Wall clock time and date at job start Wed Apr 1 2020 03:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.53114 * 109.52496 * 274.68460 * 17 16 14 19 19 C 1.53036 * 109.27987 * 182.43670 * 18 17 16 20 20 N 1.46846 * 109.52287 * 59.17964 * 19 18 17 21 21 C 1.46900 * 111.00283 * 174.15844 * 20 19 18 22 22 C 1.50703 * 109.47039 * 294.21527 * 21 20 19 23 23 C 1.38239 * 119.99490 * 269.72005 * 22 21 20 24 24 C 1.38232 * 119.99479 * 179.78854 * 23 22 21 25 25 C 1.38238 * 120.00265 * 0.44813 * 24 23 22 26 26 C 1.38241 * 119.99880 * 359.80516 * 25 24 23 27 27 C 1.38226 * 120.00187 * 89.99745 * 22 21 20 28 28 C 1.46846 * 111.19978 * 298.26012 * 20 19 18 29 29 C 1.53038 * 109.52277 * 61.73994 * 28 20 19 30 30 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 32 32 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 33 33 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 35 35 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 36 36 H 1.00908 * 110.99704 * 63.95534 * 13 11 10 37 37 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 38 38 H 1.09008 * 109.51821 * 34.87836 * 17 16 14 39 39 H 1.08995 * 109.50668 * 302.38011 * 18 17 16 40 40 H 1.09004 * 109.49812 * 62.49695 * 18 17 16 41 41 H 1.08999 * 109.46252 * 299.16537 * 19 18 17 42 42 H 1.08999 * 109.45721 * 179.19441 * 19 18 17 43 43 H 1.09003 * 109.46490 * 54.21039 * 21 20 19 44 44 H 1.08995 * 109.47119 * 174.21324 * 21 20 19 45 45 H 1.07991 * 120.00321 * 0.02562 * 23 22 21 46 46 H 1.08001 * 120.00421 * 180.27966 * 24 23 22 47 47 H 1.07992 * 120.00395 * 179.83422 * 25 24 23 48 48 H 1.08000 * 119.99846 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.00042 * 359.97438 * 27 22 21 50 50 H 1.08998 * 109.46415 * 301.72629 * 28 20 19 51 51 H 1.09000 * 109.45459 * 181.74640 * 28 20 19 52 52 H 1.09001 * 109.50437 * 180.87874 * 29 28 20 53 53 H 1.09003 * 109.50460 * 60.76342 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0067 -0.8421 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1298 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9580 -6.4586 -1.3302 17 6 3.9050 -7.5698 -1.4507 18 6 5.3232 -7.0665 -1.1681 19 6 6.3144 -8.2173 -1.3549 20 7 6.2214 -8.7270 -2.7289 21 6 7.2542 -9.7396 -2.9860 22 6 8.6151 -9.0948 -2.9282 23 6 9.1801 -8.5694 -4.0753 24 6 10.4265 -7.9741 -4.0215 25 6 11.1119 -7.9124 -2.8226 26 6 10.5491 -8.4425 -1.6766 27 6 9.3008 -9.0339 -1.7296 28 6 4.8816 -9.2593 -3.0083 29 6 3.8475 -8.1394 -2.8708 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5566 0.8902 33 1 2.8718 -3.6044 0.8905 34 1 2.8718 -3.6044 -0.8895 35 1 1.3475 -5.1033 2.0511 36 1 0.0231 -4.4008 1.3311 37 1 2.6930 -5.9595 -2.1186 38 1 3.6447 -8.3495 -0.7347 39 1 5.5675 -6.2599 -1.8593 40 1 5.3813 -6.6987 -0.1436 41 1 6.0779 -9.0178 -0.6538 42 1 7.3266 -7.8586 -1.1683 43 1 7.1909 -10.5229 -2.2306 44 1 7.0994 -10.1738 -3.9736 45 1 8.6462 -8.6207 -5.0126 46 1 10.8662 -7.5596 -4.9167 47 1 12.0868 -7.4497 -2.7811 48 1 11.0848 -8.3946 -0.7400 49 1 8.8610 -9.4479 -0.8342 50 1 4.6517 -10.0548 -2.2995 51 1 4.8532 -9.6571 -4.0227 52 1 2.8515 -8.5382 -3.0630 53 1 4.0687 -7.3497 -3.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424130542.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:37 Heat of formation + Delta-G solvation = -48.433782 kcal Electronic energy + Delta-G solvation = -29826.538845 eV Core-core repulsion = 25888.736391 eV Total energy + Delta-G solvation = -3937.802453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27697 -40.46322 -39.26675 -37.13068 -36.19826 -34.83496 -33.55646 -32.05422 -31.68559 -31.65567 -31.23309 -28.33799 -26.97270 -25.59505 -24.34980 -23.74963 -23.30121 -22.30411 -21.84437 -21.26587 -20.71169 -18.85295 -18.08002 -17.69385 -17.63364 -16.69303 -16.51694 -16.37729 -16.21564 -15.99700 -15.86065 -15.55655 -15.45376 -15.08844 -14.85624 -14.64465 -14.47147 -14.26676 -14.24203 -13.94877 -13.67070 -13.46025 -13.38024 -13.15704 -12.95119 -12.90672 -12.68940 -12.54334 -12.41826 -12.21349 -12.00618 -11.82698 -11.80627 -11.69834 -11.64722 -11.52430 -11.32003 -10.70086 -10.55755 -10.06165 -9.76573 -9.68452 -9.64450 -9.26626 -8.21529 -6.31874 0.44654 0.54196 1.39632 1.41093 1.49137 1.63009 2.13793 2.39903 2.72591 3.11939 3.18126 3.65571 3.74148 3.78688 3.83341 3.93237 3.96727 4.07893 4.13452 4.18585 4.21154 4.25742 4.30070 4.37203 4.40095 4.49550 4.60980 4.63900 4.66692 4.67751 4.70283 4.81220 4.83690 4.88584 4.94682 5.03129 5.08366 5.14294 5.15185 5.19752 5.27380 5.46111 5.54312 5.59403 5.65601 5.66364 5.72063 5.80464 6.04370 6.07586 6.09325 6.17756 6.21243 6.46975 6.57000 6.83240 7.26363 7.37065 8.88981 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.002131 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.958824 B =13135.402245 C =14853.746374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.031 3.969 10 C -0.119 4.119 11 C 0.080 3.920 12 H 0.110 0.890 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.573 6.573 16 N -0.715 5.715 17 C 0.147 3.853 18 C -0.121 4.121 19 C 0.064 3.936 20 N -0.537 5.537 21 C 0.096 3.904 22 C -0.088 4.088 23 C -0.109 4.109 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.133 4.133 27 C -0.127 4.127 28 C 0.061 3.939 29 C -0.115 4.115 30 H 0.264 0.736 31 H 0.003 0.997 32 H 0.002 0.998 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.343 0.657 36 H 0.352 0.648 37 H 0.413 0.587 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.100 0.900 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.132 0.868 49 H 0.122 0.878 50 H 0.037 0.963 51 H 0.102 0.898 52 H 0.088 0.912 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.606 -22.250 -10.912 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.361 5.361 14 C 0.315 3.685 15 O -0.451 6.451 16 N -0.366 5.366 17 C 0.043 3.957 18 C -0.160 4.160 19 C -0.064 4.064 20 N -0.262 5.262 21 C -0.031 4.031 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.151 4.151 27 C -0.146 4.146 28 C -0.067 4.067 29 C -0.153 4.153 30 H 0.073 0.927 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.249 0.751 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.151 0.849 46 H 0.155 0.845 47 H 0.153 0.847 48 H 0.150 0.850 49 H 0.140 0.860 50 H 0.055 0.945 51 H 0.120 0.880 52 H 0.106 0.894 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.507 -22.931 -10.816 30.811 hybrid contribution 0.342 1.763 0.876 1.998 sum 17.849 -21.168 -9.940 29.419 Atomic orbital electron populations 1.70055 1.07450 1.27825 1.51252 1.25863 0.95749 1.02949 0.94746 0.85603 0.78392 0.78667 0.79020 1.19202 1.20751 1.19699 1.21586 0.93302 0.92503 1.50984 0.92823 1.18958 0.94006 0.91954 0.95724 1.22114 0.98744 0.93814 1.01252 1.21420 0.94808 0.91343 0.95916 0.87234 1.58770 1.18379 1.55593 1.03372 1.20705 0.80680 0.83969 0.83168 1.90613 1.61678 1.54449 1.38397 1.45975 1.46035 1.35210 1.09423 1.21016 0.87777 0.88210 0.98738 1.21880 0.94473 0.98782 1.00843 1.21990 0.99560 0.96082 0.88783 1.61954 1.03736 1.36322 1.24205 1.21056 0.87550 0.91795 1.02684 1.19879 0.95771 0.99500 0.93661 1.21235 0.95479 0.97472 0.98534 1.21453 0.95304 0.99429 0.98690 1.21449 1.00804 0.99746 0.92953 1.21385 0.95828 0.98650 0.99240 1.21241 0.95455 1.00259 0.97616 1.22090 0.86889 0.95223 1.02478 1.21831 1.00011 0.99313 0.94139 0.92715 0.97900 0.97964 0.93967 0.91645 0.84430 0.83294 0.75072 0.91711 0.91181 0.93528 0.95029 0.90409 0.93641 0.88196 0.84905 0.84521 0.84680 0.84989 0.86049 0.94495 0.87966 0.89369 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -30.15 9.11 25.60 0.23 -29.91 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.51 4.74 29.85 0.14 1.66 16 10 C -0.12 -4.70 4.78 30.59 0.15 -4.55 16 11 C 0.08 2.71 3.21 44.17 0.14 2.85 16 12 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.83 -29.05 8.94 -171.81 -1.54 -30.58 16 14 C 0.53 17.22 7.05 87.66 0.62 17.83 16 15 O -0.57 -22.45 15.91 -3.04 -0.05 -22.50 16 16 N -0.71 -17.65 5.08 -442.16 -2.25 -19.89 16 17 C 0.15 3.24 2.52 45.07 0.11 3.35 16 18 C -0.12 -2.81 5.67 30.64 0.17 -2.63 16 19 C 0.06 1.25 5.16 86.33 0.45 1.69 16 20 N -0.54 -8.52 4.65 -900.93 -4.19 -12.71 16 21 C 0.10 1.28 5.12 85.56 0.44 1.71 16 22 C -0.09 -1.37 4.89 -19.87 -0.10 -1.47 16 23 C -0.11 -1.63 9.70 22.27 0.22 -1.42 16 24 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 25 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 26 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 27 C -0.13 -2.05 7.88 22.27 0.18 -1.88 16 28 C 0.06 0.80 5.46 86.33 0.47 1.27 16 29 C -0.11 -1.72 5.57 30.65 0.17 -1.55 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.34 12.32 8.58 -89.69 -0.77 11.55 16 36 H 0.35 12.46 7.55 -89.69 -0.68 11.78 16 37 H 0.41 8.34 8.61 -92.70 -0.80 7.54 16 38 H 0.06 1.70 7.58 -2.38 -0.02 1.68 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 1.58 5.75 -2.39 -0.01 1.56 16 43 H 0.05 0.58 8.07 -2.39 -0.02 0.57 16 44 H 0.10 1.01 7.93 -2.39 -0.02 0.99 16 45 H 0.13 1.60 8.06 -2.92 -0.02 1.58 16 46 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 48 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 49 H 0.12 1.77 7.95 -2.91 -0.02 1.75 16 50 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.10 0.95 8.02 -2.39 -0.02 0.93 16 52 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 53 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.11 421.76 -2.52 -70.63 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: -1.33 Total: 41.04 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 4.52 Total: -17.42 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -7.68 Total: -117.34 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.11 -2.52 -70.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424130542.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.195 kcal (2) G-P(sol) polarization free energy of solvation -68.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds