1 7.3949 2.6186 -5.3879 41 1 5.0109 2.3651 -6.0427 42 1 3.2664 2.4261 -4.3096 43 1 7.0777 2.2808 3.4717 44 1 5.5180 2.2711 4.3295 45 1 5.7372 1.2760 2.8700 46 1 4.2291 5.6737 2.2481 47 1 5.5879 6.7217 2.7218 48 1 5.7121 5.7082 1.2641 49 1 6.4138 7.6286 5.3296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001768146977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:23 Heat of formation + Delta-G solvation = 87.970383 kcal Electronic energy + Delta-G solvation = -31122.052670 eV Core-core repulsion = 27086.624802 eV Total energy + Delta-G solvation = -4035.427868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.57318 -40.12374 -38.17958 -37.07860 -35.01140 -33.06788 -32.66576 -32.17372 -31.59878 -29.45776 -28.82040 -28.72172 -25.70160 -24.53090 -24.22249 -23.64591 -23.27515 -22.91875 -21.66779 -20.74077 -19.44064 -17.52508 -17.04733 -16.53351 -16.45258 -16.24906 -16.02291 -15.92643 -15.54301 -15.03472 -14.68017 -14.37458 -14.26883 -14.07646 -13.92012 -13.53845 -13.35162 -13.16505 -12.61898 -12.39255 -12.33093 -12.17212 -12.03293 -11.83956 -11.35600 -11.24475 -11.18367 -11.14614 -10.96199 -10.81183 -10.40570 -10.33966 -10.23007 -10.18174 -10.10698 -9.95225 -9.72756 -9.66169 -9.59158 -9.10052 -8.53221 -8.23283 -7.76952 -6.07799 -4.14478 0.54841 1.04518 2.18294 2.44015 3.11370 3.28409 3.35136 3.38177 3.57356 3.76746 3.79548 4.33516 4.49115 4.60590 4.64432 4.81121 4.85007 4.88433 4.92055 4.97531 5.14474 5.16956 5.23999 5.24780 5.35161 5.45198 5.51573 5.55023 5.59500 5.72925 5.76989 5.87199 5.91405 5.93651 5.97688 6.10959 6.28402 6.40282 6.42074 6.57352 6.72690 6.81021 6.94045 7.04554 7.11826 7.34699 7.61755 7.66189 7.72401 7.89491 8.16296 8.41447 8.88592 9.03771 9.50393 10.99203 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003560 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.426757 B = 7864.319863 C = 9817.990108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.381 6.381 4 C 0.065 3.935 5 C 0.121 3.879 6 N -0.447 5.447 7 C 0.188 3.812 8 C 0.214 3.786 9 C -0.130 4.130 10 C -0.072 4.072 11 C -0.173 4.173 12 C 0.106 3.894 13 N -0.479 5.479 14 N -0.258 5.258 15 N -0.312 5.312 16 C 0.399 3.601 17 N -0.474 5.474 18 C 0.051 3.949 19 C 0.225 3.775 20 H 0.023 0.977 21 C -0.132 4.132 22 C -0.512 4.512 23 H 0.067 0.933 24 C 0.063 3.937 25 N -0.888 5.888 26 Si 0.901 3.099 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.037 0.963 44 H 0.092 0.908 45 H 0.042 0.958 46 H 0.034 0.966 47 H 0.093 0.907 48 H 0.001 0.999 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 -12.507 -18.099 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.299 6.299 4 C -0.013 4.013 5 C -0.003 4.003 6 N -0.139 5.139 7 C -0.076 4.076 8 C 0.076 3.924 9 C -0.152 4.152 10 C -0.098 4.098 11 C -0.193 4.193 12 C -0.052 4.052 13 N -0.189 5.189 14 N -0.103 5.103 15 N -0.158 5.158 16 C 0.044 3.956 17 N -0.201 5.201 18 C -0.096 4.096 19 C 0.121 3.879 20 H 0.041 0.959 21 C -0.190 4.190 22 C -0.550 4.550 23 H 0.085 0.915 24 C -0.139 4.139 25 N -0.526 5.526 26 Si 0.729 3.271 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.177 0.823 43 H 0.056 0.944 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.111 0.889 48 H 0.020 0.980 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.509 -12.035 -17.264 22.028 hybrid contribution -0.164 -0.129 0.191 0.283 sum -6.673 -12.164 -17.072 21.999 Atomic orbital electron populations 1.21734 0.93604 1.02095 1.03302 1.22435 0.95570 0.83657 0.99979 1.87812 1.20112 1.26507 1.95467 1.22521 0.81730 0.96517 1.00509 1.21575 0.75450 0.96760 1.06488 1.46206 1.08456 1.52956 1.06309 1.21995 0.86607 1.10402 0.88624 1.18126 0.89311 0.96744 0.88203 1.22040 1.01022 0.99398 0.92729 1.21564 0.96890 0.95554 0.95775 1.22224 0.93861 1.01986 1.01250 1.22676 1.00176 0.95055 0.87276 1.67623 1.19371 1.12400 1.19535 1.74261 1.18147 1.15549 1.02307 1.74840 1.15488 1.21222 1.04232 1.22860 0.85681 0.97900 0.89184 1.59219 1.57945 1.07757 0.95218 1.22210 0.99380 0.90078 0.97929 1.19464 0.95602 0.79950 0.92877 0.95918 1.21827 0.98775 1.03019 0.95381 1.21037 1.34833 1.02603 0.96539 0.91474 1.24912 0.95028 0.95412 0.98572 1.69898 1.39541 1.06239 1.36908 0.86447 0.79317 0.77293 0.84070 1.20614 1.21199 1.19759 0.91850 0.91227 0.91612 0.93652 0.93388 0.92888 0.93133 0.87200 0.86972 0.83315 0.84214 0.84558 0.82293 0.94396 0.88986 0.93918 0.94726 0.88856 0.98026 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.63 6.66 37.16 0.25 0.88 16 3 O -0.38 -5.19 10.34 -35.23 -0.36 -5.55 16 4 C 0.07 0.92 6.26 37.16 0.23 1.16 16 5 C 0.12 1.93 5.85 -4.04 -0.02 1.91 16 6 N -0.45 -8.26 2.83 -114.73 -0.32 -8.59 16 7 C 0.19 3.38 7.82 -153.73 -1.20 2.17 16 8 C 0.21 3.09 6.75 -83.03 -0.56 2.53 16 9 C -0.13 -1.53 9.74 -39.05 -0.38 -1.91 16 10 C -0.07 -0.61 10.16 -39.32 -0.40 -1.01 16 11 C -0.17 -1.31 10.11 -39.35 -0.40 -1.71 16 12 C 0.11 0.99 11.17 -17.58 -0.20 0.80 16 13 N -0.48 -6.16 7.57 -9.85 -0.07 -6.23 16 14 N -0.26 -5.25 11.86 32.59 0.39 -4.86 16 15 N -0.31 -7.06 12.13 30.28 0.37 -6.69 16 16 C 0.40 8.50 5.00 -319.11 -1.60 6.90 16 17 N -0.47 -10.47 4.61 -176.13 -0.81 -11.28 16 18 C 0.05 1.02 9.14 60.07 0.55 1.57 16 19 C 0.23 5.76 1.99 -68.86 -0.14 5.63 16 20 H 0.02 0.67 8.09 -51.93 -0.42 0.25 16 21 C -0.13 -3.35 8.84 37.16 0.33 -3.02 16 22 C -0.51 -13.61 7.95 -34.44 -0.27 -13.88 16 23 H 0.07 1.73 6.40 -52.49 -0.34 1.40 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 25 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 26 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.73 7.75 -51.93 -0.40 0.33 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 1.91 8.11 -51.93 -0.42 1.49 16 38 H 0.11 1.72 6.57 -51.93 -0.34 1.38 16 39 H 0.15 1.72 7.86 -52.49 -0.41 1.31 16 40 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.80 6.30 -51.93 -0.33 1.48 16 45 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 46 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 48 H 0.00 0.02 7.22 -51.93 -0.38 -0.36 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -31.70 404.65 -10.20 -41.90 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.56 Total: 1.17 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -3.52 Total: 2.72 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.17 Total: -62.17 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.36 Total: -5.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.70 -10.20 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001768146977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.867 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds