Wall clock time and date at job start Wed Apr 1 2020 03:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46633 * 2 1 4 4 N 1.46506 * 109.46730 * 119.99642 * 2 1 3 5 5 C 1.39983 * 119.99892 * 275.00056 * 4 2 1 6 6 C 1.40430 * 125.97749 * 0.02562 * 5 4 2 7 7 C 1.35249 * 107.85888 * 179.97438 * 6 5 4 8 8 N 1.34952 * 107.86687 * 0.02562 * 7 6 5 9 9 C 1.46503 * 125.97335 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47080 * 124.99883 * 9 8 7 11 11 H 1.07995 * 120.00003 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99813 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99768 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00136 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47125 * 89.99951 * 14 12 10 16 16 H 1.48501 * 109.47080 * 210.00024 * 14 12 10 17 17 H 1.48505 * 109.47223 * 329.99942 * 14 12 10 18 18 N 1.31224 * 125.97690 * 179.69672 * 5 4 2 19 19 C 1.50699 * 109.46884 * 239.99631 * 2 1 3 20 20 N 1.31067 * 126.66262 * 284.94988 * 19 2 1 21 21 N 1.28840 * 107.99063 * 180.02562 * 20 19 2 22 22 N 1.28738 * 109.39684 * 359.73877 * 21 20 19 23 23 N 1.29018 * 108.81055 * 0.43627 * 22 21 20 24 24 C 1.46499 * 126.44210 * 179.83338 * 23 22 21 25 25 C 1.53000 * 109.46840 * 299.69390 * 24 23 22 26 26 C 1.53001 * 109.46886 * 180.02562 * 25 24 23 27 27 C 1.53002 * 109.46963 * 299.99499 * 26 25 24 28 28 C 1.52997 * 109.47092 * 60.00194 * 27 26 25 29 29 C 1.53002 * 109.46799 * 59.69156 * 24 23 22 30 30 H 1.08995 * 109.47363 * 300.00361 * 1 2 3 31 31 H 1.08999 * 109.47352 * 60.00456 * 1 2 3 32 32 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 33 33 H 0.96993 * 119.99765 * 95.00648 * 4 2 1 34 34 H 1.07997 * 126.07090 * 0.02562 * 6 5 4 35 35 H 1.08001 * 126.06424 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47028 * 244.99969 * 9 8 7 37 37 H 1.08998 * 109.47162 * 4.99681 * 9 8 7 38 38 H 0.97007 * 119.99520 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.47391 * 179.69059 * 24 23 22 40 40 H 1.09001 * 109.47194 * 299.99493 * 25 24 23 41 41 H 1.08992 * 109.47399 * 59.99666 * 25 24 23 42 42 H 1.09000 * 109.47437 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47508 * 59.99571 * 26 25 24 44 44 H 1.09002 * 109.47067 * 300.00341 * 27 26 25 45 45 H 1.09000 * 109.47312 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47375 * 180.02562 * 28 27 26 47 47 H 1.09002 * 109.47497 * 59.99850 * 28 27 26 48 48 H 1.09002 * 109.47075 * 299.99543 * 29 24 23 49 49 H 1.08996 * 109.47407 * 60.00500 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1519 0.0078 2.4021 6 6 1.8555 1.3652 2.6064 7 6 2.1165 1.6564 3.9012 8 7 2.5617 0.5304 4.4972 9 6 2.9594 0.3993 5.9011 10 6 2.1743 -0.7151 6.5436 11 1 1.4517 -1.2704 5.9641 12 6 2.3785 -1.0257 7.8714 13 7 1.6938 -1.9985 8.4319 14 14 3.6278 -0.0647 8.8739 15 1 2.9626 1.1026 9.5063 16 1 4.1963 -0.9419 9.9287 17 1 4.7179 0.4092 7.9836 18 7 2.5704 -0.4928 3.5406 19 6 2.0323 -0.7105 -1.2304 20 7 2.0374 -2.0043 -1.4397 21 7 2.5451 -2.2170 -2.6047 22 7 2.8589 -1.0920 -3.1462 23 7 2.5634 -0.1395 -2.3276 24 6 2.7627 1.2943 -2.5524 25 6 4.2511 1.5744 -2.7697 26 6 4.4592 3.0720 -3.0039 27 6 3.6722 3.5090 -4.2411 28 6 2.1838 3.2288 -4.0238 29 6 1.9756 1.7307 -3.7898 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1527 34 1 1.4842 2.0540 1.8622 35 1 1.9910 2.6192 4.3741 36 1 4.0242 0.1730 5.9574 37 1 2.7584 1.3340 6.4244 38 1 1.8378 -2.2172 9.3660 39 1 2.4113 1.8507 -1.6834 40 1 4.8118 1.2636 -1.8882 41 1 4.6024 1.0181 -3.6386 42 1 5.5195 3.2716 -3.1592 43 1 4.1080 3.6281 -2.1347 44 1 4.0234 2.9529 -5.1103 45 1 3.8208 4.5758 -4.4082 46 1 1.6231 3.5397 -4.9054 47 1 1.8325 3.7848 -3.1546 48 1 2.3270 1.1744 -4.6588 49 1 0.9153 1.5312 -3.6350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189857710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:37 Heat of formation + Delta-G solvation = 165.273344 kcal Electronic energy + Delta-G solvation = -30162.426935 eV Core-core repulsion = 26162.643925 eV Total energy + Delta-G solvation = -3999.783009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.37454 -41.78931 -39.80536 -38.07358 -36.00504 -35.47720 -34.04930 -32.69553 -31.85503 -31.46494 -30.94350 -30.15148 -28.63593 -25.88045 -25.81087 -24.40917 -23.70624 -23.33746 -22.52881 -21.58098 -20.86546 -20.68187 -19.03767 -18.82554 -18.11819 -17.96430 -17.42443 -16.59384 -16.30853 -16.12693 -15.50207 -15.32591 -15.27198 -15.16119 -14.87040 -14.67164 -14.46462 -14.22674 -14.00159 -13.93964 -13.72254 -13.62969 -13.46775 -13.29016 -12.99324 -12.91179 -12.70330 -12.45190 -12.42785 -12.22806 -12.20454 -12.14460 -12.09705 -11.78711 -11.52346 -11.41014 -11.39426 -11.14962 -11.04638 -10.94671 -10.83578 -9.48298 -8.57041 -8.34863 -6.44422 0.06329 0.82958 1.02875 1.35052 1.37589 1.40829 1.49931 1.74206 2.26344 2.30871 2.65043 2.68996 2.97754 3.12907 3.43888 3.47013 3.71535 3.91992 3.98755 4.04527 4.06084 4.13205 4.19454 4.24978 4.34190 4.36927 4.46655 4.49874 4.55848 4.62069 4.71421 4.78401 4.85080 4.92394 4.95036 4.95384 4.96852 5.05790 5.15501 5.16652 5.19232 5.26969 5.29294 5.33913 5.34560 5.52010 5.59344 6.04274 6.25246 6.53836 6.65154 6.66401 7.18472 7.33668 7.45049 8.82586 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002317 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.399461 B =12081.105968 C =12943.945061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.263 3.737 3 H 0.131 0.869 4 N -0.718 5.718 5 C 0.312 3.688 6 C -0.317 4.317 7 C 0.069 3.931 8 N -0.357 5.357 9 C 0.242 3.758 10 C -0.543 4.543 11 H 0.023 0.977 12 C 0.009 3.991 13 N -0.946 5.946 14 Si 0.958 3.042 15 H -0.249 1.249 16 H -0.284 1.284 17 H -0.240 1.240 18 N -0.395 5.395 19 C 0.182 3.818 20 N -0.323 5.323 21 N -0.111 5.111 22 N -0.093 5.093 23 N -0.280 5.280 24 C 0.130 3.870 25 C -0.127 4.127 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.110 4.110 29 C -0.124 4.124 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.399 0.601 34 H 0.181 0.819 35 H 0.208 0.792 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.271 0.729 39 H 0.146 0.854 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 21.459 -26.433 34.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.153 3.847 3 H 0.149 0.851 4 N -0.360 5.360 5 C 0.055 3.945 6 C -0.349 4.349 7 C -0.079 4.079 8 N -0.137 5.137 9 C 0.122 3.878 10 C -0.581 4.581 11 H 0.041 0.959 12 C -0.189 4.189 13 N -0.585 5.585 14 Si 0.779 3.221 15 H -0.173 1.173 16 H -0.210 1.210 17 H -0.164 1.164 18 N -0.227 5.227 19 C -0.097 4.097 20 N -0.173 5.173 21 N -0.104 5.104 22 N -0.078 5.078 23 N -0.083 5.083 24 C 0.031 3.969 25 C -0.165 4.165 26 C -0.148 4.148 27 C -0.162 4.162 28 C -0.148 4.148 29 C -0.162 4.162 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.233 0.767 34 H 0.199 0.801 35 H 0.225 0.775 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.164 0.836 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.602 19.299 -26.380 32.789 hybrid contribution 0.013 -0.040 0.726 0.727 sum 2.615 19.259 -25.654 32.185 Atomic orbital electron populations 1.22330 0.91920 1.03326 1.04572 1.19221 0.95064 0.94931 0.75440 0.85137 1.43431 1.76344 1.11876 1.04377 1.19429 0.96712 0.91881 0.86486 1.21215 1.21343 0.94516 0.97843 1.23203 0.97459 0.93372 0.93879 1.48374 1.50355 1.05912 1.09059 1.19730 0.95733 0.98400 0.73939 1.21281 1.22965 1.17763 0.96104 0.95898 1.25990 0.98191 0.96080 0.98643 1.70075 1.43165 1.31556 1.13702 0.85585 0.79200 0.78900 0.78460 1.17331 1.20983 1.16351 1.77439 1.32978 1.14345 0.97900 1.26356 0.99398 0.90006 0.93974 1.74918 1.18432 1.13482 1.10426 1.78635 1.13171 1.16585 1.02007 1.78704 1.18299 0.92345 1.18495 1.49067 1.37894 1.10992 1.10368 1.22608 0.99780 0.70735 1.03756 1.21912 0.92015 0.99908 1.02697 1.21514 1.01632 0.92024 0.99679 1.21628 0.94767 1.02308 0.97543 1.21530 0.96934 0.92422 1.03886 1.21937 0.99885 0.99108 0.95271 0.89638 0.88776 0.93130 0.76699 0.80138 0.77501 0.94628 0.90092 0.92035 0.83635 0.91996 0.91361 0.90543 0.89689 0.92299 0.89937 0.89929 0.89459 0.91388 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.48 71.98 0.68 -2.08 16 2 C 0.26 5.10 2.92 44.25 0.13 5.23 16 3 H 0.13 1.62 5.63 -2.39 -0.01 1.61 16 4 N -0.72 -21.15 5.28 -326.96 -1.73 -22.88 16 5 C 0.31 10.98 8.14 133.39 1.09 12.07 16 6 C -0.32 -8.63 9.92 22.11 0.22 -8.41 16 7 C 0.07 2.13 11.43 83.52 0.96 3.09 16 8 N -0.36 -15.26 3.67 -351.84 -1.29 -16.56 16 9 C 0.24 11.14 5.33 85.63 0.46 11.60 16 10 C -0.54 -31.76 9.78 25.60 0.25 -31.51 16 11 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 12 C 0.01 0.52 5.47 84.66 0.46 0.99 16 13 N -0.95 -59.40 13.96 21.45 0.30 -59.11 16 14 Si 0.96 41.09 27.47 68.60 1.88 42.97 16 15 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.24 -9.31 6.54 99.48 0.65 -8.65 16 18 N -0.39 -18.24 12.41 -54.55 -0.68 -18.92 16 19 C 0.18 4.15 6.91 138.13 0.96 5.11 16 20 N -0.32 -9.82 12.09 -50.45 -0.61 -10.43 16 21 N -0.11 -3.45 13.43 37.01 0.50 -2.96 16 22 N -0.09 -2.35 13.04 37.02 0.48 -1.87 16 23 N -0.28 -5.35 3.06 -317.82 -0.97 -6.32 16 24 C 0.13 1.31 2.90 44.99 0.13 1.44 16 25 C -0.13 -1.31 5.42 30.59 0.17 -1.14 16 26 C -0.11 -0.58 5.92 30.60 0.18 -0.39 16 27 C -0.13 -0.48 5.92 30.59 0.18 -0.30 16 28 C -0.11 -0.32 5.92 30.61 0.18 -0.14 16 29 C -0.12 -0.92 5.42 30.61 0.17 -0.75 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.40 13.46 8.50 -92.71 -0.79 12.67 16 34 H 0.18 2.99 7.45 -2.91 -0.02 2.97 16 35 H 0.21 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.04 1.64 7.20 -2.39 -0.02 1.63 16 37 H 0.08 3.13 7.49 -2.39 -0.02 3.11 16 38 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 39 H 0.15 0.66 6.49 -2.39 -0.02 0.65 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -83.73 399.10 4.21 -79.51 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.12 Total: 21.77 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.20 Total: -5.22 kcal Atomic # 7 Polarization: -135.04 SS G_CDS: -4.00 Total: -139.04 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.97 kcal Total: -83.73 4.21 -79.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189857710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.787 kcal (2) G-P(sol) polarization free energy of solvation -83.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds