Wall clock time and date at job start Wed Apr 1 2020 03:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99414 * 2 1 4 4 C 1.46899 * 111.00506 * 123.95711 * 2 1 3 5 5 C 1.52999 * 109.47197 * 66.04523 * 4 2 1 6 6 C 1.53001 * 109.47316 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47019 * 180.02562 * 6 5 4 8 8 C 1.46496 * 119.99885 * 269.99795 * 7 6 5 9 9 C 1.50711 * 109.47050 * 270.00032 * 8 7 6 10 10 H 1.07998 * 119.99707 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99958 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00048 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00127 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47648 * 89.99473 * 13 11 9 15 15 H 1.48505 * 109.47257 * 209.99753 * 13 11 9 16 16 H 1.48505 * 109.46831 * 329.99269 * 13 11 9 17 17 C 1.34775 * 120.00544 * 90.00114 * 7 6 5 18 18 O 1.21612 * 119.99548 * 359.97438 * 17 7 6 19 19 N 1.34768 * 120.00717 * 179.97438 * 17 7 6 20 20 C 1.40111 * 120.00427 * 179.97438 * 19 17 7 21 21 C 1.35701 * 126.45859 * 359.97438 * 20 19 17 22 22 N 1.33684 * 108.56751 * 180.02562 * 21 20 19 23 23 C 1.32428 * 109.24246 * 359.97438 * 22 21 20 24 24 C 1.40972 * 132.32281 * 179.97438 * 23 22 21 25 25 C 1.35972 * 119.34883 * 180.02562 * 24 23 22 26 26 C 1.40599 * 119.77148 * 359.73999 * 25 24 23 27 27 C 1.34846 * 120.34752 * 0.54316 * 26 25 24 28 28 N 1.36755 * 120.57420 * 359.44747 * 27 26 25 29 29 H 1.08997 * 109.46894 * 296.03511 * 1 2 3 30 30 H 1.09000 * 109.47470 * 56.04495 * 1 2 3 31 31 H 1.09009 * 109.46438 * 176.04364 * 1 2 3 32 32 H 1.09003 * 109.46718 * 183.95720 * 3 2 1 33 33 H 1.08993 * 109.47460 * 303.95257 * 3 2 1 34 34 H 1.09002 * 109.47000 * 63.96043 * 3 2 1 35 35 H 1.09001 * 109.46822 * 306.04828 * 4 2 1 36 36 H 1.08997 * 109.47084 * 186.04809 * 4 2 1 37 37 H 1.09006 * 109.46903 * 59.99923 * 5 4 2 38 38 H 1.09002 * 109.47255 * 300.00615 * 5 4 2 39 39 H 1.09001 * 109.47028 * 60.00106 * 6 5 4 40 40 H 1.08997 * 109.46760 * 300.00160 * 6 5 4 41 41 H 1.09000 * 109.47409 * 29.99911 * 8 7 6 42 42 H 1.09004 * 109.47471 * 150.00468 * 8 7 6 43 43 H 0.96998 * 120.00073 * 179.97438 * 12 11 9 44 44 H 0.97004 * 119.99816 * 0.02562 * 19 17 7 45 45 H 1.07995 * 125.71725 * 0.05588 * 21 20 19 46 46 H 1.08004 * 120.32669 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.11583 * 180.02562 * 25 24 23 48 48 H 1.07999 * 119.82712 * 180.29254 * 26 25 24 49 49 H 1.08002 * 119.71644 * 179.73468 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9956 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 6 2.1795 -3.0404 2.1553 7 7 1.8315 -4.4543 1.9947 8 6 0.5747 -4.9665 2.5462 9 6 0.8028 -5.4431 3.9577 10 1 1.7855 -5.3712 4.3997 11 6 -0.2434 -5.9699 4.6849 12 7 -0.0443 -6.3863 5.9165 13 14 -1.9434 -6.0936 3.9206 14 1 -2.0847 -7.4043 3.2370 15 1 -2.9738 -5.9760 4.9835 16 1 -2.1232 -4.9986 2.9336 17 6 2.6676 -5.2840 1.3397 18 8 3.7108 -4.8587 0.8816 19 7 2.3478 -6.5849 1.1925 20 6 3.2167 -7.4472 0.5111 21 6 4.4066 -7.1148 -0.0503 22 7 4.9358 -8.2096 -0.6058 23 6 4.1186 -9.2341 -0.4156 24 6 4.1942 -10.5909 -0.7907 25 6 3.1826 -11.4336 -0.4510 26 6 2.0801 -10.9452 0.2721 27 6 2.0162 -9.6441 0.6205 28 7 3.0256 -8.7841 0.2864 29 1 -0.3633 0.4511 0.9234 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3632 -1.0253 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7043 1.8723 0.9234 35 1 1.5612 -0.3873 2.0627 36 1 3.0798 -0.6610 1.1755 37 1 2.0660 -2.6213 0.0449 38 1 0.5474 -2.3476 0.9322 39 1 1.7448 -2.6616 3.0803 40 1 3.2637 -2.9355 2.1936 41 1 -0.1720 -4.1725 2.5471 42 1 0.2214 -5.7970 1.9350 43 1 -0.7804 -6.7566 6.4282 44 1 1.5155 -6.9240 1.5576 45 1 4.8518 -6.1309 -0.0482 46 1 5.0469 -10.9573 -1.3431 47 1 3.2279 -12.4755 -0.7316 48 1 1.2784 -11.6147 0.5465 49 1 1.1626 -9.2789 1.1722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597045596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:41 Heat of formation + Delta-G solvation = 84.933280 kcal Electronic energy + Delta-G solvation = -30386.186598 eV Core-core repulsion = 26350.627031 eV Total energy + Delta-G solvation = -4035.559567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.63178 -39.85964 -37.75874 -37.16503 -35.55076 -34.72373 -33.16937 -32.77238 -31.56418 -29.98081 -28.24401 -27.86789 -27.63909 -25.87559 -23.58140 -23.04095 -22.82168 -22.41957 -21.54958 -20.70399 -19.21262 -18.53392 -17.21173 -17.11627 -16.57396 -16.24753 -15.96548 -15.65131 -15.55589 -15.21785 -15.03211 -14.59391 -14.57110 -14.31146 -14.12508 -13.93173 -13.42158 -13.21366 -12.68617 -12.51887 -12.39731 -12.34200 -12.10957 -11.95991 -11.79949 -11.78626 -11.68572 -11.41462 -11.24314 -11.17968 -11.06656 -10.90604 -10.46262 -10.27430 -10.03317 -9.97288 -9.80081 -9.59413 -8.90715 -8.55374 -8.40543 -8.00260 -7.04976 -6.37797 -4.41732 0.84353 1.41389 2.23574 2.99635 3.00681 3.10000 3.12020 3.23982 3.67448 3.74292 3.94388 4.08950 4.29198 4.40528 4.60253 4.90464 4.94816 4.96850 5.01530 5.08428 5.13552 5.21615 5.31599 5.46750 5.56157 5.59612 5.60895 5.64340 5.73705 5.74982 5.80557 5.90898 5.92095 6.04010 6.05861 6.11444 6.18477 6.30466 6.35436 6.41489 6.52744 6.57164 6.97153 6.99212 7.04263 7.11847 7.23440 7.26174 7.39751 8.04566 8.12151 8.35934 8.69684 8.95899 9.20073 10.74459 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.007971 B = 0.003662 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3511.754252 B = 7643.406682 C =10289.791672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.132 4.132 6 C 0.141 3.859 7 N -0.598 5.598 8 C 0.210 3.790 9 C -0.548 4.548 10 H 0.081 0.919 11 C 0.078 3.922 12 N -0.884 5.884 13 Si 0.868 3.132 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.263 1.263 17 C 0.722 3.278 18 O -0.588 6.588 19 N -0.652 5.652 20 C 0.209 3.791 21 C 0.017 3.983 22 N -0.475 5.475 23 C 0.204 3.796 24 C -0.069 4.069 25 C -0.115 4.115 26 C -0.146 4.146 27 C 0.058 3.942 28 N -0.380 5.380 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.017 0.983 43 H 0.268 0.732 44 H 0.413 0.587 45 H 0.207 0.793 46 H 0.149 0.851 47 H 0.138 0.862 48 H 0.148 0.852 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 0.249 -11.277 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.171 4.171 6 C 0.016 3.984 7 N -0.331 5.331 8 C 0.089 3.911 9 C -0.587 4.587 10 H 0.099 0.901 11 C -0.127 4.127 12 N -0.521 5.521 13 Si 0.695 3.305 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.188 1.188 17 C 0.424 3.576 18 O -0.467 6.467 19 N -0.303 5.303 20 C 0.001 3.999 21 C -0.135 4.135 22 N -0.195 5.195 23 C -0.040 4.040 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.167 4.167 27 C -0.063 4.063 28 N -0.060 5.060 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.251 0.749 45 H 0.224 0.776 46 H 0.166 0.834 47 H 0.156 0.844 48 H 0.165 0.835 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.266 0.398 -12.177 12.249 hybrid contribution -2.869 0.030 1.461 3.220 sum -1.603 0.427 -10.716 10.844 Atomic orbital electron populations 1.22437 0.87548 1.02592 1.00134 1.61966 1.07983 1.13523 1.43747 1.22368 1.00828 0.88943 1.00195 1.22069 1.00315 0.93674 0.90915 1.21998 1.01322 0.93522 1.00231 1.21176 1.01149 0.78611 0.97431 1.46955 1.21771 1.08167 1.56222 1.19756 0.81960 0.94715 0.94686 1.21414 0.98598 1.42278 0.96368 0.90102 1.24901 0.98594 0.94508 0.94661 1.69888 1.32581 1.40341 1.09300 0.86978 0.84703 0.79161 0.79698 1.19942 1.20590 1.18795 1.15337 0.83445 0.79390 0.79422 1.90751 1.25069 1.75519 1.55396 1.41904 1.23234 1.07409 1.57719 1.17828 0.96084 0.79699 1.06250 1.23045 0.91449 0.99096 0.99946 1.70791 1.27746 0.97623 1.23376 1.20671 0.85703 0.96057 1.01524 1.20185 1.00249 0.87827 1.00666 1.20935 0.93563 1.00224 0.99197 1.20697 1.00568 0.93674 1.01796 1.21636 0.92611 0.90599 1.01466 1.42476 1.17317 1.06895 1.39285 0.95658 0.91754 0.90935 0.91328 0.91633 0.95801 0.94609 0.90481 0.90752 0.91980 0.90044 0.90199 0.94135 0.96574 0.92179 0.74933 0.77631 0.83383 0.84415 0.83483 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.07 0.56 0.79 16 2 N -0.55 -6.67 5.02 -251.26 -1.26 -7.93 16 3 C 0.03 0.25 9.57 60.07 0.57 0.82 16 4 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 5 C -0.13 -1.92 5.46 -26.73 -0.15 -2.06 16 6 C 0.14 2.35 5.41 -4.05 -0.02 2.33 16 7 N -0.60 -11.54 2.46 -180.80 -0.44 -11.99 16 8 C 0.21 4.31 3.99 -5.19 -0.02 4.29 16 9 C -0.55 -13.61 9.94 -34.44 -0.34 -13.95 16 10 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 11 C 0.08 1.98 5.47 -17.82 -0.10 1.89 16 12 N -0.88 -24.59 13.96 55.43 0.77 -23.82 16 13 Si 0.87 18.47 27.47 -169.99 -4.67 13.80 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 16 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 17 C 0.72 14.57 8.25 -86.93 -0.72 13.85 16 18 O -0.59 -12.55 13.08 5.27 0.07 -12.48 16 19 N -0.65 -12.32 5.31 -15.40 -0.08 -12.40 16 20 C 0.21 3.90 7.86 -151.19 -1.19 2.71 16 21 C 0.02 0.33 10.71 -17.65 -0.19 0.14 16 22 N -0.48 -8.85 11.31 -12.53 -0.14 -9.00 16 23 C 0.20 3.35 7.82 -155.77 -1.22 2.13 16 24 C -0.07 -0.84 10.10 -39.36 -0.40 -1.24 16 25 C -0.12 -1.14 10.06 -39.50 -0.40 -1.54 16 26 C -0.15 -1.52 9.98 -39.89 -0.40 -1.92 16 27 C 0.06 0.77 10.96 -16.56 -0.18 0.59 16 28 N -0.38 -6.27 2.96 -61.50 -0.18 -6.45 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 31 H 0.07 0.84 6.47 -51.92 -0.34 0.50 16 32 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.04 0.44 8.12 -51.93 -0.42 0.01 16 36 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 39 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 40 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 41 H 0.04 0.82 7.13 -51.93 -0.37 0.45 16 42 H 0.02 0.32 5.79 -51.93 -0.30 0.02 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.41 7.48 6.55 -40.82 -0.27 7.21 16 45 H 0.21 4.11 5.83 -52.49 -0.31 3.81 16 46 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 47 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 48 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 49 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -30.93 399.58 -11.49 -42.43 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.38 Total: 12.27 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -4.20 Total: 9.55 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -1.34 Total: -71.59 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.67 Total: 13.80 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.93 -11.49 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597045596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.359 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds