Wall clock time and date at job start Wed Apr 1 2020 03:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00331 * 2 1 4 4 H 1.48507 * 109.46655 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47054 * 120.00075 * 3 2 1 6 6 H 1.48491 * 109.47475 * 240.00220 * 3 2 1 7 7 C 1.37879 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47410 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47135 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47173 * 54.99540 * 11 10 9 13 13 N 1.46906 * 109.46519 * 294.99785 * 11 10 9 14 14 C 1.50699 * 109.46889 * 175.00077 * 11 10 9 15 15 O 1.21280 * 120.00152 * 99.99943 * 14 11 10 16 16 N 1.34777 * 119.99625 * 279.99526 * 14 11 10 17 17 C 1.46502 * 119.99630 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47177 * 173.69590 * 17 16 14 19 19 H 1.08998 * 109.90583 * 58.20050 * 18 17 16 20 20 C 1.53994 * 109.91805 * 179.30683 * 18 17 16 21 21 C 1.54598 * 105.13993 * 120.57806 * 20 18 17 22 22 C 1.54937 * 102.92371 * 21.95489 * 21 20 18 23 23 N 1.47904 * 109.91542 * 297.10070 * 18 17 16 24 24 C 1.46905 * 111.00187 * 94.80215 * 23 18 17 25 25 C 1.50696 * 109.46999 * 173.63624 * 24 23 18 26 26 C 1.38233 * 120.00337 * 269.72247 * 25 24 23 27 27 C 1.38227 * 120.00091 * 179.79199 * 26 25 24 28 28 C 1.38238 * 120.00059 * 0.44380 * 27 26 25 29 29 C 1.38237 * 119.99939 * 359.81178 * 28 27 26 30 30 C 1.38231 * 119.99667 * 359.97438 * 29 28 27 31 31 H 0.97000 * 120.00390 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46776 * 300.00659 * 9 7 2 33 33 H 1.09003 * 109.46536 * 60.00084 * 9 7 2 34 34 H 1.08999 * 109.46906 * 300.00147 * 10 9 7 35 35 H 1.09002 * 109.47042 * 60.00053 * 10 9 7 36 36 H 1.00894 * 111.00033 * 299.99435 * 13 11 10 37 37 H 1.00896 * 110.99978 * 63.96145 * 13 11 10 38 38 H 0.96992 * 120.00623 * 0.02562 * 16 14 11 39 39 H 1.09006 * 109.47353 * 293.69728 * 17 16 14 40 40 H 1.09007 * 109.47138 * 53.69506 * 17 16 14 41 41 H 1.08998 * 110.30784 * 239.49360 * 20 18 17 42 42 H 1.09000 * 110.30979 * 1.66398 * 20 18 17 43 43 H 1.08999 * 110.72251 * 140.31809 * 21 20 18 44 44 H 1.09003 * 110.72198 * 263.60086 * 21 20 18 45 45 H 1.09002 * 110.66548 * 81.01701 * 22 21 20 46 46 H 1.08998 * 110.67074 * 203.98267 * 22 21 20 47 47 H 1.09002 * 109.46905 * 293.63845 * 24 23 18 48 48 H 1.08997 * 109.46752 * 53.63791 * 24 23 18 49 49 H 1.08001 * 119.99454 * 0.02562 * 26 25 24 50 50 H 1.08000 * 120.00064 * 180.27805 * 27 26 25 51 51 H 1.07996 * 119.99899 * 179.83623 * 28 27 26 52 52 H 1.07999 * 119.99471 * 180.02562 * 29 28 27 53 53 H 1.08003 * 119.99721 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 1 0.7882 -5.0068 -0.8432 13 7 0.7280 -5.1188 1.2539 14 6 2.4548 -6.1298 -0.1250 15 8 2.7863 -6.7536 0.8608 16 7 2.9580 -6.4585 -1.3313 17 6 3.9051 -7.5697 -1.4518 18 6 4.1974 -7.8328 -2.9304 19 1 4.5986 -6.9323 -3.3953 20 6 5.2058 -8.9884 -3.0683 21 6 4.4744 -10.0652 -3.9022 22 6 3.3812 -9.2504 -4.6380 23 7 2.9581 -8.2479 -3.6228 24 6 2.2978 -7.0981 -4.2551 25 6 1.1306 -7.5791 -5.0780 26 6 1.3111 -7.9060 -6.4089 27 6 0.2414 -8.3513 -7.1625 28 6 -1.0110 -8.4611 -6.5876 29 6 -1.1927 -8.1292 -5.2581 30 6 -0.1220 -7.6880 -4.5033 31 1 -0.4851 0.8400 0.0004 32 1 0.6246 -2.5571 0.8896 33 1 0.6240 -2.5567 -0.8903 34 1 2.8718 -3.6044 -0.8905 35 1 2.8718 -3.6044 0.8895 36 1 1.3476 -5.1034 2.0500 37 1 0.0232 -4.4009 1.3300 38 1 2.6932 -5.9595 -2.1197 39 1 4.8320 -7.3145 -0.9380 40 1 3.4747 -8.4644 -1.0017 41 1 6.1008 -8.6492 -3.5900 42 1 5.4661 -9.3827 -2.0860 43 1 5.1555 -10.5291 -4.6156 44 1 4.0242 -10.8160 -3.2528 45 1 3.7964 -8.7539 -5.5151 46 1 2.5469 -9.8926 -4.9200 47 1 1.9419 -6.4144 -3.4843 48 1 3.0082 -6.5806 -4.8999 49 1 2.2889 -7.8170 -6.8589 50 1 0.3834 -8.6110 -8.2012 51 1 -1.8474 -8.8065 -7.1772 52 1 -2.1711 -8.2153 -4.8089 53 1 -0.2640 -7.4283 -3.4647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424142959.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:53 Heat of formation + Delta-G solvation = -39.702571 kcal Electronic energy + Delta-G solvation = -30552.037064 eV Core-core repulsion = 26614.613225 eV Total energy + Delta-G solvation = -3937.423840 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.25421 -40.49644 -39.38389 -37.10615 -35.65256 -34.83935 -34.36581 -31.78590 -31.69305 -31.22432 -30.87756 -28.30970 -26.89346 -26.11648 -24.71999 -23.52201 -22.67495 -22.20090 -21.69964 -21.53890 -20.69403 -18.86108 -18.08577 -17.79990 -17.44740 -16.95185 -16.64242 -16.40354 -16.30994 -15.97217 -15.88339 -15.74318 -15.30684 -15.19368 -14.63665 -14.54132 -14.39543 -14.19644 -14.04265 -13.96023 -13.68086 -13.57315 -13.37037 -13.06544 -12.92076 -12.81299 -12.67331 -12.55290 -12.44384 -12.27513 -11.98446 -11.82261 -11.80785 -11.71121 -11.70258 -11.45745 -11.32308 -10.72651 -10.56138 -10.05694 -9.78664 -9.73518 -9.64190 -9.34233 -8.21543 -6.32226 0.43243 0.53401 1.39424 1.41131 1.49098 1.64327 2.16153 2.39804 2.73235 3.11951 3.13993 3.56244 3.68197 3.72767 3.75488 3.92780 3.95461 4.02811 4.11222 4.17800 4.22769 4.23906 4.25186 4.32474 4.36697 4.54330 4.61044 4.64233 4.65570 4.68225 4.76710 4.79440 4.84447 4.90902 4.97513 5.07160 5.07806 5.12439 5.17269 5.22149 5.29974 5.45421 5.47241 5.58083 5.64684 5.65355 5.70981 5.79886 5.91505 6.01156 6.06669 6.14727 6.20683 6.47549 6.51833 6.82956 7.24643 7.36848 8.89068 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.002719 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.343774 B =10294.450317 C =11719.036976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.104 0.896 13 N -0.829 5.829 14 C 0.526 3.474 15 O -0.573 6.573 16 N -0.715 5.715 17 C 0.138 3.862 18 C 0.057 3.943 19 H 0.069 0.931 20 C -0.119 4.119 21 C -0.119 4.119 22 C 0.040 3.960 23 N -0.517 5.517 24 C 0.083 3.917 25 C -0.088 4.088 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.127 4.127 29 C -0.133 4.133 30 C -0.117 4.117 31 H 0.264 0.736 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.344 0.656 37 H 0.352 0.648 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.133 0.867 50 H 0.143 0.857 51 H 0.139 0.861 52 H 0.130 0.870 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -20.989 -16.818 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.122 0.878 13 N -0.361 5.361 14 C 0.312 3.688 15 O -0.452 6.452 16 N -0.370 5.370 17 C 0.014 3.986 18 C -0.052 4.052 19 H 0.087 0.913 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.087 4.087 23 N -0.241 5.241 24 C -0.044 4.044 25 C -0.089 4.089 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.151 4.151 30 C -0.136 4.136 31 H 0.073 0.927 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.243 0.757 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.151 0.849 50 H 0.161 0.839 51 H 0.157 0.843 52 H 0.148 0.852 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.076 -22.253 -16.032 28.092 hybrid contribution 0.668 2.709 -0.284 2.804 sum 6.744 -19.545 -16.315 26.337 Atomic orbital electron populations 1.70053 1.07514 1.27845 1.51217 1.25868 0.95726 1.02978 0.94705 0.85596 0.78384 0.78600 0.79058 1.20824 1.19622 1.19142 1.21596 0.93365 0.92434 1.51050 0.92654 1.18952 0.93990 0.91992 0.95657 1.22124 0.98771 0.93701 1.01350 1.21396 0.94735 0.91526 0.95785 0.87850 1.58740 1.18392 1.55625 1.03324 1.20677 0.80891 0.84091 0.83111 1.90611 1.61521 1.54639 1.38432 1.46070 1.46728 1.35070 1.09085 1.21466 0.91971 0.88879 0.96280 1.22649 0.90409 0.99197 0.92909 0.91319 1.22373 0.97344 0.94180 1.01868 1.22479 0.96964 0.97335 0.98933 1.23271 0.97852 0.93973 0.93595 1.64803 1.22308 1.11506 1.25521 1.21324 0.94185 0.92510 0.96399 1.19749 0.94358 1.00302 0.94473 1.21236 0.99782 0.99275 0.93219 1.21419 0.92690 0.99448 1.00808 1.21455 0.98236 0.99707 0.95081 1.21395 0.99213 0.99436 0.95028 1.21175 0.93078 0.99498 0.99841 0.92716 0.97975 0.98076 0.91713 0.93615 0.84306 0.83305 0.75730 0.91548 0.92226 0.89270 0.90385 0.89037 0.91444 0.92581 0.90804 0.90818 0.92403 0.84902 0.83944 0.84290 0.85237 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.55 4.74 29.85 0.14 1.69 16 10 C -0.12 -4.75 4.78 30.59 0.15 -4.60 16 11 C 0.08 2.83 3.21 44.17 0.14 2.97 16 12 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 13 N -0.83 -29.81 8.94 -171.79 -1.54 -31.34 16 14 C 0.53 17.88 7.08 87.66 0.62 18.50 16 15 O -0.57 -23.19 16.23 -3.03 -0.05 -23.24 16 16 N -0.72 -18.85 5.32 -463.04 -2.46 -21.31 16 17 C 0.14 3.13 5.12 86.38 0.44 3.58 16 18 C 0.06 0.94 2.70 45.06 0.12 1.06 16 19 H 0.07 1.05 7.63 -2.39 -0.02 1.03 16 20 C -0.12 -1.47 6.57 31.47 0.21 -1.26 16 21 C -0.12 -1.39 7.06 31.80 0.22 -1.17 16 22 C 0.04 0.56 5.04 86.59 0.44 1.00 16 23 N -0.52 -9.16 4.95 -861.84 -4.26 -13.42 16 24 C 0.08 1.51 4.73 85.55 0.40 1.92 16 25 C -0.09 -1.70 4.72 -19.87 -0.09 -1.80 16 26 C -0.12 -1.86 8.45 22.27 0.19 -1.67 16 27 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 28 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 29 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 30 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 31 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.00 0.10 6.87 -2.39 -0.02 0.09 16 33 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.34 12.57 8.58 -89.70 -0.77 11.80 16 37 H 0.35 12.74 7.55 -89.70 -0.68 12.06 16 38 H 0.40 9.38 5.60 -92.71 -0.52 8.86 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.06 1.58 8.12 -2.38 -0.02 1.56 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 1.00 7.69 -2.39 -0.02 0.98 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 0.66 7.36 -2.39 -0.02 0.65 16 46 H 0.07 1.19 7.76 -2.39 -0.02 1.17 16 47 H 0.07 1.48 5.45 -2.39 -0.01 1.47 16 48 H 0.06 0.91 7.86 -2.39 -0.02 0.89 16 49 H 0.13 1.61 7.50 -2.91 -0.02 1.59 16 50 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 51 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 52 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 53 H 0.11 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -68.37 419.55 -2.48 -70.86 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -1.05 Total: 44.31 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 4.56 Total: -16.97 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -7.97 Total: -120.39 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.37 -2.48 -70.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142959.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.155 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds