Wall clock time and date at job start Wed Apr 1 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00415 * 2 1 4 4 H 1.48505 * 109.46997 * 270.00501 * 3 2 1 5 5 H 1.48504 * 109.46651 * 29.99904 * 3 2 1 6 6 H 1.48489 * 109.47174 * 150.00073 * 3 2 1 7 7 C 1.37883 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47329 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47206 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46646 * 304.99773 * 11 10 9 13 13 N 1.46895 * 109.46918 * 64.99988 * 11 10 9 14 14 C 1.50697 * 109.46865 * 185.00341 * 11 10 9 15 15 O 1.21284 * 119.99956 * 260.27462 * 14 11 10 16 16 N 1.34776 * 120.00529 * 79.99901 * 14 11 10 17 17 C 1.46496 * 120.00415 * 179.97438 * 16 14 11 18 18 H 1.08999 * 109.46920 * 31.02985 * 17 16 14 19 19 C 1.52996 * 109.47301 * 151.02489 * 17 16 14 20 20 N 1.46897 * 109.47465 * 185.77795 * 19 17 16 21 21 C 1.48530 * 110.99836 * 58.93586 * 20 19 17 22 22 C 1.54938 * 103.22637 * 159.72281 * 21 20 19 23 23 C 1.54592 * 102.92093 * 322.58669 * 22 21 20 24 24 C 1.47897 * 111.00181 * 176.33476 * 20 19 17 25 25 C 1.50701 * 109.47164 * 271.03150 * 17 16 14 26 26 C 1.38239 * 119.99676 * 319.72254 * 25 17 16 27 27 C 1.38238 * 119.99511 * 179.79111 * 26 25 17 28 28 C 1.38226 * 120.00067 * 0.44018 * 27 26 25 29 29 C 1.38233 * 120.00451 * 359.81455 * 28 27 26 30 30 C 1.38233 * 120.00121 * 139.99886 * 25 17 16 31 31 H 0.97000 * 119.99421 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47516 * 59.99581 * 9 7 2 33 33 H 1.08997 * 109.46988 * 300.00043 * 9 7 2 34 34 H 1.08999 * 109.47014 * 59.99989 * 10 9 7 35 35 H 1.09003 * 109.46973 * 299.99785 * 10 9 7 36 36 H 1.00900 * 110.99901 * 296.04252 * 13 11 10 37 37 H 1.00890 * 111.00103 * 60.00294 * 13 11 10 38 38 H 0.97004 * 119.99458 * 0.02562 * 16 14 11 39 39 H 1.08993 * 109.47418 * 305.78041 * 19 17 16 40 40 H 1.09002 * 109.46917 * 65.77904 * 19 17 16 41 41 H 1.09005 * 110.67028 * 278.15643 * 21 20 19 42 42 H 1.09003 * 110.66872 * 41.28933 * 21 20 19 43 43 H 1.09004 * 110.72177 * 204.22645 * 22 21 20 44 44 H 1.09004 * 110.72548 * 80.94660 * 22 21 20 45 45 H 1.09002 * 110.30975 * 263.03770 * 23 22 21 46 46 H 1.09006 * 110.30657 * 140.87542 * 23 22 21 47 47 H 1.08996 * 109.91800 * 333.50384 * 24 20 19 48 48 H 1.09003 * 109.91813 * 94.60972 * 24 20 19 49 49 H 1.08000 * 120.00179 * 0.02562 * 26 25 17 50 50 H 1.07998 * 119.99561 * 180.27478 * 27 26 25 51 51 H 1.08002 * 119.99895 * 179.83311 * 28 27 26 52 52 H 1.08002 * 120.00528 * 179.97438 * 29 28 27 53 53 H 1.08000 * 119.99751 * 359.97438 * 30 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 1 0.7883 -5.0068 0.8433 13 7 0.7280 -5.1189 -1.2537 14 6 2.4547 -6.1299 0.1251 15 8 2.7901 -6.7505 -0.8614 16 7 2.9581 -6.4586 1.3314 17 6 3.9051 -7.5698 1.4519 18 1 4.4919 -7.6479 0.5367 19 6 4.8395 -7.3173 2.6367 20 7 5.8747 -8.3589 2.6746 21 6 6.6617 -8.3731 1.4151 22 6 7.9666 -9.1035 1.8206 23 6 8.2215 -8.5852 3.2546 24 6 6.8493 -8.0984 3.7562 25 6 3.1476 -8.8535 1.6740 26 6 2.0459 -8.8704 2.5088 27 6 1.3485 -10.0470 2.7091 28 6 1.7583 -11.2086 2.0819 29 6 2.8631 -11.1930 1.2512 30 6 3.5579 -10.0154 1.0474 31 1 -0.4849 0.8401 0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6240 -2.5567 0.8903 34 1 2.8718 -3.6044 0.8905 35 1 2.8718 -3.6045 -0.8895 36 1 0.0232 -4.4008 -1.3299 37 1 1.3475 -5.1034 -2.0499 38 1 2.6926 -5.9599 2.1199 39 1 5.3106 -6.3407 2.5263 40 1 4.2659 -7.3413 3.5633 41 1 6.1354 -8.9285 0.6387 42 1 6.8766 -7.3570 1.0841 43 1 8.7863 -8.8250 1.1584 44 1 7.8198 -10.1836 1.8212 45 1 8.9328 -7.7595 3.2376 46 1 8.5916 -9.3915 3.8880 47 1 6.8898 -7.0305 3.9703 48 1 6.5630 -8.6464 4.6539 49 1 1.7278 -7.9635 3.0015 50 1 0.4852 -10.0592 3.3578 51 1 1.2150 -12.1285 2.2405 52 1 3.1835 -12.1007 0.7614 53 1 4.4211 -10.0031 0.3984 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424128965.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:56 Heat of formation + Delta-G solvation = -40.381553 kcal Electronic energy + Delta-G solvation = -30706.976928 eV Core-core repulsion = 26769.523646 eV Total energy + Delta-G solvation = -3937.453282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45086 -40.13895 -39.43686 -37.20174 -36.40119 -34.84187 -33.36439 -31.86341 -31.70269 -31.64760 -29.82801 -28.88801 -27.69177 -25.64917 -24.49277 -23.41296 -22.74628 -22.21541 -21.72557 -21.11016 -21.07387 -18.95018 -18.15298 -18.10485 -17.26991 -16.88899 -16.58072 -16.51364 -16.43715 -15.89450 -15.67606 -15.66112 -15.30120 -15.12470 -14.79023 -14.68195 -14.48133 -14.23125 -14.07331 -13.95582 -13.61044 -13.45147 -13.39588 -13.15396 -12.95881 -12.69656 -12.56769 -12.51943 -12.32859 -12.21087 -12.05420 -11.93087 -11.81759 -11.73619 -11.66908 -11.43259 -11.30982 -10.78177 -10.56776 -10.24441 -9.71695 -9.65396 -9.53595 -9.41668 -8.22113 -6.32395 0.52046 0.60497 1.38951 1.39503 1.49969 1.60859 1.99042 2.39195 2.95576 3.08066 3.11710 3.62862 3.72603 3.72924 3.78146 3.80708 3.99253 4.01843 4.12404 4.15460 4.23076 4.24065 4.26695 4.31645 4.33752 4.50835 4.61224 4.65805 4.66698 4.72839 4.75151 4.81752 4.88249 4.91455 4.97070 5.06350 5.08226 5.15101 5.19578 5.20435 5.30398 5.35691 5.46112 5.64198 5.65273 5.69203 5.77415 5.80262 5.88526 5.99274 6.06723 6.19944 6.20670 6.46675 6.50124 6.83243 7.21857 7.36737 8.88672 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010575 B = 0.002667 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.189889 B =10495.382631 C =12244.855041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.119 4.119 11 C 0.082 3.918 12 H 0.109 0.891 13 N -0.831 5.831 14 C 0.533 3.467 15 O -0.566 6.566 16 N -0.713 5.713 17 C 0.191 3.809 18 H 0.078 0.922 19 C 0.051 3.949 20 N -0.512 5.512 21 C 0.025 3.975 22 C -0.119 4.119 23 C -0.127 4.127 24 C 0.034 3.966 25 C -0.084 4.084 26 C -0.121 4.121 27 C -0.130 4.130 28 C -0.130 4.130 29 C -0.129 4.129 30 C -0.107 4.107 31 H 0.264 0.736 32 H 0.001 0.999 33 H 0.003 0.997 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.353 0.647 37 H 0.343 0.657 38 H 0.413 0.587 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.125 0.875 50 H 0.136 0.864 51 H 0.139 0.861 52 H 0.136 0.864 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.195 -22.055 9.599 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.033 4.033 12 H 0.127 0.873 13 N -0.362 5.362 14 C 0.320 3.680 15 O -0.444 6.444 16 N -0.366 5.366 17 C 0.086 3.914 18 H 0.096 0.904 19 C -0.078 4.078 20 N -0.236 5.236 21 C -0.103 4.103 22 C -0.157 4.157 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.085 4.085 26 C -0.139 4.139 27 C -0.148 4.148 28 C -0.148 4.148 29 C -0.147 4.147 30 C -0.125 4.125 31 H 0.073 0.927 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.250 0.750 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.142 0.858 50 H 0.154 0.846 51 H 0.157 0.843 52 H 0.154 0.846 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.784 -23.579 9.272 27.943 hybrid contribution 0.677 3.143 -0.242 3.225 sum 12.461 -20.436 9.030 25.582 Atomic orbital electron populations 1.70063 1.07486 1.27755 1.51344 1.25862 0.95720 1.02952 0.94770 0.85552 0.78783 0.79022 0.78330 1.20174 1.20669 1.18921 1.21618 0.93340 0.92455 1.50836 0.92713 1.18961 0.94018 0.91969 0.95722 1.22122 0.98750 0.93639 1.01395 1.21399 0.94719 0.91235 0.95930 0.87308 1.58742 1.18418 1.55674 1.03365 1.20687 0.80674 0.83803 0.82869 1.90623 1.60813 1.54632 1.38352 1.45813 1.46498 1.34533 1.09729 1.19700 0.89022 0.83478 0.99185 0.90388 1.22412 0.93946 0.93445 0.97984 1.64729 1.11343 1.43777 1.03763 1.23354 0.94730 0.99226 0.92964 1.22458 0.96087 1.00655 0.96491 1.22387 0.96069 1.01483 0.96570 1.22923 0.91553 0.99777 0.95138 1.19996 0.96384 0.94746 0.97388 1.21065 0.95502 0.98721 0.98599 1.21366 1.00249 0.92805 1.00404 1.21407 0.97155 0.98947 0.97274 1.21345 0.96102 0.98217 0.99029 1.21013 0.99631 0.92755 0.99132 0.92733 0.98043 0.97882 0.91453 0.93807 0.83241 0.84371 0.75023 0.93573 0.88914 0.90663 0.94386 0.90161 0.90567 0.90950 0.89947 0.93593 0.89816 0.85752 0.84571 0.84277 0.84609 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 13.29 21.45 0.28 -53.84 16 2 C 0.01 0.30 5.46 84.66 0.46 0.77 16 3 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -29.66 9.11 25.60 0.23 -29.43 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.48 4.74 29.85 0.14 1.62 16 10 C -0.12 -4.57 4.78 30.60 0.15 -4.43 16 11 C 0.08 2.75 3.21 44.17 0.14 2.89 16 12 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 13 N -0.83 -29.02 8.94 -171.81 -1.54 -30.56 16 14 C 0.53 17.26 7.07 87.66 0.62 17.88 16 15 O -0.57 -22.17 15.85 -3.04 -0.05 -22.21 16 16 N -0.71 -17.63 4.29 -446.11 -1.91 -19.54 16 17 C 0.19 4.46 2.15 44.25 0.10 4.56 16 18 H 0.08 2.17 5.78 -2.39 -0.01 2.15 16 19 C 0.05 0.96 4.40 86.30 0.38 1.34 16 20 N -0.51 -9.15 5.08 -883.05 -4.49 -13.64 16 21 C 0.02 0.44 5.37 86.65 0.46 0.91 16 22 C -0.12 -1.60 7.06 31.80 0.22 -1.38 16 23 C -0.13 -1.53 6.93 31.47 0.22 -1.31 16 24 C 0.03 0.49 6.70 86.45 0.58 1.07 16 25 C -0.08 -2.01 4.70 -19.87 -0.09 -2.10 16 26 C -0.12 -2.69 9.31 22.27 0.21 -2.48 16 27 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 28 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 29 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 30 C -0.11 -2.51 9.66 22.27 0.22 -2.30 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.35 12.44 7.55 -89.69 -0.68 11.77 16 37 H 0.34 12.27 8.58 -89.70 -0.77 11.50 16 38 H 0.41 8.19 8.64 -92.71 -0.80 7.39 16 39 H 0.05 0.88 7.98 -2.39 -0.02 0.86 16 40 H 0.09 1.56 8.13 -2.39 -0.02 1.55 16 41 H 0.08 1.45 6.15 -2.38 -0.01 1.44 16 42 H 0.04 0.73 8.01 -2.39 -0.02 0.72 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.05 0.67 7.68 -2.39 -0.02 0.65 16 48 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.12 2.43 7.72 -2.91 -0.02 2.41 16 50 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 51 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 52 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 53 H 0.12 2.61 6.67 -2.91 -0.02 2.59 16 Total: -1.00 -67.53 422.34 -2.30 -69.83 By element: Atomic # 1 Polarization: 45.70 SS G_CDS: -1.33 Total: 44.37 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 4.71 Total: -19.54 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -7.65 Total: -117.57 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.53 -2.30 -69.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128965.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.449 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds