Wall clock time and date at job start Wed Apr 1 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99414 * 2 1 4 4 C 1.46899 * 111.00506 * 123.95711 * 2 1 3 5 5 C 1.52999 * 109.47197 * 66.04523 * 4 2 1 6 6 C 1.53001 * 109.47316 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47019 * 180.02562 * 6 5 4 8 8 C 1.46496 * 119.99885 * 269.99795 * 7 6 5 9 9 C 1.50711 * 109.47050 * 270.00032 * 8 7 6 10 10 H 1.07998 * 119.99707 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99958 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00048 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00127 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47648 * 89.99473 * 13 11 9 15 15 H 1.48505 * 109.47257 * 209.99753 * 13 11 9 16 16 H 1.48505 * 109.46831 * 329.99269 * 13 11 9 17 17 C 1.34775 * 120.00544 * 90.00114 * 7 6 5 18 18 O 1.21612 * 119.99548 * 359.97438 * 17 7 6 19 19 N 1.34768 * 120.00717 * 179.97438 * 17 7 6 20 20 C 1.40111 * 120.00427 * 179.97438 * 19 17 7 21 21 C 1.35701 * 126.45859 * 359.97438 * 20 19 17 22 22 N 1.33684 * 108.56751 * 180.02562 * 21 20 19 23 23 C 1.32428 * 109.24246 * 359.97438 * 22 21 20 24 24 C 1.40972 * 132.32281 * 179.97438 * 23 22 21 25 25 C 1.35972 * 119.34883 * 180.02562 * 24 23 22 26 26 C 1.40599 * 119.77148 * 359.73999 * 25 24 23 27 27 C 1.34846 * 120.34752 * 0.54316 * 26 25 24 28 28 N 1.36755 * 120.57420 * 359.44747 * 27 26 25 29 29 H 1.08997 * 109.46894 * 296.03511 * 1 2 3 30 30 H 1.09000 * 109.47470 * 56.04495 * 1 2 3 31 31 H 1.09009 * 109.46438 * 176.04364 * 1 2 3 32 32 H 1.09003 * 109.46718 * 183.95720 * 3 2 1 33 33 H 1.08993 * 109.47460 * 303.95257 * 3 2 1 34 34 H 1.09002 * 109.47000 * 63.96043 * 3 2 1 35 35 H 1.09001 * 109.46822 * 306.04828 * 4 2 1 36 36 H 1.08997 * 109.47084 * 186.04809 * 4 2 1 37 37 H 1.09006 * 109.46903 * 59.99923 * 5 4 2 38 38 H 1.09002 * 109.47255 * 300.00615 * 5 4 2 39 39 H 1.09001 * 109.47028 * 60.00106 * 6 5 4 40 40 H 1.08997 * 109.46760 * 300.00160 * 6 5 4 41 41 H 1.09000 * 109.47409 * 29.99911 * 8 7 6 42 42 H 1.09004 * 109.47471 * 150.00468 * 8 7 6 43 43 H 0.96998 * 120.00073 * 179.97438 * 12 11 9 44 44 H 0.97004 * 119.99816 * 0.02562 * 19 17 7 45 45 H 1.07995 * 125.71725 * 0.05588 * 21 20 19 46 46 H 1.08004 * 120.32669 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.11583 * 180.02562 * 25 24 23 48 48 H 1.07999 * 119.82712 * 180.29254 * 26 25 24 49 49 H 1.08002 * 119.71644 * 179.73468 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9956 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 6 2.1795 -3.0404 2.1553 7 7 1.8315 -4.4543 1.9947 8 6 0.5747 -4.9665 2.5462 9 6 0.8028 -5.4431 3.9577 10 1 1.7855 -5.3712 4.3997 11 6 -0.2434 -5.9699 4.6849 12 7 -0.0443 -6.3863 5.9165 13 14 -1.9434 -6.0936 3.9206 14 1 -2.0847 -7.4043 3.2370 15 1 -2.9738 -5.9760 4.9835 16 1 -2.1232 -4.9986 2.9336 17 6 2.6676 -5.2840 1.3397 18 8 3.7108 -4.8587 0.8816 19 7 2.3478 -6.5849 1.1925 20 6 3.2167 -7.4472 0.5111 21 6 4.4066 -7.1148 -0.0503 22 7 4.9358 -8.2096 -0.6058 23 6 4.1186 -9.2341 -0.4156 24 6 4.1942 -10.5909 -0.7907 25 6 3.1826 -11.4336 -0.4510 26 6 2.0801 -10.9452 0.2721 27 6 2.0162 -9.6441 0.6205 28 7 3.0256 -8.7841 0.2864 29 1 -0.3633 0.4511 0.9234 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3632 -1.0253 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7043 1.8723 0.9234 35 1 1.5612 -0.3873 2.0627 36 1 3.0798 -0.6610 1.1755 37 1 2.0660 -2.6213 0.0449 38 1 0.5474 -2.3476 0.9322 39 1 1.7448 -2.6616 3.0803 40 1 3.2637 -2.9355 2.1936 41 1 -0.1720 -4.1725 2.5471 42 1 0.2214 -5.7970 1.9350 43 1 -0.7804 -6.7566 6.4282 44 1 1.5155 -6.9240 1.5576 45 1 4.8518 -6.1309 -0.0482 46 1 5.0469 -10.9573 -1.3431 47 1 3.2279 -12.4755 -0.7316 48 1 1.2784 -11.6147 0.5465 49 1 1.1626 -9.2789 1.1722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597045596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:40 Heat of formation + Delta-G solvation = 66.521591 kcal Electronic energy + Delta-G solvation = -30386.984988 eV Core-core repulsion = 26350.627031 eV Total energy + Delta-G solvation = -4036.357958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.86489 -41.38274 -38.77537 -38.23783 -37.04878 -36.17667 -34.77266 -34.18832 -32.88445 -31.06093 -29.97589 -29.07827 -28.47526 -27.08109 -24.78822 -24.52979 -24.18216 -23.58864 -22.79938 -21.77712 -20.69704 -19.87790 -19.12591 -18.58488 -17.66536 -17.49329 -17.28514 -16.77521 -16.56661 -16.48719 -16.16989 -16.08435 -15.76807 -15.53914 -15.31823 -15.15952 -14.87485 -14.58773 -14.42575 -13.88810 -13.55712 -13.28486 -13.21297 -13.20247 -12.88055 -12.71778 -12.69168 -12.60855 -12.59529 -12.47530 -12.37163 -12.28941 -12.05637 -11.76093 -11.49573 -11.29233 -11.27587 -11.19916 -10.84191 -9.77089 -9.53122 -9.30438 -8.35461 -8.33945 -6.44649 -0.14006 0.28535 0.92186 1.34860 1.39642 1.48363 1.67271 1.91682 2.23933 2.29263 2.59003 2.75478 2.98103 3.07300 3.33794 3.56691 3.90573 3.92384 4.03360 4.11773 4.20795 4.22966 4.33606 4.39530 4.48686 4.49480 4.53371 4.61721 4.65142 4.69723 4.73274 4.77168 4.79489 4.84350 4.93473 5.01137 5.01981 5.12477 5.15993 5.25509 5.27980 5.35935 5.49761 5.62962 5.73951 5.87517 6.06551 6.09168 6.12220 6.15413 6.60885 6.71032 6.85461 7.21014 7.41332 8.81614 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.007971 B = 0.003662 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3511.754252 B = 7643.406682 C =10289.791672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.566 5.566 3 C 0.025 3.975 4 C 0.064 3.936 5 C -0.114 4.114 6 C 0.139 3.861 7 N -0.601 5.601 8 C 0.219 3.781 9 C -0.546 4.546 10 H 0.028 0.972 11 C 0.023 3.977 12 N -0.939 5.939 13 Si 0.939 3.061 14 H -0.256 1.256 15 H -0.286 1.286 16 H -0.239 1.239 17 C 0.715 3.285 18 O -0.607 6.607 19 N -0.647 5.647 20 C 0.179 3.821 21 C -0.001 4.001 22 N -0.512 5.512 23 C 0.204 3.796 24 C -0.093 4.093 25 C -0.083 4.083 26 C -0.123 4.123 27 C 0.021 3.979 28 N -0.381 5.381 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.269 0.731 44 H 0.414 0.586 45 H 0.188 0.812 46 H 0.172 0.828 47 H 0.188 0.812 48 H 0.190 0.810 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -1.786 -13.098 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.290 5.290 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.153 4.153 6 C 0.015 3.985 7 N -0.334 5.334 8 C 0.097 3.903 9 C -0.585 4.585 10 H 0.046 0.954 11 C -0.177 4.177 12 N -0.577 5.577 13 Si 0.761 3.239 14 H -0.180 1.180 15 H -0.212 1.212 16 H -0.162 1.162 17 C 0.416 3.584 18 O -0.487 6.487 19 N -0.298 5.298 20 C -0.028 4.028 21 C -0.154 4.154 22 N -0.233 5.233 23 C -0.040 4.040 24 C -0.113 4.113 25 C -0.107 4.107 26 C -0.144 4.144 27 C -0.099 4.099 28 N -0.059 5.059 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.253 0.747 45 H 0.205 0.795 46 H 0.189 0.811 47 H 0.205 0.795 48 H 0.207 0.793 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.186 -1.626 -14.020 14.164 hybrid contribution -2.031 0.438 2.038 2.910 sum -3.217 -1.188 -11.982 12.463 Atomic orbital electron populations 1.22460 0.86829 1.02394 1.01019 1.61952 1.08827 1.14838 1.43357 1.22417 1.01000 0.87793 1.01086 1.21963 1.00467 0.92389 0.91631 1.21789 1.01070 0.94478 0.97977 1.21292 1.00798 0.77808 0.98592 1.47030 1.21442 1.08990 1.55930 1.19608 0.82728 0.95625 0.92322 1.21485 0.96385 1.42234 0.98386 0.95402 1.25803 1.03288 0.93778 0.94826 1.70060 1.34165 1.42118 1.11397 0.85848 0.78250 0.80730 0.79074 1.17994 1.21206 1.16220 1.15525 0.83387 0.79927 0.79557 1.90738 1.25781 1.75999 1.56218 1.41720 1.23306 1.07023 1.57745 1.17741 0.96303 0.80986 1.07771 1.22775 0.92299 0.99033 1.01243 1.70714 1.29126 0.98123 1.25336 1.21473 0.85026 0.97214 1.00324 1.20652 1.02479 0.86044 1.02131 1.21576 0.91413 1.01952 0.95715 1.21359 1.01318 0.92665 0.99020 1.22203 0.92727 0.91637 1.03376 1.42572 1.18087 1.06217 1.39065 0.95241 0.90285 0.91774 0.91160 0.90305 0.95203 0.93954 0.90474 0.92673 0.91586 0.89907 0.91141 0.92625 0.94670 0.92138 0.74743 0.79507 0.81052 0.79497 0.79275 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.32 127.69 1.19 1.62 16 2 N -0.57 -13.20 5.02 -948.84 -4.76 -17.96 16 3 C 0.02 0.45 9.57 127.69 1.22 1.68 16 4 C 0.06 1.60 4.96 86.30 0.43 2.02 16 5 C -0.11 -3.36 5.46 30.59 0.17 -3.19 16 6 C 0.14 4.80 5.41 86.38 0.47 5.27 16 7 N -0.60 -23.93 2.46 -844.18 -2.07 -26.01 16 8 C 0.22 8.94 3.99 85.64 0.34 9.28 16 9 C -0.55 -27.88 9.94 25.60 0.25 -27.62 16 10 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 11 C 0.02 1.17 5.47 84.65 0.46 1.63 16 12 N -0.94 -53.67 13.96 21.45 0.30 -53.37 16 13 Si 0.94 37.01 27.47 68.60 1.88 38.90 16 14 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 15 H -0.29 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.24 -8.44 6.54 99.48 0.65 -7.79 16 17 C 0.71 30.32 8.25 179.06 1.48 31.80 16 18 O -0.61 -27.72 13.08 -4.07 -0.05 -27.78 16 19 N -0.65 -25.51 5.31 -320.88 -1.70 -27.21 16 20 C 0.18 7.01 7.86 130.49 1.03 8.03 16 21 C 0.00 -0.06 10.71 83.82 0.90 0.84 16 22 N -0.51 -19.93 11.31 -193.55 -2.19 -22.12 16 23 C 0.20 6.66 7.82 134.02 1.05 7.70 16 24 C -0.09 -2.01 10.10 22.41 0.23 -1.78 16 25 C -0.08 -1.21 10.06 22.32 0.22 -0.98 16 26 C -0.12 -1.99 9.98 22.07 0.22 -1.77 16 27 C 0.02 0.50 10.96 83.15 0.91 1.41 16 28 N -0.38 -12.54 2.96 -348.48 -1.03 -13.58 16 29 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 31 H 0.06 1.40 6.47 -2.38 -0.02 1.39 16 32 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 33 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 34 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 36 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 37 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.07 1.89 6.55 -2.39 -0.02 1.87 16 39 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 40 H 0.07 2.55 7.42 -2.39 -0.02 2.54 16 41 H 0.06 2.14 7.13 -2.39 -0.02 2.12 16 42 H 0.04 1.33 5.79 -2.38 -0.01 1.32 16 43 H 0.27 14.37 8.31 -92.71 -0.77 13.59 16 44 H 0.41 15.33 6.55 -92.70 -0.61 14.73 16 45 H 0.19 8.26 5.83 -2.91 -0.02 8.24 16 46 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 47 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 48 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 49 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -72.98 399.58 1.23 -71.75 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: 0.30 Total: 41.44 kcal Atomic # 6 Polarization: 25.37 SS G_CDS: 10.56 Total: 35.93 kcal Atomic # 7 Polarization: -148.78 SS G_CDS: -11.46 Total: -160.25 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 1.88 Total: 38.90 kcal Total: -72.98 1.23 -71.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597045596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.273 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds