Wall clock time and date at job start Wed Apr 1 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99861 * 2 1 4 4 H 1.48502 * 109.47389 * 270.00024 * 3 2 1 5 5 H 1.48497 * 109.47142 * 30.00406 * 3 2 1 6 6 H 1.48505 * 109.46938 * 149.99771 * 3 2 1 7 7 C 1.37873 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00243 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47347 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47227 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46806 * 304.99614 * 11 10 9 13 13 N 1.46899 * 109.47259 * 64.99564 * 11 10 9 14 14 C 1.50698 * 109.47209 * 184.99971 * 11 10 9 15 15 O 1.21283 * 119.99429 * 264.58572 * 14 11 10 16 16 N 1.34770 * 120.00200 * 84.59078 * 14 11 10 17 17 C 1.47607 * 118.74690 * 354.56567 * 16 14 11 18 18 C 1.53805 * 111.30220 * 138.32351 * 17 16 14 19 19 C 1.51331 * 109.62377 * 319.98737 * 18 17 16 20 20 N 1.46200 * 109.10789 * 92.39427 * 19 18 17 21 21 C 1.46902 * 110.99936 * 144.77175 * 20 19 18 22 22 C 1.50698 * 109.47087 * 197.07723 * 21 20 19 23 23 C 1.38232 * 120.00229 * 269.73092 * 22 21 20 24 24 C 1.38231 * 119.99793 * 179.76250 * 23 22 21 25 25 C 1.38238 * 120.00493 * 0.48921 * 24 23 22 26 26 C 1.38237 * 119.99272 * 359.78590 * 25 24 23 27 27 C 1.38236 * 119.99464 * 90.00044 * 22 21 20 28 28 C 1.41444 * 116.34391 * 272.97610 * 20 19 18 29 29 C 1.44881 * 118.74638 * 174.59722 * 16 14 11 30 30 H 0.96998 * 120.00239 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47330 * 59.99601 * 9 7 2 32 32 H 1.08999 * 109.47010 * 299.99967 * 9 7 2 33 33 H 1.08991 * 109.47567 * 59.99898 * 10 9 7 34 34 H 1.09008 * 109.46822 * 299.99516 * 10 9 7 35 35 H 1.00904 * 111.00116 * 296.04525 * 13 11 10 36 36 H 1.00897 * 111.00267 * 60.00421 * 13 11 10 37 37 H 1.09000 * 109.11620 * 258.79104 * 17 16 14 38 38 H 1.08993 * 109.11709 * 17.91695 * 17 16 14 39 39 H 1.08997 * 109.44495 * 80.00363 * 18 17 16 40 40 H 1.08997 * 109.44624 * 199.91508 * 18 17 16 41 41 H 1.08998 * 109.52730 * 332.50636 * 19 18 17 42 42 H 1.09002 * 109.53103 * 212.28715 * 19 18 17 43 43 H 1.08992 * 109.47279 * 317.08207 * 21 20 19 44 44 H 1.09004 * 109.46453 * 77.08482 * 21 20 19 45 45 H 1.07999 * 120.00408 * 359.97438 * 23 22 21 46 46 H 1.08007 * 120.00027 * 180.24956 * 24 23 22 47 47 H 1.07992 * 120.00361 * 179.76674 * 25 24 23 48 48 H 1.08004 * 119.99646 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00256 * 0.02562 * 27 22 21 50 50 H 1.08993 * 109.38675 * 183.63561 * 28 20 19 51 51 H 1.08999 * 109.38320 * 303.32432 * 28 20 19 52 52 H 1.09007 * 109.43993 * 149.65959 * 29 16 14 53 53 H 1.08999 * 109.43950 * 29.78548 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7880 -5.0073 0.8404 13 7 0.7290 -5.1182 -1.2566 14 6 2.4549 -6.1299 0.1226 15 8 2.8511 -6.6994 -0.8722 16 7 2.8861 -6.5190 1.3387 17 6 2.4827 -5.7318 2.5204 18 6 2.1069 -6.6459 3.6990 19 6 1.3290 -7.8394 3.1885 20 7 2.2578 -8.9349 2.9157 21 6 1.6478 -10.2333 3.2320 22 6 2.7258 -11.2802 3.3466 23 6 3.1117 -11.9998 2.2312 24 6 4.1039 -12.9566 2.3353 25 6 4.7032 -13.2009 3.5568 26 6 4.3133 -12.4852 4.6733 27 6 3.3248 -11.5246 4.5682 28 6 2.8484 -8.9519 1.6306 29 6 3.7286 -7.6937 1.4363 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8902 32 1 0.6248 -2.5571 0.8897 33 1 2.8720 -3.6044 0.8893 34 1 2.8719 -3.6043 -0.8906 35 1 0.0241 -4.4001 -1.3329 36 1 1.3489 -5.1022 -2.0525 37 1 3.3091 -5.0866 2.8186 38 1 1.6232 -5.1138 2.2611 39 1 3.0144 -6.9900 4.1950 40 1 1.4945 -6.0896 4.4086 41 1 0.8059 -7.5682 2.2715 42 1 0.6067 -8.1530 3.9422 43 1 1.1094 -10.1613 4.1770 44 1 0.9540 -10.5116 2.4387 45 1 2.6404 -11.8122 1.2778 46 1 4.4083 -13.5161 1.4631 47 1 5.4758 -13.9510 3.6389 48 1 4.7812 -12.6763 5.6278 49 1 3.0199 -10.9657 5.4406 50 1 3.4654 -9.8445 1.5277 51 1 2.0651 -8.9660 0.8727 52 1 4.4021 -7.5875 2.2868 53 1 4.3133 -7.7977 0.5223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424054948.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:37 Heat of formation + Delta-G solvation = -22.468876 kcal Electronic energy + Delta-G solvation = -30856.641758 eV Core-core repulsion = 26919.965227 eV Total energy + Delta-G solvation = -3936.676531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68627 -40.42193 -39.01476 -37.16401 -36.41437 -34.87270 -33.68174 -32.61320 -31.72883 -31.71280 -29.92757 -28.08712 -27.23484 -26.33099 -25.18901 -23.59971 -23.13559 -22.11872 -21.93452 -21.45487 -19.85629 -18.92729 -18.25887 -17.71553 -17.45993 -16.89554 -16.61154 -16.53962 -16.24744 -16.14149 -15.86005 -15.66322 -15.53727 -15.01216 -14.90781 -14.55482 -14.41847 -14.22247 -14.10224 -13.92005 -13.66294 -13.51273 -13.33217 -13.12404 -12.92003 -12.81964 -12.69976 -12.61131 -12.50461 -12.35225 -11.98226 -11.91071 -11.82285 -11.73608 -11.66735 -11.59313 -11.30318 -10.67183 -10.56195 -9.80213 -9.72849 -9.65565 -9.59755 -9.18190 -8.21497 -6.31667 0.46037 0.55804 1.39495 1.40157 1.50556 1.55786 1.97194 2.39794 2.73134 3.12038 3.18090 3.45645 3.70530 3.81075 3.82230 3.94789 3.98800 4.04483 4.12303 4.19532 4.20776 4.23308 4.30630 4.33450 4.40158 4.52783 4.61724 4.63329 4.64987 4.68354 4.75533 4.76938 4.82918 4.85097 4.90029 5.00007 5.06257 5.12060 5.15985 5.21465 5.28577 5.45728 5.61748 5.63546 5.65770 5.68024 5.75049 5.79698 6.01220 6.10753 6.18660 6.20612 6.25819 6.41439 6.43658 6.82983 7.14703 7.37262 8.89130 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.002091 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.973321 B =13390.308720 C =13733.040055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.034 3.966 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.107 0.893 13 N -0.831 5.831 14 C 0.520 3.480 15 O -0.574 6.574 16 N -0.600 5.600 17 C 0.095 3.905 18 C -0.119 4.119 19 C 0.071 3.929 20 N -0.551 5.551 21 C 0.102 3.898 22 C -0.087 4.087 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.105 4.105 28 C 0.071 3.929 29 C 0.120 3.880 30 H 0.264 0.736 31 H 0.001 0.999 32 H 0.004 0.996 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.353 0.647 36 H 0.343 0.657 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.021 0.979 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.033 0.967 45 H 0.114 0.886 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.134 0.866 50 H 0.091 0.909 51 H -0.001 1.001 52 H 0.098 0.902 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 -24.873 13.106 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.125 0.875 13 N -0.362 5.362 14 C 0.309 3.691 15 O -0.453 6.453 16 N -0.333 5.333 17 C -0.027 4.027 18 C -0.157 4.157 19 C -0.056 4.056 20 N -0.275 5.275 21 C -0.024 4.024 22 C -0.087 4.087 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.145 4.145 27 C -0.124 4.124 28 C -0.060 4.060 29 C -0.004 4.004 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.039 0.961 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.051 0.949 45 H 0.132 0.868 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.157 0.843 49 H 0.152 0.848 50 H 0.110 0.890 51 H 0.018 0.982 52 H 0.116 0.884 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.169 -25.688 13.174 29.521 hybrid contribution -0.046 1.939 -1.315 2.344 sum 6.123 -23.748 11.859 27.242 Atomic orbital electron populations 1.70054 1.07411 1.27749 1.51274 1.25845 0.95744 1.02892 0.94763 0.85551 0.78788 0.79045 0.78296 1.20251 1.20569 1.18991 1.21584 0.93266 0.92401 1.50893 0.92860 1.18935 0.93881 0.91830 0.95718 1.22121 0.98840 0.93755 1.01222 1.21468 0.94780 0.91636 0.95533 0.87517 1.58794 1.18422 1.55628 1.03396 1.20838 0.81131 0.83978 0.83176 1.90596 1.58792 1.58014 1.37923 1.47851 1.50264 1.28625 1.06519 1.22362 1.01221 0.93822 0.85282 1.21841 1.02248 0.95272 0.96369 1.21619 0.93395 0.90808 0.99772 1.58387 1.37670 1.03066 1.28399 1.21064 0.93200 0.86535 1.01651 1.19854 0.98246 0.96700 0.93924 1.21201 0.98417 0.97025 0.98176 1.21357 0.96683 0.98201 0.98624 1.21445 1.00230 1.00209 0.92773 1.21455 0.97434 0.96151 0.99499 1.21206 0.96238 0.97593 0.97326 1.21568 0.97181 0.98820 0.88394 1.21533 0.92683 0.83458 1.02681 0.92722 0.98086 0.97753 0.91671 0.94060 0.83250 0.84409 0.90629 0.90013 0.89531 0.87917 0.96062 0.88827 0.88239 0.94864 0.86774 0.85034 0.84449 0.84268 0.84828 0.89049 0.98247 0.88404 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.03 1.64 4.74 29.85 0.14 1.78 16 10 C -0.12 -4.78 4.62 30.59 0.14 -4.63 16 11 C 0.08 2.82 2.36 44.17 0.10 2.93 16 12 H 0.11 3.50 6.22 -2.39 -0.01 3.48 16 13 N -0.83 -29.80 8.98 -171.80 -1.54 -31.34 16 14 C 0.52 17.98 6.84 87.66 0.60 18.58 16 15 O -0.57 -23.46 15.69 -3.04 -0.05 -23.51 16 16 N -0.60 -16.32 2.18 -817.90 -1.79 -18.11 16 17 C 0.09 2.10 5.30 86.44 0.46 2.56 16 18 C -0.12 -1.92 5.79 30.32 0.18 -1.75 16 19 C 0.07 1.26 5.32 85.89 0.46 1.72 16 20 N -0.55 -10.15 3.84 -916.08 -3.52 -13.67 16 21 C 0.10 1.63 5.12 85.56 0.44 2.07 16 22 C -0.09 -1.43 4.87 -19.87 -0.10 -1.52 16 23 C -0.13 -2.21 7.87 22.27 0.18 -2.04 16 24 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 25 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 26 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 27 C -0.11 -1.52 9.70 22.27 0.22 -1.30 16 28 C 0.07 1.60 5.21 87.91 0.46 2.06 16 29 C 0.12 2.95 5.56 87.29 0.48 3.43 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.00 0.04 6.87 -2.39 -0.02 0.03 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 2.47 7.40 -2.39 -0.02 2.45 16 34 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.35 12.66 7.55 -89.69 -0.68 11.99 16 36 H 0.34 12.65 8.56 -89.70 -0.77 11.88 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.98 5.24 -2.39 -0.01 1.97 16 39 H 0.09 1.35 7.98 -2.39 -0.02 1.33 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.02 0.49 7.32 -2.39 -0.02 0.47 16 42 H 0.09 1.27 7.37 -2.39 -0.02 1.25 16 43 H 0.10 1.25 7.51 -2.39 -0.02 1.23 16 44 H 0.03 0.59 8.05 -2.38 -0.02 0.57 16 45 H 0.11 1.96 7.86 -2.91 -0.02 1.94 16 46 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 49 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 50 H 0.09 1.97 5.27 -2.39 -0.01 1.95 16 51 H 0.00 -0.02 8.12 -2.39 -0.02 -0.04 16 52 H 0.10 2.06 8.11 -2.38 -0.02 2.04 16 53 H 0.07 1.96 7.21 -2.39 -0.02 1.95 16 Total: -1.00 -67.16 410.32 0.00 -67.16 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.53 Total: 37.33 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.12 Total: -9.57 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -6.56 Total: -116.71 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.16 0.00 -67.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424054948.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.693 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds