Wall clock time and date at job start Wed Apr 1 2020 03:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46633 * 2 1 4 4 N 1.46506 * 109.46730 * 119.99642 * 2 1 3 5 5 C 1.39983 * 119.99892 * 275.00056 * 4 2 1 6 6 C 1.40430 * 125.97749 * 0.02562 * 5 4 2 7 7 C 1.35249 * 107.85888 * 179.97438 * 6 5 4 8 8 N 1.34952 * 107.86687 * 0.02562 * 7 6 5 9 9 C 1.46503 * 125.97335 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47080 * 124.99883 * 9 8 7 11 11 H 1.07995 * 120.00003 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99813 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99768 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00136 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47125 * 89.99951 * 14 12 10 16 16 H 1.48501 * 109.47080 * 210.00024 * 14 12 10 17 17 H 1.48505 * 109.47223 * 329.99942 * 14 12 10 18 18 N 1.31224 * 125.97690 * 179.69672 * 5 4 2 19 19 C 1.50699 * 109.46884 * 239.99631 * 2 1 3 20 20 N 1.31067 * 126.66262 * 284.94988 * 19 2 1 21 21 N 1.28840 * 107.99063 * 180.02562 * 20 19 2 22 22 N 1.28738 * 109.39684 * 359.73877 * 21 20 19 23 23 N 1.29018 * 108.81055 * 0.43627 * 22 21 20 24 24 C 1.46499 * 126.44210 * 179.83338 * 23 22 21 25 25 C 1.53000 * 109.46840 * 299.69390 * 24 23 22 26 26 C 1.53001 * 109.46886 * 180.02562 * 25 24 23 27 27 C 1.53002 * 109.46963 * 299.99499 * 26 25 24 28 28 C 1.52997 * 109.47092 * 60.00194 * 27 26 25 29 29 C 1.53002 * 109.46799 * 59.69156 * 24 23 22 30 30 H 1.08995 * 109.47363 * 300.00361 * 1 2 3 31 31 H 1.08999 * 109.47352 * 60.00456 * 1 2 3 32 32 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 33 33 H 0.96993 * 119.99765 * 95.00648 * 4 2 1 34 34 H 1.07997 * 126.07090 * 0.02562 * 6 5 4 35 35 H 1.08001 * 126.06424 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47028 * 244.99969 * 9 8 7 37 37 H 1.08998 * 109.47162 * 4.99681 * 9 8 7 38 38 H 0.97007 * 119.99520 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.47391 * 179.69059 * 24 23 22 40 40 H 1.09001 * 109.47194 * 299.99493 * 25 24 23 41 41 H 1.08992 * 109.47399 * 59.99666 * 25 24 23 42 42 H 1.09000 * 109.47437 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47508 * 59.99571 * 26 25 24 44 44 H 1.09002 * 109.47067 * 300.00341 * 27 26 25 45 45 H 1.09000 * 109.47312 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47375 * 180.02562 * 28 27 26 47 47 H 1.09002 * 109.47497 * 59.99850 * 28 27 26 48 48 H 1.09002 * 109.47075 * 299.99543 * 29 24 23 49 49 H 1.08996 * 109.47407 * 60.00500 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1519 0.0078 2.4021 6 6 1.8555 1.3652 2.6064 7 6 2.1165 1.6564 3.9012 8 7 2.5617 0.5304 4.4972 9 6 2.9594 0.3993 5.9011 10 6 2.1743 -0.7151 6.5436 11 1 1.4517 -1.2704 5.9641 12 6 2.3785 -1.0257 7.8714 13 7 1.6938 -1.9985 8.4319 14 14 3.6278 -0.0647 8.8739 15 1 2.9626 1.1026 9.5063 16 1 4.1963 -0.9419 9.9287 17 1 4.7179 0.4092 7.9836 18 7 2.5704 -0.4928 3.5406 19 6 2.0323 -0.7105 -1.2304 20 7 2.0374 -2.0043 -1.4397 21 7 2.5451 -2.2170 -2.6047 22 7 2.8589 -1.0920 -3.1462 23 7 2.5634 -0.1395 -2.3276 24 6 2.7627 1.2943 -2.5524 25 6 4.2511 1.5744 -2.7697 26 6 4.4592 3.0720 -3.0039 27 6 3.6722 3.5090 -4.2411 28 6 2.1838 3.2288 -4.0238 29 6 1.9756 1.7307 -3.7898 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1527 34 1 1.4842 2.0540 1.8622 35 1 1.9910 2.6192 4.3741 36 1 4.0242 0.1730 5.9574 37 1 2.7584 1.3340 6.4244 38 1 1.8378 -2.2172 9.3660 39 1 2.4113 1.8507 -1.6834 40 1 4.8118 1.2636 -1.8882 41 1 4.6024 1.0181 -3.6386 42 1 5.5195 3.2716 -3.1592 43 1 4.1080 3.6281 -2.1347 44 1 4.0234 2.9529 -5.1103 45 1 3.8208 4.5758 -4.4082 46 1 1.6231 3.5397 -4.9054 47 1 1.8325 3.7848 -3.1546 48 1 2.3270 1.1744 -4.6588 49 1 0.9153 1.5312 -3.6350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189857710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:38 Heat of formation + Delta-G solvation = 188.212223 kcal Electronic energy + Delta-G solvation = -30161.432230 eV Core-core repulsion = 26162.643925 eV Total energy + Delta-G solvation = -3998.788305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.41308 -40.40777 -39.33567 -36.99916 -35.24759 -33.68936 -32.57771 -31.49844 -31.34053 -30.50177 -29.99618 -28.91465 -26.95995 -25.05390 -24.87952 -23.35135 -22.85520 -22.37590 -21.60911 -20.30349 -20.19973 -19.57048 -18.06272 -17.17098 -16.99118 -16.70797 -16.26030 -15.85187 -15.10119 -14.88427 -14.85257 -14.54156 -14.37250 -14.03218 -13.87560 -13.58412 -13.47512 -13.14347 -13.10298 -12.92764 -12.64831 -12.52168 -12.36940 -12.26150 -12.00566 -11.93784 -11.83349 -11.79592 -11.47119 -11.33925 -11.13042 -11.06009 -11.04165 -10.73147 -10.65038 -10.48698 -10.24178 -9.85706 -9.74250 -9.41053 -8.74577 -8.08777 -7.21660 -6.20986 -4.22970 0.99070 1.61232 2.07132 2.73183 2.98240 3.15879 3.22754 3.25526 3.49475 3.65498 3.68137 3.90452 3.94753 4.13833 4.24287 4.27263 4.41022 4.44700 4.48687 4.70968 4.81155 4.82647 4.89738 4.94305 5.06287 5.08842 5.19633 5.29218 5.33365 5.34982 5.40711 5.42299 5.48164 5.55136 5.58300 5.60996 5.61585 5.75077 5.79557 5.93154 6.03099 6.09396 6.30904 6.37024 6.60879 6.86500 7.30447 7.47175 7.82652 8.01587 8.36769 8.44783 8.70574 8.90756 9.33995 10.91810 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002317 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.399461 B =12081.105968 C =12943.945061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.261 3.739 3 H 0.096 0.904 4 N -0.716 5.716 5 C 0.309 3.691 6 C -0.333 4.333 7 C 0.069 3.931 8 N -0.324 5.324 9 C 0.233 3.767 10 C -0.533 4.533 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.887 5.887 14 Si 0.872 3.128 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.264 1.264 18 N -0.317 5.317 19 C 0.180 3.820 20 N -0.290 5.290 21 N -0.077 5.077 22 N -0.092 5.092 23 N -0.297 5.297 24 C 0.142 3.858 25 C -0.129 4.129 26 C -0.116 4.116 27 C -0.126 4.126 28 C -0.115 4.115 29 C -0.128 4.128 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.410 0.590 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.268 0.732 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 16.391 -25.672 30.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.150 3.850 3 H 0.114 0.886 4 N -0.360 5.360 5 C 0.052 3.948 6 C -0.366 4.366 7 C -0.082 4.082 8 N -0.103 5.103 9 C 0.114 3.886 10 C -0.571 4.571 11 H 0.104 0.896 12 C -0.128 4.128 13 N -0.525 5.525 14 Si 0.699 3.301 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.189 1.189 18 N -0.148 5.148 19 C -0.099 4.099 20 N -0.139 5.139 21 N -0.070 5.070 22 N -0.077 5.077 23 N -0.099 5.099 24 C 0.041 3.959 25 C -0.168 4.168 26 C -0.154 4.154 27 C -0.163 4.163 28 C -0.153 4.153 29 C -0.166 4.166 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.150 0.850 35 H 0.182 0.818 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.166 14.181 -25.540 29.293 hybrid contribution 0.228 1.561 0.699 1.726 sum 2.394 15.742 -24.841 29.507 Atomic orbital electron populations 1.22357 0.93086 1.04203 1.02960 1.18868 0.94368 0.94098 0.77642 0.88632 1.43152 1.76728 1.12186 1.03920 1.19055 0.98330 0.90544 0.86825 1.20711 1.23106 0.95423 0.97336 1.22337 0.99386 0.93136 0.93378 1.48604 1.47461 1.04545 1.09670 1.19995 0.97029 0.99153 0.72424 1.21114 1.23466 1.16511 0.95974 0.89569 1.24842 0.95727 0.94975 0.97288 1.69878 1.40588 1.28983 1.13027 0.86918 0.82114 0.80382 0.80728 1.19778 1.20568 1.18917 1.77572 1.29502 1.11880 0.95827 1.26273 0.99621 0.90633 0.93381 1.75003 1.17392 1.11416 1.10104 1.78654 1.11569 1.15368 1.01412 1.78790 1.18649 0.92189 1.18089 1.48743 1.39609 1.10030 1.11479 1.22057 0.99193 0.72867 1.01819 1.21925 0.92480 0.98379 1.03971 1.21515 1.01261 0.93800 0.98786 1.21623 0.94730 1.01717 0.98227 1.21525 0.97020 0.94001 1.02795 1.21937 1.00125 0.97863 0.96701 0.89753 0.92053 0.90873 0.75356 0.85021 0.81789 0.94205 0.93593 0.92218 0.86391 0.90665 0.89882 0.90636 0.91064 0.91467 0.91156 0.90671 0.91096 0.89843 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.48 37.16 0.35 -1.28 16 2 C 0.26 2.84 2.92 -69.08 -0.20 2.64 16 3 H 0.10 0.83 5.63 -51.93 -0.29 0.54 16 4 N -0.72 -10.72 5.28 -54.70 -0.29 -11.01 16 5 C 0.31 5.57 8.14 -154.55 -1.26 4.31 16 6 C -0.33 -5.15 9.92 -39.82 -0.40 -5.55 16 7 C 0.07 1.18 11.43 -17.24 -0.20 0.98 16 8 N -0.32 -7.02 3.67 -62.56 -0.23 -7.25 16 9 C 0.23 5.43 5.33 -5.19 -0.03 5.41 16 10 C -0.53 -15.00 9.78 -34.44 -0.34 -15.34 16 11 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 12 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 14 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 18 N -0.32 -7.15 12.41 31.41 0.39 -6.76 16 19 C 0.18 2.15 6.91 -155.43 -1.07 1.07 16 20 N -0.29 -4.30 12.09 32.70 0.40 -3.91 16 21 N -0.08 -1.16 13.43 60.35 0.81 -0.35 16 22 N -0.09 -1.17 13.04 60.35 0.79 -0.38 16 23 N -0.30 -3.02 3.06 -51.81 -0.16 -3.18 16 24 C 0.14 0.90 2.90 -67.93 -0.20 0.71 16 25 C -0.13 -0.78 5.42 -26.73 -0.14 -0.93 16 26 C -0.12 -0.47 5.92 -26.73 -0.16 -0.63 16 27 C -0.13 -0.43 5.92 -26.73 -0.16 -0.58 16 28 C -0.12 -0.38 5.92 -26.70 -0.16 -0.54 16 29 C -0.13 -0.64 5.42 -26.70 -0.14 -0.79 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.41 6.64 8.50 -40.82 -0.35 6.30 16 34 H 0.13 1.52 7.45 -52.49 -0.39 1.13 16 35 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.04 0.94 7.20 -51.93 -0.37 0.56 16 37 H 0.05 0.96 7.49 -51.93 -0.39 0.57 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 0.56 6.49 -51.93 -0.34 0.22 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -34.40 399.10 -8.01 -42.42 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.64 Total: 3.44 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -4.20 Total: -8.48 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 2.48 Total: -58.79 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.40 -8.01 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189857710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.628 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds