Wall clock time and date at job start Wed Apr 1 2020 03:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47429 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.47116 * 30.00463 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99992 * 3 2 1 7 7 C 1.37878 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00161 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 N 1.46896 * 109.47255 * 179.97438 * 16 15 13 18 18 C 1.46948 * 111.00183 * 293.79792 * 17 16 15 19 19 C 1.53049 * 109.36764 * 176.80851 * 18 17 16 20 20 N 1.46961 * 109.36177 * 58.40434 * 19 18 17 21 21 C 1.39671 * 110.99724 * 176.81226 * 20 19 18 22 22 C 1.38920 * 120.07194 * 123.52165 * 21 20 19 23 23 C 1.38103 * 119.92102 * 179.76210 * 22 21 20 24 24 C 1.38284 * 120.07485 * 0.51434 * 23 22 21 25 25 C 1.38280 * 120.15298 * 359.74022 * 24 23 22 26 26 C 1.38106 * 120.07290 * 0.02562 * 25 24 23 27 27 C 1.46956 * 110.87704 * 300.67780 * 20 19 18 28 28 C 1.46963 * 111.00029 * 169.99612 * 17 16 15 29 29 H 0.96990 * 120.00275 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 31 31 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 32 32 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 33 33 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 34 34 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 35 35 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 36 36 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 37 37 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 38 38 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 39 39 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 40 40 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 41 41 H 1.08999 * 109.48998 * 296.77780 * 18 17 16 42 42 H 1.09003 * 109.49079 * 56.83983 * 18 17 16 43 43 H 1.09000 * 109.49067 * 298.43821 * 19 18 17 44 44 H 1.09001 * 109.49268 * 178.36774 * 19 18 17 45 45 H 1.07996 * 120.03738 * 0.02562 * 22 21 20 46 46 H 1.08002 * 119.96161 * 180.24955 * 23 22 21 47 47 H 1.08009 * 119.92258 * 179.76108 * 24 23 22 48 48 H 1.07998 * 119.96480 * 180.02562 * 25 24 23 49 49 H 1.08002 * 120.03646 * 179.97438 * 26 25 24 50 50 H 1.08999 * 109.49195 * 299.35522 * 27 20 19 51 51 H 1.09002 * 109.48564 * 179.28964 * 27 20 19 52 52 H 1.09001 * 109.48867 * 303.15880 * 28 17 16 53 53 H 1.09000 * 109.48524 * 63.22347 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0014 11 6 5.5516 -2.6365 -0.0001 12 7 6.0400 -4.0176 -0.0009 13 6 7.3651 -4.2639 0.0005 14 8 8.1532 -3.3420 0.0019 15 6 7.8675 -5.6847 -0.0065 16 6 9.3974 -5.6846 -0.0102 17 7 9.8871 -7.0696 -0.0164 18 6 9.5439 -7.7552 1.2371 19 6 10.0000 -9.2141 1.1591 20 7 11.4488 -9.2593 0.9171 21 6 11.9144 -10.5761 0.9112 22 6 12.5961 -11.0685 -0.1946 23 6 13.0593 -12.3695 -0.1951 24 6 12.8360 -13.1851 0.8991 25 6 12.1532 -12.6998 1.9993 26 6 11.6914 -11.3983 2.0084 27 6 11.7921 -8.5737 -0.3365 28 6 11.3360 -7.1148 -0.2585 29 1 -0.4850 0.8399 0.0004 30 1 3.8746 -0.6808 0.8904 31 1 3.8753 -0.6796 -0.8895 32 1 3.6586 -3.1493 -0.8920 33 1 3.6580 -3.1512 0.8880 34 1 5.9143 -2.1237 0.8907 35 1 5.9157 -2.1215 -0.8892 36 1 5.4097 -4.7549 -0.0016 37 1 7.5063 -6.2021 0.8823 38 1 7.5019 -6.1949 -0.8976 39 1 9.7586 -5.1672 -0.8990 40 1 9.7629 -5.1743 0.8809 41 1 10.0443 -7.2618 2.0703 42 1 8.4649 -7.7191 1.3878 43 1 9.4792 -9.7147 0.3429 44 1 9.7724 -9.7171 2.0989 45 1 12.7673 -10.4333 -1.0510 46 1 13.5929 -12.7517 -1.0528 47 1 13.1960 -14.2034 0.8944 48 1 11.9808 -13.3393 2.8523 49 1 11.1578 -11.0200 2.8678 50 1 11.2916 -9.0670 -1.1697 51 1 12.8711 -8.6098 -0.4871 52 1 11.5635 -6.6118 -1.1984 53 1 11.8568 -6.6141 0.5577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174625136.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:09 Heat of formation + Delta-G solvation = -28.547765 kcal Electronic energy + Delta-G solvation = -28621.545627 eV Core-core repulsion = 24684.605496 eV Total energy + Delta-G solvation = -3936.940131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.40359 -40.74613 -39.23668 -37.09925 -36.54802 -35.13773 -33.44926 -32.73537 -32.45868 -31.40180 -30.31722 -28.91250 -27.12299 -25.26702 -24.86247 -23.49547 -22.68166 -22.39275 -22.22457 -20.96817 -20.77417 -18.97678 -18.73028 -18.02786 -17.05238 -16.96971 -16.75645 -16.48965 -16.24595 -16.16581 -16.14849 -15.75157 -15.46715 -15.28680 -14.94579 -14.79364 -14.67297 -14.42126 -14.22772 -14.13829 -13.81208 -13.56732 -13.44213 -13.12276 -12.84620 -12.73494 -12.69654 -12.48469 -12.36414 -12.22860 -12.00736 -11.93547 -11.83185 -11.77562 -11.59780 -11.57664 -11.33436 -10.86276 -10.76505 -10.66751 -10.06901 -9.84107 -9.43095 -8.79160 -8.29757 -6.33657 0.47016 0.50353 1.36388 1.38131 1.49684 1.65772 2.15885 2.35939 2.63601 2.89223 2.98079 3.06193 3.73142 3.77080 3.92599 3.93167 4.06244 4.09036 4.09822 4.16634 4.20844 4.23635 4.31988 4.34708 4.39536 4.44899 4.50845 4.58627 4.60772 4.62796 4.75572 4.77400 4.84610 4.85356 4.89174 4.92976 4.94877 4.96869 5.03912 5.04886 5.14275 5.32003 5.41026 5.51660 5.53067 5.55705 5.64982 5.68153 5.81605 5.93197 5.95902 6.06245 6.27159 6.35925 6.59849 6.74684 7.27994 7.31477 8.86674 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.001318 C = 0.001288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.501836 B =21234.884427 C =21732.689284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.126 3.874 12 N -0.718 5.718 13 C 0.508 3.492 14 O -0.592 6.592 15 C -0.124 4.124 16 C 0.079 3.921 17 N -0.539 5.539 18 C 0.050 3.950 19 C 0.065 3.935 20 N -0.502 5.502 21 C 0.099 3.901 22 C -0.184 4.184 23 C -0.102 4.102 24 C -0.156 4.156 25 C -0.102 4.102 26 C -0.155 4.155 27 C 0.059 3.941 28 C 0.056 3.944 29 H 0.266 0.734 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.416 0.584 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.129 0.871 50 H 0.056 0.944 51 H 0.093 0.907 52 H 0.093 0.907 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.078 -28.376 1.162 40.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.002 3.998 12 N -0.370 5.370 13 C 0.296 3.704 14 O -0.473 6.473 15 C -0.164 4.164 16 C -0.050 4.050 17 N -0.264 5.264 18 C -0.078 4.078 19 C -0.060 4.060 20 N -0.217 5.217 21 C 0.001 3.999 22 C -0.205 4.205 23 C -0.120 4.120 24 C -0.175 4.175 25 C -0.120 4.120 26 C -0.175 4.175 27 C -0.068 4.068 28 C -0.072 4.072 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.253 0.747 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.151 0.849 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.146 0.854 50 H 0.074 0.926 51 H 0.111 0.889 52 H 0.111 0.889 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 29.431 -27.526 1.165 40.314 hybrid contribution -0.452 0.901 0.125 1.016 sum 28.980 -26.624 1.290 39.374 Atomic orbital electron populations 1.70051 1.08212 1.28130 1.52686 1.25958 0.95547 1.03349 0.94183 0.85717 0.79508 0.78623 0.79178 1.19256 1.20991 1.17233 1.21477 0.91919 0.93288 1.50284 0.94356 1.19471 0.94078 0.94810 0.96721 1.21480 0.92106 0.98025 1.02214 1.21269 0.94316 0.83080 1.01148 1.46024 1.07320 1.09187 1.74437 1.21263 0.81940 0.92482 0.74720 1.90689 1.56383 1.48384 1.51873 1.21584 0.96308 0.91530 1.06971 1.21645 0.93850 0.88101 1.01362 1.62181 1.14201 1.15221 1.34796 1.22336 1.02024 0.93274 0.90194 1.22298 0.84604 0.96765 1.02327 1.59290 1.15022 1.12538 1.34884 1.19131 0.98155 0.88188 0.94396 1.21526 1.03917 0.97196 0.97812 1.21312 0.98382 0.93362 0.98993 1.21395 1.00980 1.00951 0.94187 1.21313 0.96692 0.95108 0.98937 1.20989 1.04103 0.94497 0.97898 1.22322 1.01491 0.93404 0.89565 1.22204 0.87104 0.96104 1.01798 0.92507 0.96199 0.96298 0.91638 0.91673 0.92718 0.92595 0.74716 0.86622 0.86040 0.90828 0.95381 0.94555 0.87966 0.93213 0.88711 0.84863 0.84395 0.84422 0.84174 0.85352 0.92598 0.88905 0.88872 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 2 C 0.01 0.38 5.47 84.66 0.46 0.84 16 3 Si 0.95 44.25 27.47 68.60 1.88 46.14 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.53 -30.04 9.66 25.60 0.25 -29.79 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.55 5.27 30.59 0.16 -3.38 16 11 C 0.13 3.89 5.67 86.38 0.49 4.38 16 12 N -0.72 -17.09 5.56 -463.06 -2.57 -19.66 16 13 C 0.51 12.51 7.83 87.66 0.69 13.20 16 14 O -0.59 -20.06 15.98 -3.04 -0.05 -20.11 16 15 C -0.12 -1.91 5.63 29.85 0.17 -1.74 16 16 C 0.08 1.39 4.25 86.30 0.37 1.75 16 17 N -0.54 -7.94 4.71 -895.74 -4.22 -12.15 16 18 C 0.05 0.64 5.41 86.31 0.47 1.11 16 19 C 0.07 0.82 5.38 86.31 0.46 1.29 16 20 N -0.50 -7.31 4.76 -694.77 -3.30 -10.61 16 21 C 0.10 1.47 5.64 38.22 0.22 1.69 16 22 C -0.18 -2.47 8.82 22.40 0.20 -2.27 16 23 C -0.10 -1.18 10.04 22.25 0.22 -0.95 16 24 C -0.16 -1.70 10.04 22.29 0.22 -1.48 16 25 C -0.10 -1.17 10.04 22.25 0.22 -0.95 16 26 C -0.15 -2.11 9.19 22.40 0.21 -1.90 16 27 C 0.06 0.76 4.29 86.31 0.37 1.13 16 28 C 0.06 0.79 5.61 86.31 0.48 1.27 16 29 H 0.27 15.48 8.31 -92.72 -0.77 14.71 16 30 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 31 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.42 7.32 8.47 -92.71 -0.79 6.53 16 37 H 0.12 1.28 6.49 -2.38 -0.02 1.26 16 38 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.47 7.98 -2.38 -0.02 1.45 16 40 H 0.03 0.59 8.08 -2.39 -0.02 0.57 16 41 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.10 1.00 6.34 -2.39 -0.02 0.98 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 1.00 6.82 -2.39 -0.02 0.99 16 45 H 0.13 1.47 5.81 -2.91 -0.02 1.45 16 46 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 47 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 48 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 49 H 0.13 1.51 7.18 -2.91 -0.02 1.49 16 50 H 0.06 0.72 7.57 -2.39 -0.02 0.70 16 51 H 0.09 1.04 7.18 -2.39 -0.02 1.02 16 52 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 53 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -72.93 415.85 -2.13 -75.06 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.05 Total: 16.47 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 5.78 Total: -16.27 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -9.80 Total: -101.29 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Total: -72.93 -2.13 -75.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174625136.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.517 kcal (2) G-P(sol) polarization free energy of solvation -72.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds