Wall clock time and date at job start Wed Apr 1 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99686 * 2 1 4 4 C 1.53000 * 109.47047 * 184.68123 * 3 2 1 5 5 N 1.46903 * 109.47138 * 66.51223 * 4 3 2 6 6 C 1.46894 * 110.99861 * 286.87230 * 5 4 3 7 7 C 1.50702 * 109.47406 * 302.88616 * 6 5 4 8 8 H 1.08001 * 119.99849 * 4.10769 * 7 6 5 9 9 C 1.37875 * 120.00082 * 184.11701 * 7 6 5 10 10 N 1.31509 * 120.00060 * 5.13511 * 9 7 6 11 11 Si 1.86802 * 120.00002 * 185.13056 * 9 7 6 12 12 H 1.48503 * 109.46990 * 5.00908 * 11 9 7 13 13 H 1.48504 * 109.46618 * 125.00292 * 11 9 7 14 14 H 1.48496 * 109.47289 * 245.00496 * 11 9 7 15 15 C 1.38488 * 110.99653 * 162.91793 * 5 4 3 16 16 N 1.31292 * 126.36079 * 18.20660 * 15 5 4 17 17 N 1.28502 * 110.15763 * 179.97438 * 16 15 5 18 18 C 1.31474 * 109.92860 * 359.97438 * 17 16 15 19 19 C 1.47225 * 126.50450 * 180.02562 * 18 17 16 20 20 C 1.36523 * 126.09461 * 15.02314 * 19 18 17 21 21 C 1.40338 * 107.32898 * 179.97438 * 20 19 18 22 22 C 1.35100 * 107.75012 * 359.97438 * 21 20 19 23 23 N 1.36346 * 108.53426 * 359.77282 * 22 21 20 24 24 H 0.97009 * 125.71283 * 180.24885 * 23 22 21 25 25 N 1.36625 * 126.34931 * 197.88877 * 15 5 4 26 26 C 1.46500 * 127.18276 * 0.02562 * 25 15 5 27 27 C 1.52996 * 109.47439 * 95.36704 * 26 25 15 28 28 C 1.52999 * 117.49753 * 243.61982 * 27 26 25 29 29 C 1.53003 * 117.49461 * 174.99597 * 27 26 25 30 30 H 1.09001 * 109.47159 * 304.92295 * 1 2 3 31 31 H 1.09001 * 109.47332 * 64.92709 * 1 2 3 32 32 H 1.09007 * 109.46747 * 184.92621 * 1 2 3 33 33 H 1.09003 * 109.47101 * 64.68478 * 3 2 1 34 34 H 1.08997 * 109.47234 * 304.67938 * 3 2 1 35 35 H 1.09000 * 109.47126 * 306.51331 * 4 3 2 36 36 H 1.09006 * 109.47299 * 186.51152 * 4 3 2 37 37 H 1.09003 * 109.47131 * 62.88818 * 6 5 4 38 38 H 1.08999 * 109.46971 * 182.88491 * 6 5 4 39 39 H 0.97006 * 120.00040 * 180.02562 * 10 9 7 40 40 H 1.08001 * 126.33685 * 359.92490 * 20 19 18 41 41 H 1.08007 * 126.12093 * 180.02562 * 21 20 19 42 42 H 1.08001 * 125.73203 * 180.02562 * 22 21 20 43 43 H 1.09003 * 109.46507 * 215.36849 * 26 25 15 44 44 H 1.08996 * 109.47002 * 335.36321 * 26 25 15 45 45 H 1.08997 * 115.54831 * 29.33399 * 27 26 25 46 46 H 1.08995 * 117.49813 * 359.97438 * 28 27 26 47 47 H 1.09003 * 117.49754 * 145.02580 * 28 27 26 48 48 H 1.09001 * 117.49429 * 214.97495 * 29 27 26 49 49 H 1.08995 * 117.50407 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1867 -0.1177 5 7 3.8789 0.6408 -1.4364 6 6 3.5600 -0.7910 -1.5143 7 6 4.2841 -1.5273 -0.4167 8 1 4.8645 -0.9784 0.3101 9 6 4.2057 -2.9017 -0.3404 10 7 3.5840 -3.5781 -1.2814 11 14 4.9826 -3.8031 1.0995 12 1 5.5102 -2.8157 2.0751 13 1 3.9605 -4.6541 1.7602 14 1 6.0943 -4.6561 0.6079 15 6 5.2125 0.8691 -1.7319 16 7 6.1589 1.1728 -0.8740 17 7 7.2805 1.3162 -1.4845 18 6 7.1187 1.1118 -2.7731 19 6 8.1626 1.1824 -3.8089 20 6 9.5107 1.1867 -3.5932 21 6 10.1345 1.2638 -4.8480 22 6 9.1651 1.3036 -5.7881 23 7 7.9539 1.2489 -5.1644 24 1 7.0895 1.2579 -5.6045 25 7 5.7887 0.8142 -2.9695 26 6 5.1286 0.5057 -4.2405 27 6 4.7354 1.8082 -4.9403 28 6 3.2438 2.0715 -5.1564 29 6 4.1354 1.7027 -6.3439 30 1 -0.3633 0.5883 0.8426 31 1 -0.3634 0.4355 -0.9308 32 1 -0.3633 -1.0240 0.0883 33 1 1.7565 1.8161 0.9290 34 1 1.6238 1.8752 -0.8451 35 1 3.9049 0.5218 0.6609 36 1 3.9825 2.1721 -0.0018 37 1 2.4853 -0.9307 -1.3979 38 1 3.8745 -1.1811 -2.4823 39 1 3.5285 -4.5451 -1.2276 40 1 10.0055 1.1403 -2.6344 41 1 11.1990 1.2864 -5.0295 42 1 9.3231 1.3641 -6.8548 43 1 5.8114 -0.0570 -4.8771 44 1 4.2351 -0.0890 -4.0509 45 1 5.3729 2.6666 -4.7287 46 1 2.5427 1.3167 -4.8004 47 1 2.8996 3.1035 -5.0869 48 1 4.3778 2.4920 -7.0554 49 1 4.0213 0.7055 -6.7688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597404483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:22 Heat of formation + Delta-G solvation = 108.679809 kcal Electronic energy + Delta-G solvation = -31846.171556 eV Core-core repulsion = 27811.641716 eV Total energy + Delta-G solvation = -4034.529840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.85220 -41.80939 -39.47305 -38.78872 -37.66987 -35.32758 -34.65841 -32.23634 -31.92496 -30.78000 -29.45918 -28.57826 -27.89288 -26.96326 -24.89151 -23.83811 -23.33691 -23.24076 -22.21671 -21.69696 -21.29199 -20.65026 -19.26118 -18.80604 -17.90250 -17.55121 -17.42565 -16.97283 -16.70483 -16.14429 -16.02493 -15.67354 -15.45693 -15.30659 -15.11328 -14.76827 -14.66753 -14.57999 -14.11579 -13.53522 -13.47696 -13.28604 -13.11574 -13.09217 -12.97675 -12.77282 -12.72033 -12.54219 -12.49488 -12.40975 -12.15911 -12.03777 -11.71625 -11.58745 -11.45229 -11.11715 -11.03070 -10.73926 -10.65541 -10.27809 -9.88478 -9.52619 -8.64906 -8.20332 -6.28656 0.32171 1.16456 1.27942 1.30611 1.42378 1.45975 1.91233 2.10941 2.29105 2.35946 2.66723 2.97765 3.07259 3.13580 3.32400 3.50224 3.64565 3.88362 3.95929 4.04095 4.12065 4.20748 4.28078 4.37047 4.43242 4.47820 4.49980 4.50539 4.61505 4.64360 4.69158 4.74783 4.77997 4.89742 4.93409 4.99626 5.07675 5.11380 5.12772 5.21519 5.27692 5.35790 5.47712 5.64108 5.74941 5.81835 5.92240 6.02290 6.11622 6.40797 6.52345 6.58402 6.82015 7.37435 7.77508 8.85026 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.004421 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.168921 B = 6332.238939 C = 7739.276465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.077 3.923 4 C 0.072 3.928 5 N -0.447 5.447 6 C 0.211 3.789 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.025 3.975 10 N -0.918 5.918 11 Si 0.938 3.062 12 H -0.279 1.279 13 H -0.270 1.270 14 H -0.284 1.284 15 C 0.397 3.603 16 N -0.359 5.359 17 N -0.306 5.306 18 C 0.232 3.768 19 C 0.047 3.953 20 C -0.148 4.148 21 C -0.214 4.214 22 C 0.032 3.968 23 N -0.549 5.549 24 H 0.422 0.578 25 N -0.473 5.473 26 C 0.138 3.862 27 C -0.195 4.195 28 C -0.166 4.166 29 C -0.140 4.140 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.002 0.998 39 H 0.263 0.737 40 H 0.132 0.868 41 H 0.167 0.833 42 H 0.218 0.782 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.125 0.875 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 12.488 -14.399 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.000 4.000 4 C -0.055 4.055 5 N -0.171 5.171 6 C 0.087 3.913 7 C -0.577 4.577 8 H 0.064 0.936 9 C -0.174 4.174 10 N -0.558 5.558 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.195 1.195 14 H -0.211 1.211 15 C 0.040 3.960 16 N -0.203 5.203 17 N -0.146 5.146 18 C -0.034 4.034 19 C -0.066 4.066 20 C -0.176 4.176 21 C -0.237 4.237 22 C -0.102 4.102 23 N -0.148 5.148 24 H 0.262 0.738 25 N -0.167 5.167 26 C 0.016 3.984 27 C -0.214 4.214 28 C -0.203 4.203 29 C -0.177 4.177 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.184 0.816 42 H 0.234 0.766 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.124 0.876 48 H 0.143 0.857 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.238 12.675 -13.517 18.531 hybrid contribution -0.422 -1.463 0.594 1.634 sum -0.183 11.212 -12.923 17.110 Atomic orbital electron populations 1.22803 0.80767 1.02625 1.00627 1.88224 1.20425 1.27910 1.95162 1.22495 0.91267 0.85061 1.01147 1.22041 0.95723 0.99361 0.88374 1.59476 1.07804 1.19219 1.30616 1.19811 0.98535 0.78444 0.94538 1.21804 1.30126 0.92496 1.13270 0.93633 1.25429 0.95870 0.98220 0.97900 1.70000 1.44571 1.07442 1.33783 0.85811 0.78391 0.78644 0.80673 1.20437 1.19518 1.21053 1.22736 0.92293 0.98992 0.81986 1.74511 0.95212 1.25168 1.25429 1.74158 1.18000 1.20330 1.02140 1.21965 0.82169 1.05391 0.93859 1.16890 0.91003 1.17154 0.81530 1.21159 0.90683 1.05764 1.00002 1.21170 1.00613 1.11264 0.90683 1.22762 0.82082 1.05056 1.00281 1.42291 1.10105 1.58237 1.04124 0.73826 1.46286 1.08010 1.54027 1.08424 1.21649 0.98546 0.97525 0.80703 1.22453 0.99596 0.97087 1.02256 1.23050 0.91339 1.03407 1.02501 1.23187 1.00652 1.04814 0.89046 0.92618 0.93354 0.90597 0.90621 0.91735 0.93739 0.89562 0.91338 0.97963 0.92811 0.84988 0.81584 0.76554 0.88603 0.89044 0.88149 0.89147 0.87635 0.85671 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -15.38 7.75 -148.98 -1.15 -16.53 16 3 C 0.08 2.54 6.24 71.98 0.45 2.99 16 4 C 0.07 2.95 4.82 86.30 0.42 3.37 16 5 N -0.45 -19.55 4.66 -710.21 -3.31 -22.85 16 6 C 0.21 10.79 4.49 85.56 0.38 11.17 16 7 C -0.54 -31.04 7.71 25.60 0.20 -30.84 16 8 H 0.05 2.80 6.32 -2.91 -0.02 2.78 16 9 C 0.03 1.47 5.45 84.65 0.46 1.94 16 10 N -0.92 -54.34 13.29 21.45 0.29 -54.06 16 11 Si 0.94 47.35 29.54 68.60 2.03 49.38 16 12 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 13 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 15 C 0.40 18.05 6.09 260.04 1.58 19.64 16 16 N -0.36 -17.81 11.30 -57.92 -0.65 -18.46 16 17 N -0.31 -14.43 12.22 -51.08 -0.62 -15.05 16 18 C 0.23 9.35 7.90 135.92 1.07 10.42 16 19 C 0.05 1.52 6.93 40.25 0.28 1.79 16 20 C -0.15 -4.40 10.80 22.38 0.24 -4.16 16 21 C -0.21 -4.49 10.83 22.06 0.24 -4.25 16 22 C 0.03 0.53 11.92 83.27 0.99 1.53 16 23 N -0.55 -12.20 5.71 -184.01 -1.05 -13.25 16 24 H 0.42 7.72 5.82 -92.70 -0.54 7.18 16 25 N -0.47 -18.53 2.84 -517.01 -1.47 -20.00 16 26 C 0.14 4.14 5.57 86.38 0.48 4.62 16 27 C -0.19 -4.27 4.77 -10.79 -0.05 -4.32 16 28 C -0.17 -3.27 10.18 30.60 0.31 -2.96 16 29 C -0.14 -1.96 10.25 30.60 0.31 -1.65 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 2.14 5.87 -2.39 -0.01 2.13 16 36 H 0.09 3.29 7.77 -2.38 -0.02 3.27 16 37 H 0.07 3.65 5.55 -2.39 -0.01 3.64 16 38 H 0.00 0.13 6.40 -2.39 -0.02 0.11 16 39 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 40 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.22 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.10 2.53 6.83 -2.39 -0.02 2.51 16 44 H 0.09 3.14 6.06 -2.39 -0.01 3.13 16 45 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.09 2.06 8.03 -2.39 -0.02 2.04 16 47 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.98 397.99 3.11 -74.87 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.44 Total: 24.65 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 8.62 Total: 11.31 kcal Atomic # 7 Polarization: -136.86 SS G_CDS: -6.82 Total: -143.68 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -1.15 Total: -16.53 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.98 3.11 -74.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.548 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds