Wall clock time and date at job start Wed Apr 1 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48497 * 109.47255 * 240.00122 * 3 2 1 5 5 H 1.48503 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46967 * 120.00311 * 3 2 1 7 7 C 1.37874 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00037 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99719 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47313 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.46908 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99631 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00265 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99875 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00171 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47129 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.47022 * 179.97438 * 17 16 15 19 19 N 1.46894 * 109.47213 * 174.51956 * 18 17 16 20 20 C 1.47160 * 111.00147 * 53.67592 * 19 18 17 21 21 C 1.52888 * 108.50541 * 52.15754 * 20 19 18 22 22 C 1.50714 * 109.95981 * 50.39459 * 21 20 19 23 23 C 1.38678 * 118.48887 * 163.47487 * 22 21 20 24 24 C 1.38037 * 120.34886 * 179.97438 * 23 22 21 25 25 C 1.38264 * 119.82258 * 359.54434 * 24 23 22 26 26 C 1.38003 * 119.87421 * 0.33043 * 25 24 23 27 27 C 1.37829 * 121.66166 * 343.09494 * 22 21 20 28 28 C 1.46631 * 110.99921 * 176.66864 * 19 18 17 29 29 H 0.97003 * 120.00336 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47707 * 60.00254 * 9 7 2 31 31 H 1.08997 * 109.47529 * 299.99669 * 9 7 2 32 32 H 1.08999 * 109.46896 * 59.99503 * 10 9 7 33 33 H 1.09003 * 109.46932 * 300.00172 * 10 9 7 34 34 H 1.08996 * 109.46997 * 59.99940 * 11 10 9 35 35 H 1.08999 * 109.46820 * 300.00002 * 11 10 9 36 36 H 0.96997 * 120.00235 * 359.97438 * 12 11 10 37 37 H 0.96998 * 120.00020 * 0.02562 * 15 13 12 38 38 H 1.09003 * 109.47064 * 59.99854 * 16 15 13 39 39 H 1.09008 * 109.46704 * 300.00286 * 16 15 13 40 40 H 1.09003 * 109.47323 * 59.99943 * 17 16 15 41 41 H 1.08996 * 109.47235 * 299.99972 * 17 16 15 42 42 H 1.08992 * 109.46924 * 54.51404 * 18 17 16 43 43 H 1.09005 * 109.46932 * 294.51821 * 18 17 16 44 44 H 1.09006 * 109.62922 * 171.86880 * 20 19 18 45 45 H 1.09003 * 109.62685 * 292.44827 * 20 19 18 46 46 H 1.09007 * 109.39098 * 170.54297 * 21 20 19 47 47 H 1.08998 * 109.39238 * 290.33433 * 21 20 19 48 48 H 1.07995 * 119.82826 * 359.75072 * 23 22 21 49 49 H 1.07996 * 120.08871 * 179.82327 * 24 23 22 50 50 H 1.08006 * 120.05714 * 180.34886 * 25 24 23 51 51 H 1.08005 * 119.81480 * 179.97438 * 26 25 24 52 52 H 1.09008 * 109.29990 * 168.78693 * 28 19 18 53 53 H 1.08993 * 109.30163 * 49.41509 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4323 -6.1006 0.0007 13 6 1.9830 -7.3712 0.0008 14 8 0.7876 -7.5935 0.0009 15 7 2.8588 -8.3956 0.0009 16 6 2.3705 -9.7769 0.0004 17 6 3.5606 -10.7385 0.0012 18 6 3.0506 -12.1811 0.0014 19 7 4.1872 -13.1023 -0.1301 20 6 5.2048 -12.8346 0.8987 21 6 4.5216 -12.8261 2.2664 22 6 3.6808 -14.0663 2.4293 23 6 3.2647 -14.4207 3.7038 24 6 2.4929 -15.5487 3.8971 25 6 2.1250 -16.3241 2.8131 26 6 2.5364 -15.9709 1.5440 27 6 3.3161 -14.8401 1.3486 28 6 3.7439 -14.4979 -0.0545 29 1 -0.4851 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8905 34 1 0.8533 -5.0451 -0.8896 35 1 0.8539 -5.0446 0.8903 36 1 3.3859 -5.9233 0.0003 37 1 3.8125 -8.2184 0.0012 38 1 1.7652 -9.9480 -0.8898 39 1 1.7646 -9.9483 0.8903 40 1 4.1655 -10.5673 0.8917 41 1 4.1667 -10.5672 -0.8883 42 1 2.3674 -12.3250 -0.8356 43 1 2.5270 -12.3812 0.9363 44 1 5.9649 -13.6155 0.8738 45 1 5.6662 -11.8645 0.7137 46 1 5.2794 -12.7972 3.0494 47 1 3.8844 -11.9454 2.3472 48 1 3.5490 -13.8130 4.5501 49 1 2.1736 -15.8223 4.8918 50 1 1.5164 -17.2043 2.9593 51 1 2.2487 -16.5775 0.6980 52 1 4.5633 -15.1528 -0.3511 53 1 2.9043 -14.6465 -0.7335 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171733934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:47 Heat of formation + Delta-G solvation = -44.659357 kcal Electronic energy + Delta-G solvation = -28647.587869 eV Core-core repulsion = 24709.949087 eV Total energy + Delta-G solvation = -3937.638782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51568 -40.98287 -38.59692 -37.16944 -36.20256 -35.17461 -33.69714 -33.52176 -32.68672 -31.19755 -30.14593 -28.62335 -26.94662 -25.07563 -24.88898 -23.93930 -23.11001 -22.34252 -22.24940 -21.79709 -20.08126 -19.15104 -18.51651 -17.62945 -17.42818 -17.19795 -16.76189 -16.69779 -16.46851 -16.13945 -15.84109 -15.56734 -15.36156 -15.19186 -15.04844 -14.77288 -14.57964 -14.23798 -14.01820 -13.73068 -13.70096 -13.45363 -13.20562 -13.09056 -12.83713 -12.70101 -12.53463 -12.43304 -12.42451 -12.37226 -12.30442 -12.02589 -11.81488 -11.65049 -11.64426 -11.49732 -11.30126 -11.13680 -10.53049 -10.38793 -9.75103 -9.71083 -9.50343 -9.30560 -8.17573 -6.29303 0.39437 0.42760 1.42965 1.46146 1.53916 1.71078 2.15295 2.43576 2.78693 2.94158 3.16082 3.37108 3.74530 3.81373 3.94337 3.97414 4.06563 4.09979 4.16213 4.19501 4.23549 4.25025 4.28687 4.47995 4.55223 4.57926 4.60031 4.64350 4.65396 4.71398 4.77721 4.87624 4.91205 4.97633 5.01533 5.05695 5.08984 5.17101 5.17649 5.19001 5.28253 5.47640 5.49338 5.51669 5.56286 5.59012 5.64665 5.72925 5.85894 6.01994 6.06494 6.08996 6.09641 6.24278 6.87816 7.14072 7.40259 7.59632 8.94279 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.001320 C = 0.001310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.241718 B =21201.586152 C =21365.317733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.730 5.730 13 C 0.695 3.305 14 O -0.644 6.644 15 N -0.729 5.729 16 C 0.142 3.858 17 C -0.114 4.114 18 C 0.056 3.944 19 N -0.526 5.526 20 C 0.050 3.950 21 C -0.119 4.119 22 C -0.090 4.090 23 C -0.135 4.135 24 C -0.132 4.132 25 C -0.133 4.133 26 C -0.124 4.124 27 C -0.125 4.125 28 C 0.092 3.908 29 H 0.263 0.737 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.413 0.587 37 H 0.414 0.586 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.033 0.967 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.128 0.872 49 H 0.134 0.866 50 H 0.137 0.863 51 H 0.137 0.863 52 H 0.098 0.902 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.410 -36.562 3.697 39.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.385 5.385 13 C 0.395 3.605 14 O -0.526 6.526 15 N -0.386 5.386 16 C 0.017 3.983 17 C -0.152 4.152 18 C -0.072 4.072 19 N -0.247 5.247 20 C -0.078 4.078 21 C -0.157 4.157 22 C -0.091 4.091 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.127 4.127 28 C -0.036 4.036 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.249 0.751 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.146 0.854 49 H 0.152 0.848 50 H 0.155 0.845 51 H 0.155 0.845 52 H 0.116 0.884 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.415 -36.571 3.197 39.085 hybrid contribution -0.037 0.918 1.061 1.403 sum 13.378 -35.654 4.257 38.318 Atomic orbital electron populations 1.70112 1.07965 1.27819 1.51616 1.26025 0.95732 1.03550 0.94757 0.85463 0.78174 0.77902 0.79263 1.19010 1.21224 1.19014 1.21661 0.93783 0.91991 1.50591 0.91445 1.18951 0.94487 0.92993 0.95082 1.21589 0.98420 0.91604 1.02179 1.21066 0.91397 0.84731 1.00363 1.45010 1.10857 1.03517 1.79164 1.16213 0.85084 0.81503 0.77738 1.90893 1.16661 1.84899 1.60107 1.44890 1.09335 1.04669 1.79741 1.21100 0.97044 0.78958 1.01174 1.21723 0.96710 0.92327 1.04455 1.21996 0.92895 0.91477 1.00839 1.62721 1.11978 1.02673 1.47306 1.22329 0.94335 1.03680 0.87480 1.21174 0.99077 0.94909 1.00515 1.19795 0.99017 0.97286 0.92976 1.21358 0.99086 0.97801 0.97006 1.21392 0.98356 0.95345 0.99885 1.21395 1.00370 1.00519 0.92827 1.21361 0.97955 0.96845 0.98066 1.20584 0.98913 0.96089 0.97080 1.21174 1.01498 0.89706 0.91263 0.92857 0.98959 0.98986 0.91288 0.91264 0.93624 0.93661 0.75073 0.74947 0.92782 0.93287 0.89812 0.89200 0.90515 0.94853 0.90155 0.88391 0.89324 0.90352 0.85393 0.84762 0.84487 0.84490 0.88407 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 11 C 0.15 5.42 5.67 86.38 0.49 5.91 16 12 N -0.73 -20.46 5.56 -478.55 -2.66 -23.12 16 13 C 0.70 21.06 8.57 179.05 1.53 22.59 16 14 O -0.64 -26.30 16.34 -3.99 -0.07 -26.37 16 15 N -0.73 -14.34 5.56 -478.52 -2.66 -17.00 16 16 C 0.14 2.57 5.67 86.38 0.49 3.06 16 17 C -0.11 -1.23 4.54 30.59 0.14 -1.09 16 18 C 0.06 0.69 4.35 86.31 0.38 1.07 16 19 N -0.53 -5.82 5.12 -901.18 -4.61 -10.44 16 20 C 0.05 0.45 5.41 86.22 0.47 0.91 16 21 C -0.12 -1.24 5.04 29.82 0.15 -1.09 16 22 C -0.09 -1.26 5.05 -19.85 -0.10 -1.36 16 23 C -0.13 -1.90 9.66 22.33 0.22 -1.68 16 24 C -0.13 -1.74 10.05 22.23 0.22 -1.52 16 25 C -0.13 -1.66 10.05 22.22 0.22 -1.44 16 26 C -0.12 -1.55 9.65 22.33 0.22 -1.33 16 27 C -0.13 -1.67 5.24 -19.86 -0.10 -1.77 16 28 C 0.09 0.98 5.54 85.59 0.47 1.46 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.41 8.39 8.49 -92.71 -0.79 7.61 16 37 H 0.41 5.04 8.49 -92.71 -0.79 4.26 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 0.72 5.79 -2.39 -0.01 0.71 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.03 0.50 5.77 -2.38 -0.01 0.49 16 44 H 0.08 0.71 8.05 -2.38 -0.02 0.69 16 45 H 0.10 0.67 6.82 -2.39 -0.02 0.65 16 46 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 47 H 0.08 0.89 5.90 -2.39 -0.01 0.88 16 48 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 49 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 50 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 51 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 52 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 53 H 0.09 0.89 8.06 -2.39 -0.02 0.87 16 Total: -1.00 -75.51 419.35 -2.56 -78.07 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.67 Total: 18.58 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.80 Total: -8.43 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -9.65 Total: -107.61 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.07 Total: -26.37 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -75.51 -2.56 -78.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171733934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.409 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds