Wall clock time and date at job start Wed Apr 1 2020 04:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47222 * 2 1 4 4 C 1.42895 * 113.99755 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47058 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46887 * 175.97849 * 5 4 3 7 7 C 1.37622 * 127.15645 * 85.16092 * 6 5 4 8 8 C 1.47773 * 126.46721 * 359.97438 * 7 6 5 9 9 C 1.39583 * 119.74619 * 180.02562 * 8 7 6 10 10 C 1.38321 * 119.04652 * 180.25194 * 9 8 7 11 11 C 1.38848 * 118.53468 * 359.52900 * 10 9 8 12 12 C 1.38251 * 119.41119 * 0.42787 * 11 10 9 13 13 N 1.31744 * 120.92013 * 359.81718 * 12 11 10 14 14 N 1.31282 * 107.05689 * 180.25591 * 7 6 5 15 15 N 1.28518 * 109.91699 * 359.56061 * 14 7 6 16 16 C 1.31490 * 110.06532 * 0.44978 * 15 14 7 17 17 N 1.38283 * 126.36623 * 179.73019 * 16 15 14 18 18 C 1.46904 * 110.99846 * 296.06200 * 17 16 15 19 19 C 1.46904 * 110.99890 * 60.01335 * 17 16 15 20 20 H 1.09007 * 109.46908 * 299.99920 * 19 17 16 21 21 C 1.52998 * 109.47236 * 60.00208 * 19 17 16 22 22 C 1.50699 * 109.47025 * 180.02562 * 19 17 16 23 23 H 1.08002 * 120.00143 * 359.97438 * 22 19 17 24 24 C 1.37879 * 120.00209 * 179.97438 * 22 19 17 25 25 N 1.31514 * 119.99607 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 120.00276 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.47257 * 90.00083 * 26 24 22 28 28 H 1.48501 * 109.46848 * 209.99953 * 26 24 22 29 29 H 1.48504 * 109.47045 * 329.99773 * 26 24 22 30 30 H 1.09002 * 109.47105 * 60.00068 * 1 2 3 31 31 H 1.08997 * 109.47620 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47486 * 300.01042 * 1 2 3 33 33 H 1.08997 * 109.47080 * 239.99557 * 2 1 3 34 34 H 1.09003 * 109.46390 * 119.99717 * 2 1 3 35 35 H 1.09003 * 109.47532 * 59.99929 * 4 3 2 36 36 H 1.09001 * 109.47207 * 299.99682 * 4 3 2 37 37 H 1.09000 * 109.47017 * 55.98171 * 5 4 3 38 38 H 1.09002 * 109.47197 * 295.97656 * 5 4 3 39 39 H 1.07996 * 120.47952 * 359.97438 * 9 8 7 40 40 H 1.08008 * 120.73052 * 179.71889 * 10 9 8 41 41 H 1.07997 * 120.29394 * 180.20041 * 11 10 9 42 42 H 1.07998 * 119.54536 * 179.79242 * 12 11 10 43 43 H 1.09001 * 109.47061 * 65.64065 * 18 17 16 44 44 H 1.09004 * 109.46863 * 185.63951 * 18 17 16 45 45 H 1.09000 * 109.47054 * 305.63612 * 18 17 16 46 46 H 1.08998 * 109.46830 * 59.99815 * 21 19 17 47 47 H 1.08995 * 109.47158 * 180.02562 * 21 19 17 48 48 H 1.09003 * 109.46904 * 299.99673 * 21 19 17 49 49 H 0.96998 * 120.00161 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 7 5.2826 3.0548 0.0973 7 6 6.1911 3.0082 -0.9353 8 6 5.8824 2.8290 -2.3693 9 6 6.9197 2.8021 -3.3029 10 6 6.6140 2.6389 -4.6420 11 6 5.2815 2.4975 -5.0056 12 6 4.3038 2.5324 -4.0288 13 7 4.6199 2.6942 -2.7601 14 7 7.3841 3.1470 -0.4052 15 7 7.2838 3.2845 0.8687 16 6 6.0206 3.2320 1.2300 17 7 5.5315 3.3371 2.5192 18 6 5.9961 2.2191 3.3512 19 6 5.8990 4.6272 3.1181 20 1 6.9849 4.7179 3.1478 21 6 5.3149 5.7645 2.2777 22 6 5.3505 4.7048 4.5196 23 1 4.7851 3.8786 4.9248 24 6 5.5704 5.8306 5.2847 25 7 6.2593 6.8364 4.7915 26 14 4.8912 5.9265 7.0222 27 1 5.8929 5.3858 7.9759 28 1 4.5983 7.3422 7.3616 29 1 3.6423 5.1277 7.1102 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.8341 0.9763 -0.8892 36 1 3.8332 0.9766 0.8908 37 1 3.3633 3.4381 0.8512 38 1 3.4847 3.4049 -0.9244 39 1 7.9460 2.9118 -2.9848 40 1 7.3949 2.6186 -5.3879 41 1 5.0109 2.3651 -6.0427 42 1 3.2664 2.4261 -4.3096 43 1 7.0777 2.2808 3.4717 44 1 5.5180 2.2711 4.3295 45 1 5.7372 1.2760 2.8700 46 1 4.2291 5.6737 2.2481 47 1 5.5879 6.7217 2.7218 48 1 5.7121 5.7082 1.2641 49 1 6.4138 7.6286 5.3296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001768146977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:22 Heat of formation + Delta-G solvation = 69.603752 kcal Electronic energy + Delta-G solvation = -31122.849107 eV Core-core repulsion = 27086.624802 eV Total energy + Delta-G solvation = -4036.224305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.07300 -40.96849 -39.21862 -38.87040 -36.36627 -34.98282 -33.52607 -33.22834 -32.51769 -31.41705 -30.14731 -29.98226 -27.59166 -26.27556 -25.40289 -24.72543 -24.30998 -23.71813 -23.37944 -22.01039 -21.10606 -18.72840 -18.49737 -18.07729 -17.56720 -17.37895 -17.27705 -17.06245 -16.64527 -16.62482 -16.25567 -15.66932 -15.44267 -15.25842 -15.05744 -14.86723 -14.75609 -14.22841 -14.03935 -13.75086 -13.38175 -13.32175 -13.24474 -13.07722 -12.93974 -12.78037 -12.75062 -12.69688 -12.27402 -12.25096 -12.18641 -12.15339 -12.08288 -11.77212 -11.34660 -11.13612 -10.99858 -10.78197 -10.66877 -10.59982 -10.53509 -9.62826 -9.51298 -8.15562 -6.29941 -0.41712 0.30390 0.84270 1.03768 1.45786 1.46255 1.57405 1.66562 2.39667 2.53233 2.65308 2.86639 3.08353 3.16883 3.50824 3.68960 3.82583 3.91992 3.99634 4.09402 4.12802 4.13851 4.15562 4.28678 4.31998 4.34122 4.44341 4.46522 4.57109 4.60471 4.63134 4.69084 4.79857 4.83753 4.86313 4.87893 4.95892 5.02481 5.04672 5.15163 5.22597 5.27914 5.31326 5.43083 5.59601 5.69504 5.77371 5.91370 6.09547 6.11075 6.52533 6.79839 6.82698 7.39057 7.50501 8.91881 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003560 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.426757 B = 7864.319863 C = 9817.990108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.395 6.395 4 C 0.082 3.918 5 C 0.124 3.876 6 N -0.445 5.445 7 C 0.212 3.788 8 C 0.170 3.830 9 C -0.134 4.134 10 C -0.067 4.067 11 C -0.144 4.144 12 C 0.098 3.902 13 N -0.496 5.496 14 N -0.291 5.291 15 N -0.348 5.348 16 C 0.377 3.623 17 N -0.469 5.469 18 C 0.055 3.945 19 C 0.236 3.764 20 H -0.023 1.023 21 C -0.113 4.113 22 C -0.523 4.523 23 H 0.075 0.925 24 C 0.014 3.986 25 N -0.921 5.921 26 Si 0.970 3.030 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.262 1.262 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.176 0.824 41 H 0.181 0.819 42 H 0.190 0.810 43 H 0.022 0.978 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.039 0.961 47 H 0.070 0.930 48 H -0.004 1.004 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -14.207 -20.740 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.314 6.314 4 C 0.004 3.996 5 C 0.001 3.999 6 N -0.137 5.137 7 C -0.053 4.053 8 C 0.034 3.966 9 C -0.157 4.157 10 C -0.092 4.092 11 C -0.164 4.164 12 C -0.061 4.061 13 N -0.207 5.207 14 N -0.134 5.134 15 N -0.193 5.193 16 C 0.021 3.979 17 N -0.196 5.196 18 C -0.092 4.092 19 C 0.130 3.870 20 H -0.005 1.005 21 C -0.171 4.171 22 C -0.561 4.561 23 H 0.093 0.907 24 C -0.185 4.185 25 N -0.560 5.560 26 Si 0.795 3.205 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.186 1.186 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.193 0.807 41 H 0.198 0.802 42 H 0.207 0.793 43 H 0.040 0.960 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.015 0.985 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.662 -13.762 -19.908 25.706 hybrid contribution 0.456 0.328 0.684 0.885 sum -8.206 -13.435 -19.224 24.847 Atomic orbital electron populations 1.21751 0.92075 1.03571 1.02937 1.22711 0.96801 0.82237 1.00741 1.87800 1.19313 1.28697 1.95547 1.22245 0.82403 0.94765 1.00214 1.21640 0.73965 0.98254 1.06002 1.46295 1.09296 1.52603 1.05555 1.22804 0.85663 1.06689 0.90190 1.18021 0.90985 1.01164 0.86475 1.22133 1.00083 0.99380 0.94067 1.21999 0.98572 0.93984 0.94658 1.22742 0.92788 0.97963 1.02944 1.23323 1.02231 0.94203 0.86309 1.67512 1.18587 1.12851 1.21761 1.74169 1.19577 1.18127 1.01486 1.74706 1.16657 1.22203 1.05693 1.22702 0.85935 0.99968 0.89330 1.59116 1.57778 1.06794 0.95873 1.22226 0.98351 0.90555 0.98094 1.19120 0.92707 0.81870 0.93260 1.00518 1.21584 0.98772 1.01942 0.94791 1.21311 1.34792 1.02945 0.97043 0.90734 1.25783 0.95154 0.94952 1.02656 1.70046 1.40670 1.06804 1.38474 0.85366 0.78942 0.77275 0.78919 1.20078 1.21082 1.18612 0.91640 0.88828 0.92533 0.92243 0.93257 0.92277 0.94193 0.88950 0.86109 0.84168 0.80657 0.80167 0.79298 0.95958 0.88773 0.91352 0.94225 0.91136 0.98501 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.98 6.66 71.98 0.48 1.46 16 3 O -0.39 -10.37 10.34 -148.98 -1.54 -11.91 16 4 C 0.08 2.29 6.26 71.98 0.45 2.74 16 5 C 0.12 4.03 5.85 86.38 0.51 4.54 16 6 N -0.45 -17.07 2.83 -516.88 -1.46 -18.53 16 7 C 0.21 7.89 7.82 136.17 1.07 8.95 16 8 C 0.17 4.83 6.75 41.84 0.28 5.11 16 9 C -0.13 -2.99 9.74 22.61 0.22 -2.77 16 10 C -0.07 -0.87 10.16 22.44 0.23 -0.64 16 11 C -0.14 -1.45 10.11 22.42 0.23 -1.23 16 12 C 0.10 1.46 11.17 84.71 0.95 2.41 16 13 N -0.50 -11.91 7.57 -185.08 -1.40 -13.31 16 14 N -0.29 -12.48 11.86 -50.81 -0.60 -13.08 16 15 N -0.35 -16.73 12.13 -58.11 -0.70 -17.43 16 16 C 0.38 16.90 5.00 260.19 1.30 18.20 16 17 N -0.47 -21.65 4.61 -711.14 -3.28 -24.93 16 18 C 0.05 2.25 9.14 127.69 1.17 3.42 16 19 C 0.24 12.71 1.99 44.17 0.09 12.80 16 20 H -0.02 -1.42 8.09 -2.38 -0.02 -1.44 16 21 C -0.11 -6.01 8.84 71.98 0.64 -5.37 16 22 C -0.52 -28.53 7.95 25.60 0.20 -28.32 16 23 H 0.07 3.88 6.40 -2.91 -0.02 3.86 16 24 C 0.01 0.76 5.30 84.66 0.45 1.21 16 25 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 26 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 29 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.58 7.75 -2.39 -0.02 1.56 16 36 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 3.32 8.11 -2.39 -0.02 3.30 16 38 H 0.12 3.70 6.57 -2.39 -0.02 3.68 16 39 H 0.14 3.27 7.86 -2.91 -0.02 3.25 16 40 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 3.76 6.30 -2.38 -0.02 3.75 16 45 H 0.07 2.41 8.11 -2.39 -0.02 2.39 16 46 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 48 H 0.00 -0.22 7.22 -2.39 -0.02 -0.23 16 49 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -73.64 404.65 3.21 -70.43 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.94 Total: 16.20 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 8.99 Total: 21.04 kcal Atomic # 7 Polarization: -133.72 SS G_CDS: -7.21 Total: -140.93 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.54 Total: -11.91 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.64 3.21 -70.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001768146977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.033 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds