Wall clock time and date at job start Wed Apr 1 2020 03:44:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86806 * 120.00067 * 2 1
4 4 H 1.48499 * 109.47135 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47206 * 300.00463 * 3 2 1
6 6 H 1.48509 * 109.46686 * 60.00339 * 3 2 1
7 7 C 1.37879 * 119.99735 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99603 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00114 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.46855 * 180.02562 * 9 7 2
11 11 N 1.46504 * 109.46808 * 179.97438 * 10 9 7
12 12 C 1.34774 * 119.99846 * 179.97438 * 11 10 9
13 13 O 1.21591 * 119.99727 * 0.02562 * 12 11 10
14 14 N 1.34774 * 120.00251 * 179.97438 * 12 11 10
15 15 C 1.46497 * 120.00299 * 179.97438 * 14 12 11
16 16 C 1.53002 * 109.47095 * 180.02562 * 15 14 12
17 17 H 1.09003 * 110.64382 * 54.30554 * 16 15 14
18 18 C 1.54590 * 110.72416 * 291.15126 * 16 15 14
19 19 C 1.53994 * 105.13855 * 219.50743 * 18 16 15
20 20 N 1.47906 * 107.05926 * 358.77320 * 19 18 16
21 21 C 1.46900 * 110.99885 * 145.84404 * 20 19 18
22 22 C 1.52999 * 109.46982 * 184.28983 * 21 20 19
23 23 C 1.50696 * 109.47381 * 185.14450 * 22 21 20
24 24 C 1.38239 * 119.99653 * 269.73164 * 23 22 21
25 25 C 1.38243 * 119.99694 * 179.74485 * 24 23 22
26 26 C 1.38232 * 119.99644 * 0.52252 * 25 24 23
27 27 C 1.38230 * 120.00407 * 359.75009 * 26 25 24
28 28 C 1.38229 * 120.00181 * 89.99688 * 23 22 21
29 29 C 1.48534 * 105.81520 * 25.33271 * 20 19 18
30 30 H 0.96999 * 120.00051 * 359.97438 * 1 2 3
31 31 H 1.08996 * 109.47113 * 59.99958 * 9 7 2
32 32 H 1.09004 * 109.46587 * 299.99478 * 9 7 2
33 33 H 1.08998 * 109.46906 * 59.99731 * 10 9 7
34 34 H 1.09001 * 109.46970 * 299.99914 * 10 9 7
35 35 H 0.97000 * 120.00189 * 359.97438 * 11 10 9
36 36 H 0.97006 * 119.99729 * 0.02562 * 14 12 11
37 37 H 1.09005 * 109.46862 * 60.00112 * 15 14 12
38 38 H 1.08997 * 109.47049 * 300.00417 * 15 14 12
39 39 H 1.09003 * 110.31393 * 338.41865 * 18 16 15
40 40 H 1.09003 * 110.31187 * 100.59104 * 18 16 15
41 41 H 1.08998 * 109.92221 * 118.12938 * 19 18 16
42 42 H 1.09005 * 109.91499 * 239.22446 * 19 18 16
43 43 H 1.08996 * 109.47042 * 304.29162 * 21 20 19
44 44 H 1.08999 * 109.46826 * 64.29307 * 21 20 19
45 45 H 1.08996 * 109.47041 * 305.14796 * 22 21 20
46 46 H 1.09004 * 109.47100 * 65.14459 * 22 21 20
47 47 H 1.08001 * 120.00354 * 359.97438 * 24 23 22
48 48 H 1.07998 * 120.00028 * 180.29410 * 25 24 23
49 49 H 1.08000 * 119.99812 * 179.77162 * 26 25 24
50 50 H 1.08001 * 120.00085 * 180.02562 * 27 26 25
51 51 H 1.08004 * 120.00258 * 0.02562 * 28 23 22
52 52 H 1.09004 * 110.66455 * 202.35625 * 29 20 19
53 53 H 1.08998 * 110.66783 * 79.22918 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8904 2.3964 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0017
10 6 2.2452 -3.6621 -0.0015
11 7 1.5127 -4.9308 -0.0020
12 6 2.1865 -6.0980 -0.0024
13 8 3.4024 -6.0980 -0.0019
14 7 1.5127 -7.2652 -0.0023
15 6 2.2451 -8.5339 -0.0033
16 6 1.2509 -9.6969 -0.0037
17 1 0.5485 -9.6017 -0.8318
18 6 0.4993 -9.7744 1.3450
19 6 0.3883 -11.2782 1.6576
20 7 1.0151 -12.0030 0.5309
21 6 1.6844 -13.2245 0.9980
22 6 2.4093 -13.8888 -0.1742
23 6 2.9893 -15.2052 0.2748
24 6 4.2715 -15.2560 0.7890
25 6 4.8017 -16.4628 1.2058
26 6 4.0536 -17.6202 1.0984
27 6 2.7736 -17.5703 0.5790
28 6 2.2413 -16.3626 0.1675
29 6 1.9914 -11.0563 -0.0664
30 1 -0.4850 0.8400 0.0004
31 1 0.6246 -2.5563 -0.8919
32 1 0.6240 -2.5574 0.8881
33 1 2.8712 -3.6047 0.8890
34 1 2.8725 -3.6039 -0.8909
35 1 0.5427 -4.9308 -0.0020
36 1 0.5426 -7.2652 -0.0024
37 1 2.8724 -8.5920 0.8862
38 1 2.8712 -8.5913 -0.8938
39 1 1.0675 -9.2669 2.1246
40 1 -0.4931 -9.3333 1.2510
41 1 0.9157 -11.5048 2.5842
42 1 -0.6601 -11.5622 1.7484
43 1 2.4060 -12.9693 1.7739
44 1 0.9427 -13.9127 1.4035
45 1 1.7039 -14.0610 -0.9871
46 1 3.2117 -13.2377 -0.5212
47 1 4.8577 -14.3524 0.8685
48 1 5.8017 -16.5018 1.6119
49 1 4.4691 -18.5636 1.4206
50 1 2.1890 -18.4745 0.4955
51 1 1.2413 -16.3237 -0.2386
52 1 2.2089 -11.3287 -1.0992
53 1 2.9066 -11.0235 0.5247
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273186348.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:44:52
Heat of formation + Delta-G solvation = -42.484544 kcal
Electronic energy + Delta-G solvation = -28274.262228 eV
Core-core repulsion = 24336.717753 eV
Total energy + Delta-G solvation = -3937.544475 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 345.216 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.10346 -40.43611 -39.75924 -36.87374 -36.17619 -34.87029 -34.63764 -32.51130
-31.75526 -31.34105 -30.34098 -28.55637 -27.09823 -25.87810 -24.05441 -23.45085
-22.92962 -22.30324 -21.92338 -21.41010 -21.12703 -19.34402 -18.40994 -17.74545
-17.43036 -17.06841 -16.68216 -16.51424 -16.41871 -16.24012 -15.85328 -15.48759
-15.25983 -15.08755 -14.91394 -14.76867 -14.31805 -14.26542 -14.22832 -13.96146
-13.81726 -13.48365 -13.19313 -13.13804 -12.93895 -12.79932 -12.50503 -12.34372
-12.24416 -12.15073 -12.09721 -11.91069 -11.77867 -11.67164 -11.63515 -11.49815
-11.46987 -11.18067 -10.59974 -10.32978 -9.81396 -9.69393 -9.59654 -9.41718
-8.23139 -6.33127 0.44947 0.50895 1.41866 1.42925 1.55950 1.77984
2.18632 2.42379 2.82826 3.00356 3.11986 3.35875 3.62323 3.73648
3.83084 3.92622 4.03207 4.16266 4.23117 4.25208 4.31220 4.32081
4.38484 4.47198 4.49614 4.53884 4.60715 4.64835 4.66656 4.70258
4.71988 4.79078 4.88228 4.94741 4.97152 5.04958 5.07434 5.18064
5.19395 5.23274 5.29603 5.33627 5.51939 5.54539 5.59031 5.61150
5.64501 5.73423 5.80462 5.88364 6.04755 6.07405 6.14624 6.18778
6.80304 7.15522 7.36387 7.62056 8.89023
Molecular weight = 345.22amu
Principal moments of inertia in cm(-1)
A = 0.034542 B = 0.001263 C = 0.001234
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 810.402279 B =22157.405676 C =22685.214666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.009 3.991
3 Si 0.964 3.036
4 H -0.266 1.266
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.546 4.546
8 H 0.058 0.942
9 C 0.024 3.976
10 C 0.160 3.840
11 N -0.733 5.733
12 C 0.697 3.303
13 O -0.643 6.643
14 N -0.730 5.730
15 C 0.152 3.848
16 C -0.091 4.091
17 H 0.100 0.900
18 C -0.126 4.126
19 C 0.036 3.964
20 N -0.521 5.521
21 C 0.059 3.941
22 C -0.072 4.072
23 C -0.090 4.090
24 C -0.132 4.132
25 C -0.130 4.130
26 C -0.135 4.135
27 C -0.127 4.127
28 C -0.127 4.127
29 C 0.044 3.956
30 H 0.266 0.734
31 H 0.009 0.991
32 H 0.009 0.991
33 H 0.042 0.958
34 H 0.043 0.957
35 H 0.407 0.593
36 H 0.411 0.589
37 H 0.052 0.948
38 H 0.058 0.942
39 H 0.064 0.936
40 H 0.085 0.915
41 H 0.043 0.957
42 H 0.086 0.914
43 H 0.032 0.968
44 H 0.077 0.923
45 H 0.083 0.917
46 H 0.073 0.927
47 H 0.125 0.875
48 H 0.134 0.866
49 H 0.137 0.863
50 H 0.138 0.862
51 H 0.132 0.868
52 H 0.093 0.907
53 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.630 -37.362 2.026 37.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.190 4.190
3 Si 0.789 3.211
4 H -0.190 1.190
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.584 4.584
8 H 0.076 0.924
9 C -0.014 4.014
10 C 0.036 3.964
11 N -0.388 5.388
12 C 0.396 3.604
13 O -0.525 6.525
14 N -0.387 5.387
15 C 0.027 3.973
16 C -0.111 4.111
17 H 0.118 0.882
18 C -0.164 4.164
19 C -0.091 4.091
20 N -0.244 5.244
21 C -0.069 4.069
22 C -0.110 4.110
23 C -0.091 4.091
24 C -0.150 4.150
25 C -0.148 4.148
26 C -0.153 4.153
27 C -0.145 4.145
28 C -0.145 4.145
29 C -0.084 4.084
30 H 0.074 0.926
31 H 0.028 0.972
32 H 0.027 0.973
33 H 0.061 0.939
34 H 0.061 0.939
35 H 0.243 0.757
36 H 0.247 0.753
37 H 0.071 0.929
38 H 0.077 0.923
39 H 0.082 0.918
40 H 0.104 0.896
41 H 0.062 0.938
42 H 0.104 0.896
43 H 0.050 0.950
44 H 0.095 0.905
45 H 0.101 0.899
46 H 0.092 0.908
47 H 0.143 0.857
48 H 0.152 0.848
49 H 0.155 0.845
50 H 0.156 0.844
51 H 0.150 0.850
52 H 0.112 0.888
53 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 1.192 -37.432 1.661 37.488
hybrid contribution 0.165 1.258 0.714 1.456
sum 1.358 -36.174 2.375 36.277
Atomic orbital electron populations
1.70060 1.07515 1.27904 1.51135 1.25841 0.95763 1.02993 0.94401
0.85413 0.79000 0.78841 0.77890 1.18990 1.20220 1.20221 1.21502
0.93601 0.91946 1.51397 0.92359 1.19129 0.94222 0.91623 0.96383
1.21064 0.94626 0.81198 0.99527 1.45208 1.10385 1.04422 1.78783
1.16187 0.85121 0.81340 0.77730 1.90861 1.13874 1.87400 1.60353
1.44909 1.10285 1.03609 1.79878 1.21151 0.94027 0.80732 1.01372
1.22213 0.96918 0.92553 0.99397 0.88198 1.22502 1.01696 0.95839
0.96391 1.22872 1.00767 0.93041 0.92453 1.64829 1.27867 1.04676
1.27072 1.22210 0.96834 0.91943 0.95906 1.20549 0.99810 0.92663
0.97971 1.19982 0.94494 0.95490 0.99087 1.21293 0.95600 0.98587
0.99540 1.21431 1.00719 0.92790 0.99826 1.21460 0.94954 0.99060
0.99811 1.21458 0.96056 0.98452 0.98567 1.21315 1.00403 0.92346
1.00422 1.23190 0.93834 0.90299 1.01125 0.92561 0.97244 0.97260
0.93945 0.93905 0.75743 0.75276 0.92933 0.92325 0.91773 0.89584
0.93831 0.89580 0.95019 0.90483 0.89872 0.90828 0.85678 0.84795
0.84510 0.84406 0.84974 0.88843 0.93476
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16
2 C 0.01 0.49 5.46 84.66 0.46 0.95 16
3 Si 0.96 43.68 29.54 68.60 2.03 45.71 16
4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16
7 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16
8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16
9 C 0.02 1.21 5.09 29.85 0.15 1.36 16
10 C 0.16 7.03 5.61 86.38 0.48 7.52 16
11 N -0.73 -25.80 5.56 -478.52 -2.66 -28.46 16
12 C 0.70 24.12 8.57 179.06 1.53 25.65 16
13 O -0.64 -28.10 16.34 -4.00 -0.07 -28.17 16
14 N -0.73 -17.15 5.44 -478.54 -2.60 -19.75 16
15 C 0.15 3.09 5.02 86.38 0.43 3.53 16
16 C -0.09 -1.27 3.09 -9.59 -0.03 -1.30 16
17 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
18 C -0.13 -1.65 6.31 31.47 0.20 -1.45 16
19 C 0.04 0.47 6.70 86.45 0.58 1.05 16
20 N -0.52 -7.00 5.35 -883.01 -4.73 -11.73 16
21 C 0.06 0.74 4.82 86.30 0.42 1.16 16
22 C -0.07 -0.85 5.02 29.85 0.15 -0.70 16
23 C -0.09 -1.18 5.13 -19.87 -0.10 -1.29 16
24 C -0.13 -1.77 9.70 22.27 0.22 -1.55 16
25 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16
26 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16
27 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16
28 C -0.13 -1.56 9.70 22.27 0.22 -1.34 16
29 C 0.04 0.58 4.81 86.65 0.42 1.00 16
30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16
31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16
32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16
33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16
34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16
35 H 0.41 11.99 8.49 -92.71 -0.79 11.21 16
36 H 0.41 7.09 8.42 -92.70 -0.78 6.31 16
37 H 0.05 1.21 8.02 -2.38 -0.02 1.19 16
38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
39 H 0.06 0.97 7.77 -2.39 -0.02 0.95 16
40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
41 H 0.04 0.57 7.67 -2.39 -0.02 0.55 16
42 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16
43 H 0.03 0.43 7.97 -2.39 -0.02 0.42 16
44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
45 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16
46 H 0.07 0.85 7.12 -2.39 -0.02 0.83 16
47 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16
48 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16
49 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16
50 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16
51 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16
52 H 0.09 1.14 7.77 -2.38 -0.02 1.12 16
53 H 0.05 0.67 7.93 -2.39 -0.02 0.65 16
Total: -1.00 -70.46 429.98 -2.39 -72.85
By element:
Atomic # 1 Polarization: 23.86 SS G_CDS: -0.68 Total: 23.18 kcal
Atomic # 6 Polarization: -5.73 SS G_CDS: 6.03 Total: 0.30 kcal
Atomic # 7 Polarization: -104.17 SS G_CDS: -9.70 Total: -113.87 kcal
Atomic # 8 Polarization: -28.10 SS G_CDS: -0.07 Total: -28.17 kcal
Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal
Total: -70.46 -2.39 -72.85 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273186348.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.362 kcal
(2) G-P(sol) polarization free energy of solvation -70.456 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.391 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds