Wall clock time and date at job start Wed Apr 1 2020 03:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86789 * 120.00088 * 2 1 4 4 H 1.48503 * 109.47234 * 239.99763 * 3 2 1 5 5 H 1.48504 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47211 * 119.99922 * 3 2 1 7 7 C 1.37883 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99288 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00383 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46923 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46923 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47527 * 54.99895 * 12 11 10 14 14 N 1.46903 * 109.47027 * 294.99935 * 12 11 10 15 15 C 1.50692 * 109.47153 * 175.00232 * 12 11 10 16 16 O 1.21281 * 120.00293 * 99.99842 * 15 12 11 17 17 N 1.34779 * 119.99960 * 279.99729 * 15 12 11 18 18 C 1.46502 * 120.00068 * 179.97438 * 17 15 12 19 19 H 1.09005 * 110.62594 * 31.90696 * 18 17 15 20 20 C 1.55422 * 110.69830 * 268.62809 * 18 17 15 21 21 C 1.54908 * 101.52379 * 205.97476 * 20 18 17 22 22 N 1.47846 * 104.89238 * 37.06612 * 21 20 18 23 23 C 1.46900 * 111.00020 * 213.57993 * 22 21 20 24 24 C 1.50710 * 109.46867 * 69.87419 * 23 22 21 25 25 C 1.38237 * 120.00007 * 269.72787 * 24 23 22 26 26 C 1.38231 * 119.99970 * 179.79025 * 25 24 23 27 27 C 1.38228 * 120.00055 * 0.45979 * 26 25 24 28 28 C 1.38242 * 120.00107 * 359.77019 * 27 26 25 29 29 C 1.38227 * 119.99829 * 89.99791 * 24 23 22 30 30 C 1.47448 * 108.56553 * 335.84749 * 22 21 20 31 31 H 0.96997 * 120.00356 * 359.97438 * 1 2 3 32 32 H 1.08990 * 109.47010 * 59.99702 * 9 7 2 33 33 H 1.08999 * 109.47007 * 299.99398 * 9 7 2 34 34 H 1.09000 * 109.47092 * 59.99531 * 10 9 7 35 35 H 1.09006 * 109.47044 * 300.00022 * 10 9 7 36 36 H 1.08995 * 109.47167 * 60.00416 * 11 10 9 37 37 H 1.08999 * 109.47305 * 299.99657 * 11 10 9 38 38 H 1.00899 * 110.99962 * 176.04302 * 14 12 11 39 39 H 1.00896 * 111.00131 * 300.00169 * 14 12 11 40 40 H 0.96999 * 120.00085 * 0.02562 * 17 15 12 41 41 H 1.08998 * 111.10859 * 87.90629 * 20 18 17 42 42 H 1.08998 * 111.00401 * 323.99747 * 20 18 17 43 43 H 1.09002 * 110.37460 * 278.18013 * 21 20 18 44 44 H 1.08999 * 110.37548 * 155.95084 * 21 20 18 45 45 H 1.08994 * 109.46902 * 189.87105 * 23 22 21 46 46 H 1.08999 * 109.47217 * 309.87870 * 23 22 21 47 47 H 1.08000 * 119.99507 * 359.97438 * 25 24 23 48 48 H 1.08002 * 120.00002 * 180.25003 * 26 25 24 49 49 H 1.07997 * 120.00282 * 179.79163 * 27 26 25 50 50 H 1.07993 * 120.00042 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00471 * 359.97438 * 29 24 23 52 52 H 1.08999 * 109.88737 * 120.39623 * 30 22 21 53 53 H 1.08997 * 109.88833 * 241.42257 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9872 0.0012 12 6 2.4745 -6.1501 0.0018 13 1 3.1586 -6.0428 0.8436 14 7 3.2376 -6.1426 -1.2534 15 6 1.7251 -7.4516 0.1262 16 8 1.5128 -8.1257 -0.8593 17 7 1.2908 -7.8664 1.3328 18 6 0.5618 -9.1314 1.4537 19 1 0.9096 -9.8477 0.7093 20 6 -0.9693 -8.8977 1.3234 21 6 -1.5347 -10.1008 2.1187 22 7 -0.6015 -10.2800 3.2513 23 6 -0.4744 -11.6991 3.6092 24 6 0.2701 -12.4272 2.5197 25 6 -0.4251 -12.9983 1.4702 26 6 0.2580 -13.6624 0.4687 27 6 1.6356 -13.7637 0.5216 28 6 2.3305 -13.1967 1.5736 29 6 1.6476 -12.5288 2.5729 30 6 0.7060 -9.7103 2.8769 31 1 -0.4850 0.8400 0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5568 0.8903 34 1 2.8719 -3.6044 0.8905 35 1 2.8719 -3.6044 -0.8895 36 1 0.8533 -5.0452 -0.8886 37 1 0.8539 -5.0447 0.8914 38 1 3.9453 -6.8617 -1.2506 39 1 2.6254 -6.2407 -2.0494 40 1 1.4602 -7.3271 2.1210 41 1 -1.2849 -8.9359 0.2808 42 1 -1.2610 -7.9538 1.7836 43 1 -1.5504 -10.9945 1.4948 44 1 -2.5368 -9.8767 2.4844 45 1 0.0739 -11.7895 4.5469 46 1 -1.4667 -12.1349 3.7249 47 1 -1.5018 -12.9229 1.4313 48 1 -0.2848 -14.1050 -0.3534 49 1 2.1691 -14.2854 -0.2591 50 1 3.4067 -13.2762 1.6151 51 1 2.1904 -12.0861 3.3949 52 1 0.9783 -8.9177 3.5738 53 1 1.4670 -10.4905 2.8872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594445719.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:30 Heat of formation + Delta-G solvation = -41.166873 kcal Electronic energy + Delta-G solvation = -30106.978277 eV Core-core repulsion = 26169.490940 eV Total energy + Delta-G solvation = -3937.487337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57841 -40.74997 -39.03099 -37.13888 -35.78514 -35.22515 -33.30645 -33.10662 -32.01753 -30.70879 -29.91738 -29.26886 -26.94160 -26.11607 -24.25695 -23.57388 -22.74114 -22.04708 -21.75082 -21.58603 -21.14563 -18.47467 -18.42996 -17.85712 -17.59987 -17.17646 -16.95057 -16.46787 -16.27287 -16.11501 -15.94854 -15.62720 -15.34659 -15.12798 -14.64371 -14.54075 -14.51051 -14.26646 -14.06545 -13.90544 -13.64632 -13.33086 -13.29494 -13.10007 -12.82037 -12.63816 -12.51428 -12.46784 -12.41303 -12.39142 -12.17951 -12.15846 -11.93852 -11.82952 -11.50956 -11.37411 -11.23072 -10.95300 -10.50587 -10.15639 -9.84875 -9.77217 -9.69937 -9.34178 -8.16033 -6.26499 0.35409 0.42702 1.41781 1.45265 1.46967 1.53030 2.09371 2.44257 2.76128 3.05065 3.16774 3.49718 3.53755 3.66501 3.75965 3.81626 3.90237 4.00279 4.03830 4.08189 4.16677 4.21208 4.24109 4.28905 4.38457 4.52947 4.54491 4.63988 4.68012 4.69582 4.76146 4.82325 4.92024 4.93489 4.97214 5.04696 5.07532 5.09309 5.14563 5.27675 5.35332 5.45973 5.49692 5.53194 5.57685 5.61506 5.85295 5.87897 5.94622 5.97157 6.03285 6.05295 6.31302 6.41510 6.50193 6.91124 7.12780 7.42308 8.95516 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019793 B = 0.001898 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.281494 B =14752.526899 C =15444.174235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.083 4.083 11 C -0.093 4.093 12 C 0.088 3.912 13 H 0.124 0.876 14 N -0.818 5.818 15 C 0.488 3.512 16 O -0.583 6.583 17 N -0.706 5.706 18 C 0.131 3.869 19 H 0.069 0.931 20 C -0.141 4.141 21 C 0.039 3.961 22 N -0.513 5.513 23 C 0.085 3.915 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.131 4.131 28 C -0.131 4.131 29 C -0.119 4.119 30 C 0.028 3.972 31 H 0.262 0.738 32 H -0.017 1.017 33 H -0.008 1.008 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.349 0.651 39 H 0.345 0.655 40 H 0.416 0.584 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.134 0.866 51 H 0.136 0.864 52 H 0.093 0.907 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -31.372 8.483 32.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.028 4.028 13 H 0.142 0.858 14 N -0.347 5.347 15 C 0.273 3.727 16 O -0.463 6.463 17 N -0.358 5.358 18 C 0.024 3.976 19 H 0.087 0.913 20 C -0.180 4.180 21 C -0.089 4.089 22 N -0.235 5.235 23 C -0.042 4.042 24 C -0.129 4.129 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.150 4.150 28 C -0.149 4.149 29 C -0.137 4.137 30 C -0.100 4.100 31 H 0.071 0.929 32 H 0.001 0.999 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.253 0.747 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.148 0.852 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.152 0.848 51 H 0.154 0.846 52 H 0.111 0.889 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.466 -30.724 8.470 31.904 hybrid contribution -0.052 -0.233 -0.974 1.003 sum 1.414 -30.957 7.496 31.883 Atomic orbital electron populations 1.70098 1.07799 1.27685 1.51993 1.26009 0.95788 1.03414 0.94949 0.85514 0.78260 0.78140 0.79216 1.19377 1.20994 1.18914 1.21706 0.93569 0.92443 1.50024 0.92161 1.19048 0.94570 0.93510 0.94395 1.21280 0.97515 0.92045 1.01263 1.21444 0.96690 0.93358 1.01637 1.21626 0.95438 0.89559 0.96158 0.85788 1.59044 1.17566 1.54851 1.03200 1.22464 0.78665 0.88595 0.82980 1.90658 1.59083 1.58255 1.38337 1.46015 1.56639 1.23087 1.10055 1.22096 0.91525 0.85735 0.98211 0.91303 1.23110 0.94929 0.99788 1.00211 1.23138 0.97519 0.97086 0.91130 1.64055 1.08129 1.14775 1.36537 1.21500 1.01013 0.85850 0.95851 1.20740 0.94713 0.99266 0.98152 1.21306 1.00372 0.97801 0.94445 1.21433 0.94929 0.99455 0.99210 1.21452 0.94756 0.99925 0.98825 1.21444 1.00868 0.97920 0.94660 1.21292 0.93915 0.98938 0.99559 1.23280 0.92594 1.00743 0.93394 0.92909 0.99906 0.98938 0.92481 0.92583 0.93777 0.90910 0.83794 0.84189 0.74664 0.92155 0.90390 0.92197 0.88933 0.88440 0.88732 0.85156 0.84983 0.84984 0.84764 0.84613 0.88909 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.08 -3.37 5.04 30.59 0.15 -3.22 16 11 C -0.09 -3.03 4.84 30.59 0.15 -2.88 16 12 C 0.09 2.26 3.15 44.17 0.14 2.40 16 13 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 14 N -0.82 -21.75 8.44 -171.80 -1.45 -23.20 16 15 C 0.49 12.73 7.07 87.65 0.62 13.35 16 16 O -0.58 -19.37 15.89 -3.03 -0.05 -19.42 16 17 N -0.71 -14.19 5.18 -436.48 -2.26 -16.45 16 18 C 0.13 2.59 3.32 46.27 0.15 2.74 16 19 H 0.07 1.74 7.55 -2.38 -0.02 1.72 16 20 C -0.14 -2.83 6.78 32.08 0.22 -2.62 16 21 C 0.04 0.61 6.47 86.77 0.56 1.17 16 22 N -0.51 -7.39 5.41 -890.07 -4.82 -12.21 16 23 C 0.09 0.98 5.60 85.56 0.48 1.46 16 24 C -0.13 -1.72 4.32 -19.86 -0.09 -1.80 16 25 C -0.12 -1.72 8.18 22.27 0.18 -1.54 16 26 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 28 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 29 C -0.12 -1.59 7.73 22.27 0.17 -1.42 16 30 C 0.03 0.41 6.09 86.65 0.53 0.94 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 2.35 7.75 -2.38 -0.02 2.33 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.35 7.89 9.06 -89.69 -0.81 7.07 16 39 H 0.34 9.91 8.58 -89.70 -0.77 9.14 16 40 H 0.42 6.38 8.37 -92.71 -0.78 5.60 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 0.91 4.94 -2.39 -0.01 0.90 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 0.93 8.08 -2.39 -0.02 0.91 16 46 H 0.09 0.93 8.02 -2.39 -0.02 0.91 16 47 H 0.13 1.51 7.21 -2.91 -0.02 1.49 16 48 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 49 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 50 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 51 H 0.14 1.38 7.29 -2.91 -0.02 1.36 16 52 H 0.09 1.22 7.72 -2.39 -0.02 1.21 16 53 H 0.08 1.15 3.99 -2.39 -0.01 1.14 16 Total: -1.00 -72.22 419.41 -2.91 -75.13 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -1.43 Total: 32.72 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 4.78 Total: -25.87 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -8.24 Total: -109.44 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.22 -2.91 -75.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594445719.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.967 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds