Wall clock time and date at job start Wed Apr 1 2020 03:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99622 * 3 2 1 5 5 H 1.48490 * 109.47220 * 30.00128 * 3 2 1 6 6 H 1.48499 * 109.46982 * 150.00087 * 3 2 1 7 7 C 1.37878 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99954 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00375 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47352 * 54.99600 * 11 10 9 13 13 N 1.46905 * 109.46947 * 294.99830 * 11 10 9 14 14 C 1.50697 * 109.47213 * 174.99878 * 11 10 9 15 15 O 1.21286 * 119.99959 * 100.00048 * 14 11 10 16 16 N 1.34775 * 119.99977 * 279.99847 * 14 11 10 17 17 C 1.46501 * 119.99848 * 180.02562 * 16 14 11 18 18 H 1.09006 * 109.50551 * 325.07190 * 17 16 14 19 19 C 1.53117 * 109.50797 * 85.19719 * 17 16 14 20 20 C 1.53120 * 109.16488 * 177.59473 * 19 17 16 21 21 C 1.53034 * 109.27778 * 302.34661 * 20 19 17 22 22 N 1.46845 * 109.52371 * 59.17603 * 21 20 19 23 23 C 1.46901 * 111.00045 * 174.16182 * 22 21 20 24 24 C 1.50699 * 109.47279 * 294.21210 * 23 22 21 25 25 C 1.38232 * 119.99932 * 269.72731 * 24 23 22 26 26 C 1.38240 * 119.99996 * 179.76552 * 25 24 23 27 27 C 1.38237 * 119.99646 * 0.50179 * 26 25 24 28 28 C 1.38230 * 120.00243 * 359.75024 * 27 26 25 29 29 C 1.38232 * 120.00199 * 0.02562 * 28 27 26 30 30 C 1.46847 * 111.20186 * 298.25646 * 22 21 20 31 31 H 0.96996 * 120.00272 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 60.00289 * 9 7 2 33 33 H 1.09004 * 109.47511 * 300.00408 * 9 7 2 34 34 H 1.08997 * 109.47186 * 60.00344 * 10 9 7 35 35 H 1.09001 * 109.47049 * 300.00036 * 10 9 7 36 36 H 1.00901 * 110.99869 * 176.04901 * 13 11 10 37 37 H 1.00896 * 110.99543 * 300.00023 * 13 11 10 38 38 H 0.96989 * 120.00118 * 359.97438 * 16 14 11 39 39 H 1.09008 * 109.52117 * 297.49860 * 19 17 16 40 40 H 1.08998 * 109.52524 * 57.68365 * 19 17 16 41 41 H 1.08994 * 109.50426 * 182.40101 * 20 19 17 42 42 H 1.09007 * 109.53128 * 62.30220 * 20 19 17 43 43 H 1.09002 * 109.46099 * 299.16298 * 21 20 19 44 44 H 1.09003 * 109.46222 * 179.19537 * 21 20 19 45 45 H 1.09001 * 109.47146 * 54.20788 * 23 22 21 46 46 H 1.08994 * 109.47611 * 174.21039 * 23 22 21 47 47 H 1.07999 * 120.00212 * 359.97438 * 25 24 23 48 48 H 1.07998 * 120.00282 * 180.22986 * 26 25 24 49 49 H 1.08001 * 119.99718 * 179.72551 * 27 26 25 50 50 H 1.07996 * 119.99846 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00259 * 179.97438 * 29 28 27 52 52 H 1.09001 * 109.46587 * 301.73163 * 30 22 21 53 53 H 1.09001 * 109.46009 * 181.75310 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6364 0.0001 11 6 5.5515 -2.6364 0.0001 12 1 5.9149 -2.0469 0.8418 13 7 6.0412 -2.0512 -1.2552 14 6 6.0539 -4.0518 0.1241 15 8 6.4281 -4.6510 -0.8618 16 7 6.0875 -4.6517 1.3305 17 6 6.5764 -6.0274 1.4511 18 1 6.2898 -6.5945 0.5653 19 6 8.1019 -6.0183 1.5819 20 6 8.5991 -7.4546 1.7677 21 6 7.9307 -8.0650 3.0016 22 7 6.4727 -8.0513 2.8272 23 6 5.8039 -8.7545 3.9301 24 6 6.1623 -10.2175 3.8837 25 6 5.3793 -11.0984 3.1614 26 6 5.7108 -12.4396 3.1149 27 6 6.8194 -12.9017 3.7993 28 6 7.5995 -12.0217 4.5259 29 6 7.2707 -10.6797 4.5686 30 6 5.9665 -6.6793 2.6943 31 1 -0.4850 0.8400 -0.0004 32 1 3.8752 -0.6796 0.8895 33 1 3.8746 -0.6807 -0.8905 34 1 3.6579 -3.1505 -0.8897 35 1 3.6586 -3.1501 0.8903 36 1 7.0478 -1.9807 -1.2528 37 1 5.7177 -2.5802 -2.0511 38 1 5.7886 -4.1724 2.1190 39 1 8.5423 -5.5943 0.6794 40 1 8.3899 -5.4186 2.4453 41 1 9.6805 -7.4506 1.9040 42 1 8.3455 -8.0448 0.8870 43 1 8.1963 -7.4828 3.8839 44 1 8.2717 -9.0925 3.1284 45 1 6.1282 -8.3310 4.8807 46 1 4.7243 -8.6416 3.8315 47 1 4.5105 -10.7382 2.6306 48 1 5.1012 -13.1272 2.5475 49 1 7.0759 -13.9503 3.7666 50 1 8.4653 -12.3828 5.0609 51 1 7.8798 -9.9923 5.1366 52 1 6.2415 -6.1035 3.5780 53 1 4.8810 -6.7004 2.5978 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424136502.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:02 Heat of formation + Delta-G solvation = -46.427945 kcal Electronic energy + Delta-G solvation = -29806.173968 eV Core-core repulsion = 25868.458494 eV Total energy + Delta-G solvation = -3937.715474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.37195 -40.50412 -39.31386 -36.89507 -36.07924 -34.77664 -34.15967 -32.27493 -32.07140 -31.77664 -30.68088 -28.28531 -27.32176 -25.50585 -24.17150 -23.79236 -23.24085 -22.17572 -21.73893 -21.35542 -20.73386 -18.97017 -18.20782 -17.86210 -17.46172 -16.96480 -16.71032 -16.32648 -16.24191 -16.12807 -15.79352 -15.48813 -15.40635 -15.02423 -14.94574 -14.78379 -14.62541 -14.44394 -14.25030 -13.95358 -13.68556 -13.57090 -13.49703 -13.37639 -12.83626 -12.81914 -12.53485 -12.39825 -12.09069 -11.95364 -11.88204 -11.83669 -11.79803 -11.76313 -11.60155 -11.50423 -11.26678 -11.09145 -10.70408 -10.12810 -9.77723 -9.71377 -9.64293 -9.29499 -8.24129 -6.27265 0.43127 0.53508 1.42031 1.43297 1.52570 1.55983 2.06245 2.41971 2.77651 3.12485 3.19547 3.55827 3.65018 3.72964 3.85193 3.87899 3.97538 4.00247 4.10017 4.17188 4.18926 4.26745 4.28550 4.32159 4.36483 4.52553 4.53561 4.63947 4.64907 4.69529 4.72284 4.80357 4.83117 4.87945 4.91738 5.01706 5.13834 5.15339 5.17655 5.18780 5.28789 5.43431 5.52134 5.58632 5.65787 5.66734 5.71798 5.73970 5.98788 6.06459 6.08528 6.15470 6.33549 6.45774 6.54768 6.81441 7.17616 7.37142 8.92701 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.001917 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.726061 B =14601.589115 C =15614.082718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.002 3.998 10 C -0.079 4.079 11 C 0.085 3.915 12 H 0.122 0.878 13 N -0.819 5.819 14 C 0.490 3.510 15 O -0.582 6.582 16 N -0.712 5.712 17 C 0.150 3.850 18 H 0.062 0.938 19 C -0.122 4.122 20 C -0.109 4.109 21 C 0.054 3.946 22 N -0.542 5.542 23 C 0.097 3.903 24 C -0.087 4.087 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.128 4.128 29 C -0.120 4.120 30 C 0.057 3.943 31 H 0.264 0.736 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.348 0.652 37 H 0.345 0.655 38 H 0.414 0.586 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.120 0.880 48 H 0.132 0.868 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.132 0.868 52 H 0.058 0.942 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.860 -22.553 13.288 34.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.035 4.035 10 C -0.117 4.117 11 C -0.031 4.031 12 H 0.139 0.861 13 N -0.348 5.348 14 C 0.275 3.725 15 O -0.461 6.461 16 N -0.364 5.364 17 C 0.044 3.956 18 H 0.080 0.920 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.073 4.073 22 N -0.267 5.267 23 C -0.030 4.030 24 C -0.088 4.088 25 C -0.134 4.134 26 C -0.150 4.150 27 C -0.147 4.147 28 C -0.146 4.146 29 C -0.139 4.139 30 C -0.071 4.071 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.251 0.749 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.138 0.862 48 H 0.150 0.850 49 H 0.155 0.845 50 H 0.158 0.842 51 H 0.149 0.851 52 H 0.076 0.924 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.451 -22.447 12.374 33.424 hybrid contribution -0.008 0.283 0.453 0.534 sum 21.443 -22.165 12.827 33.401 Atomic orbital electron populations 1.70080 1.08383 1.28013 1.53129 1.26023 0.95578 1.03607 0.94276 0.85598 0.79620 0.78052 0.78944 1.19881 1.21327 1.16342 1.21570 0.92561 0.92833 1.49913 0.95383 1.19371 0.92815 0.94003 0.97312 1.21257 0.90862 0.98645 1.00978 1.21676 0.96559 0.88848 0.95985 0.86073 1.59031 1.16496 1.55977 1.03263 1.22380 0.76597 0.90543 0.82934 1.90653 1.50157 1.66981 1.38356 1.46032 1.65367 1.15071 1.09936 1.20836 0.94096 0.81922 0.98699 0.91951 1.21894 0.94404 0.97968 1.01844 1.21506 1.00443 0.94562 0.98257 1.22220 0.86553 1.01603 0.96944 1.61754 1.05651 1.14861 1.44393 1.21025 0.99589 0.89988 0.92391 1.19813 0.96042 0.94958 0.97972 1.21209 1.00039 0.93702 0.98473 1.21412 0.97973 0.95764 0.99864 1.21458 0.95219 1.00762 0.97264 1.21415 1.00352 0.93360 0.99462 1.21254 0.96653 0.96324 0.99626 1.22185 1.00056 0.88718 0.96167 0.92686 0.95653 0.95528 0.94353 0.91452 0.83830 0.84146 0.74936 0.93280 0.90568 0.89526 0.92612 0.93585 0.89804 0.92658 0.89737 0.86169 0.84979 0.84452 0.84237 0.85052 0.92411 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.00 0.07 5.47 84.66 0.46 0.54 16 3 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 7 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C 0.00 0.11 3.93 29.84 0.12 0.23 16 10 C -0.08 -2.96 4.78 30.59 0.15 -2.82 16 11 C 0.09 2.48 3.15 44.17 0.14 2.62 16 12 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 13 N -0.82 -24.24 8.44 -171.80 -1.45 -25.69 16 14 C 0.49 13.98 7.04 87.66 0.62 14.59 16 15 O -0.58 -20.55 15.91 -3.05 -0.05 -20.60 16 16 N -0.71 -15.51 5.08 -442.27 -2.25 -17.76 16 17 C 0.15 3.15 2.62 45.05 0.12 3.27 16 18 H 0.06 1.76 7.58 -2.38 -0.02 1.75 16 19 C -0.12 -2.25 5.58 30.67 0.17 -2.08 16 20 C -0.11 -1.73 6.09 30.65 0.19 -1.54 16 21 C 0.05 0.76 5.16 86.33 0.45 1.21 16 22 N -0.54 -8.88 4.65 -900.92 -4.19 -13.07 16 23 C 0.10 1.38 5.12 85.56 0.44 1.82 16 24 C -0.09 -1.33 4.89 -19.86 -0.10 -1.43 16 25 C -0.12 -1.89 9.70 22.27 0.22 -1.68 16 26 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 27 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 28 C -0.13 -1.53 10.05 22.27 0.22 -1.30 16 29 C -0.12 -1.55 7.88 22.27 0.18 -1.38 16 30 C 0.06 0.95 4.93 86.33 0.43 1.37 16 31 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 33 H 0.03 1.23 7.18 -2.38 -0.02 1.22 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.35 8.67 9.06 -89.69 -0.81 7.85 16 37 H 0.35 10.90 8.58 -89.70 -0.77 10.13 16 38 H 0.41 6.95 8.60 -92.72 -0.80 6.15 16 39 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 43 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 1.17 5.75 -2.39 -0.01 1.15 16 45 H 0.06 0.66 8.07 -2.39 -0.02 0.64 16 46 H 0.08 1.21 7.93 -2.39 -0.02 1.19 16 47 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 49 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 50 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 51 H 0.13 1.26 7.95 -2.91 -0.02 1.24 16 52 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.08 1.41 8.02 -2.39 -0.02 1.39 16 Total: -1.00 -73.48 420.11 -2.79 -76.28 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -1.52 Total: 34.48 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 4.48 Total: -20.05 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -7.58 Total: -116.77 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -73.48 -2.79 -76.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424136502.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.849 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds