Wall clock time and date at job start Wed Apr 1 2020 03:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47284 * 269.99838 * 3 2 1 5 5 H 1.48498 * 109.47120 * 30.00329 * 3 2 1 6 6 H 1.48500 * 109.46849 * 149.99990 * 3 2 1 7 7 C 1.37871 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00271 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00191 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46902 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47018 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47244 * 54.99692 * 12 11 10 14 14 N 1.46898 * 109.47263 * 294.99638 * 12 11 10 15 15 C 1.50703 * 109.47212 * 174.99911 * 12 11 10 16 16 O 1.21281 * 120.00427 * 99.99995 * 15 12 11 17 17 N 1.34781 * 119.99649 * 279.99888 * 15 12 11 18 18 C 1.46500 * 119.99875 * 179.97438 * 17 15 12 19 19 C 1.52999 * 109.47011 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.46897 * 180.02562 * 19 18 17 21 21 N 1.46903 * 109.47169 * 174.70843 * 20 19 18 22 22 C 1.47914 * 110.99840 * 54.82369 * 21 20 19 23 23 C 1.54605 * 102.61965 * 149.11514 * 22 21 20 24 24 C 1.51574 * 102.83388 * 334.46280 * 23 22 21 25 25 C 1.37927 * 131.55858 * 196.06437 * 24 23 22 26 26 C 1.38299 * 120.07820 * 179.65138 * 25 24 23 27 27 C 1.38299 * 119.88574 * 0.02562 * 26 25 24 28 28 C 1.37915 * 120.26770 * 0.09860 * 27 26 25 29 29 C 1.38956 * 107.95832 * 15.94619 * 24 23 22 30 30 H 0.97006 * 119.99829 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47151 * 59.99993 * 9 7 2 32 32 H 1.08999 * 109.46876 * 299.99873 * 9 7 2 33 33 H 1.08997 * 109.47350 * 59.99864 * 10 9 7 34 34 H 1.08999 * 109.46968 * 299.99566 * 10 9 7 35 35 H 1.08999 * 109.47831 * 59.99549 * 11 10 9 36 36 H 1.09005 * 109.47242 * 299.99502 * 11 10 9 37 37 H 1.00901 * 111.00046 * 299.99583 * 14 12 11 38 38 H 1.00896 * 110.99835 * 63.95653 * 14 12 11 39 39 H 0.97001 * 120.00134 * 359.97438 * 17 15 12 40 40 H 1.09005 * 109.47205 * 59.99703 * 18 17 15 41 41 H 1.08999 * 109.47334 * 299.99933 * 18 17 15 42 42 H 1.08996 * 109.47543 * 60.00363 * 19 18 17 43 43 H 1.09005 * 109.47357 * 299.99531 * 19 18 17 44 44 H 1.09000 * 109.47619 * 54.71130 * 20 19 18 45 45 H 1.08995 * 109.47333 * 294.70812 * 20 19 18 46 46 H 1.08997 * 110.77736 * 30.83640 * 22 21 20 47 47 H 1.08997 * 110.78154 * 267.39660 * 22 21 20 48 48 H 1.09007 * 110.73613 * 216.13089 * 23 22 21 49 49 H 1.08996 * 110.74197 * 92.80433 * 23 22 21 50 50 H 1.08003 * 119.95917 * 359.63408 * 25 24 23 51 51 H 1.07996 * 120.05926 * 180.02562 * 26 25 24 52 52 H 1.07998 * 119.86955 * 180.12140 * 27 26 25 53 53 H 1.07995 * 119.90627 * 180.27910 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6366 -0.0001 12 6 6.0615 -4.0790 -0.0009 13 1 5.6275 -4.6174 -0.8435 14 7 5.6719 -4.7368 1.2535 15 6 7.5635 -4.0807 -0.1235 16 8 8.2523 -4.2345 0.8627 17 7 8.1413 -3.9114 -1.3294 18 6 9.6014 -3.9125 -1.4486 19 6 9.9938 -3.7024 -2.9124 20 6 11.5187 -3.7042 -3.0370 21 7 11.8943 -3.6296 -4.4552 22 6 11.2670 -2.4604 -5.1088 23 6 12.3036 -2.0825 -6.1919 24 6 13.6000 -2.6200 -5.6194 25 6 14.9170 -2.3661 -5.9408 26 6 15.9338 -2.9956 -5.2461 27 6 15.6279 -3.8809 -4.2286 28 6 14.3126 -4.1402 -3.9049 29 6 13.2820 -3.5108 -4.6014 30 1 -0.4850 0.8401 0.0004 31 1 3.8745 -0.6808 0.8905 32 1 3.8752 -0.6796 -0.8895 33 1 3.6585 -3.1494 -0.8920 34 1 3.6579 -3.1513 0.8879 35 1 5.9142 -2.1238 0.8907 36 1 5.9156 -2.1216 -0.8892 37 1 6.0622 -4.2562 2.0502 38 1 4.6681 -4.8060 1.3289 39 1 7.5904 -3.7888 -2.1183 40 1 9.9937 -4.8681 -1.1004 41 1 10.0161 -3.1071 -0.8425 42 1 9.6017 -2.7466 -3.2601 43 1 9.5792 -4.5076 -3.5190 44 1 11.9177 -4.6212 -2.6033 45 1 11.9276 -2.8439 -2.5072 46 1 11.1355 -1.6445 -4.3981 47 1 10.3155 -2.7358 -5.5636 48 1 12.3555 -1.0007 -6.3157 49 1 12.0682 -2.5695 -7.1382 50 1 15.1545 -1.6751 -6.7361 51 1 16.9650 -2.7962 -5.4978 52 1 16.4221 -4.3708 -3.6850 53 1 14.0804 -4.8291 -3.1063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594440938.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:31 Heat of formation + Delta-G solvation = -44.639358 kcal Electronic energy + Delta-G solvation = -28730.891026 eV Core-core repulsion = 24793.253111 eV Total energy + Delta-G solvation = -3937.637915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.70709 -40.93482 -38.14099 -37.47719 -36.42089 -35.21387 -34.19699 -33.25363 -32.35782 -30.20406 -29.81779 -29.57826 -27.41101 -25.68211 -24.06971 -23.80975 -22.96697 -22.11848 -21.83878 -21.56988 -20.83175 -18.89061 -18.41898 -17.85448 -17.30509 -16.92341 -16.79986 -16.48896 -16.34282 -16.20549 -16.10036 -15.82079 -15.55688 -14.92006 -14.89333 -14.81193 -14.55440 -14.21864 -14.06555 -13.83360 -13.73540 -13.63119 -13.50111 -13.05783 -13.02949 -12.90181 -12.67092 -12.47561 -12.44029 -12.33059 -12.28404 -11.92316 -11.81005 -11.75508 -11.70800 -11.45251 -11.33438 -10.86170 -10.76771 -10.76223 -10.12313 -9.73649 -9.66222 -8.69362 -8.29657 -6.33549 0.41807 0.45303 1.34162 1.36954 1.48005 1.60179 2.08078 2.35101 2.62004 2.92056 3.05988 3.52805 3.66323 3.68713 3.73714 3.87790 3.97735 4.00299 4.03349 4.10033 4.13486 4.15176 4.25424 4.38178 4.41634 4.46145 4.50889 4.53201 4.60402 4.63447 4.70774 4.74512 4.76101 4.92919 4.96476 4.96757 5.06350 5.06587 5.10264 5.11536 5.13837 5.37563 5.42772 5.51573 5.52416 5.59400 5.62960 5.66956 5.75136 5.98364 6.07043 6.25781 6.28287 6.48220 6.54436 6.75289 7.23799 7.31453 8.86944 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.001660 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.005608 B =16864.058472 C =18448.069022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.532 4.532 8 H 0.034 0.966 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.136 4.136 12 C 0.082 3.918 13 H 0.121 0.879 14 N -0.836 5.836 15 C 0.522 3.478 16 O -0.575 6.575 17 N -0.718 5.718 18 C 0.125 3.875 19 C -0.117 4.117 20 C 0.056 3.944 21 N -0.482 5.482 22 C 0.041 3.959 23 C -0.084 4.084 24 C -0.160 4.160 25 C -0.092 4.092 26 C -0.151 4.151 27 C -0.103 4.103 28 C -0.153 4.153 29 C 0.075 3.925 30 H 0.265 0.735 31 H 0.012 0.988 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.345 0.655 38 H 0.356 0.644 39 H 0.416 0.584 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.137 0.863 51 H 0.144 0.856 52 H 0.143 0.857 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.039 -6.186 -13.970 36.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.174 1.174 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.176 4.176 12 C -0.033 4.033 13 H 0.139 0.861 14 N -0.368 5.368 15 C 0.308 3.692 16 O -0.453 6.453 17 N -0.371 5.371 18 C 0.001 3.999 19 C -0.155 4.155 20 C -0.071 4.071 21 N -0.197 5.197 22 C -0.084 4.084 23 C -0.121 4.121 24 C -0.163 4.163 25 C -0.111 4.111 26 C -0.170 4.170 27 C -0.121 4.121 28 C -0.174 4.174 29 C -0.023 4.023 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.253 0.747 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.128 0.872 48 H 0.111 0.889 49 H 0.109 0.891 50 H 0.155 0.845 51 H 0.162 0.838 52 H 0.161 0.839 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 33.500 -7.312 -13.757 36.946 hybrid contribution -0.811 2.152 0.461 2.346 sum 32.689 -5.159 -13.296 35.665 Atomic orbital electron populations 1.70073 1.08289 1.28070 1.52773 1.26024 0.95587 1.03516 0.94275 0.85666 0.79347 0.78408 0.79252 1.18872 1.21285 1.17355 1.21543 0.92291 0.93093 1.50101 0.94748 1.19541 0.93725 0.95450 0.96344 1.21328 0.93264 0.97133 1.01391 1.22265 0.96292 0.95959 1.03095 1.21406 0.90799 0.94790 0.96323 0.86136 1.58681 1.17123 1.57549 1.03467 1.20804 0.90678 0.74691 0.82982 1.90652 1.65791 1.50316 1.38581 1.45855 1.07978 1.73633 1.09634 1.21208 0.79869 1.01677 0.97193 1.21709 0.94766 1.04405 0.94662 1.22166 0.95928 1.02283 0.86717 1.60633 1.04134 1.40177 1.14710 1.23402 0.99046 0.90095 0.95868 1.21362 0.89883 1.02096 0.98792 1.20868 0.95751 1.00013 0.99619 1.20714 0.90842 0.99670 0.99825 1.21338 1.00018 0.98411 0.97225 1.21207 0.95805 0.97696 0.97391 1.20712 0.91935 1.02875 1.01875 1.19904 0.89246 0.96039 0.97105 0.92589 0.96928 0.96084 0.91979 0.93054 0.92683 0.89932 0.84118 0.82872 0.74699 0.92124 0.92473 0.89715 0.89370 0.89862 0.93693 0.91619 0.87250 0.88867 0.89072 0.84514 0.83830 0.83881 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.44 0.30 -58.81 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.95 43.56 27.47 68.60 1.88 45.44 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.53 -29.90 9.66 25.60 0.25 -29.65 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.09 -3.19 4.92 30.59 0.15 -3.04 16 11 C -0.14 -3.62 4.84 30.59 0.15 -3.48 16 12 C 0.08 1.95 3.21 44.17 0.14 2.09 16 13 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 14 N -0.84 -21.69 8.94 -171.81 -1.54 -23.23 16 15 C 0.52 13.15 7.08 87.66 0.62 13.77 16 16 O -0.57 -19.14 16.25 -3.03 -0.05 -19.19 16 17 N -0.72 -12.53 5.56 -463.04 -2.57 -15.10 16 18 C 0.12 1.97 5.67 86.38 0.49 2.46 16 19 C -0.12 -1.25 5.01 30.60 0.15 -1.09 16 20 C 0.06 0.70 4.55 86.30 0.39 1.10 16 21 N -0.48 -7.00 5.14 -688.63 -3.54 -10.54 16 22 C 0.04 0.45 5.53 86.65 0.48 0.93 16 23 C -0.08 -0.93 7.04 30.67 0.22 -0.71 16 24 C -0.16 -2.42 6.23 -19.49 -0.12 -2.54 16 25 C -0.09 -1.21 10.03 22.21 0.22 -0.98 16 26 C -0.15 -1.81 10.06 22.30 0.22 -1.59 16 27 C -0.10 -1.31 10.02 22.21 0.22 -1.09 16 28 C -0.15 -2.36 9.55 22.47 0.21 -2.14 16 29 C 0.08 1.25 5.93 38.28 0.23 1.48 16 30 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 31 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 32 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.77 6.87 -2.39 -0.02 1.76 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.35 9.45 8.58 -89.69 -0.77 8.68 16 38 H 0.36 8.72 7.55 -89.70 -0.68 8.05 16 39 H 0.42 4.95 8.47 -92.71 -0.79 4.17 16 40 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 0.75 7.07 -2.39 -0.02 0.74 16 43 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.08 1.07 7.56 -2.39 -0.02 1.05 16 45 H 0.04 0.61 8.11 -2.39 -0.02 0.59 16 46 H 0.07 0.67 7.57 -2.39 -0.02 0.66 16 47 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 51 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 52 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 53 H 0.13 1.67 7.52 -2.91 -0.02 1.65 16 Total: -1.00 -74.39 422.87 -2.27 -76.66 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -1.37 Total: 29.11 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.61 Total: -24.34 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -7.35 Total: -107.68 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.19 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -74.39 -2.27 -76.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594440938.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.019 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds