Wall clock time and date at job start Wed Apr 1 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00470 * 2 1 4 4 H 1.48499 * 109.46943 * 270.00060 * 3 2 1 5 5 H 1.48497 * 109.47078 * 29.99761 * 3 2 1 6 6 H 1.48497 * 109.47434 * 149.99818 * 3 2 1 7 7 C 1.37886 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47242 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47605 * 305.00478 * 11 10 9 13 13 N 1.46901 * 109.47049 * 65.00306 * 11 10 9 14 14 C 1.50705 * 109.47208 * 185.00189 * 11 10 9 15 15 O 1.21275 * 119.99946 * 259.99843 * 14 11 10 16 16 N 1.34773 * 119.99946 * 80.00262 * 14 11 10 17 17 C 1.46500 * 119.99867 * 179.97438 * 16 14 11 18 18 C 1.53001 * 109.46959 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.28843 * 305.70226 * 18 17 16 20 20 C 1.54259 * 110.32668 * 67.82980 * 18 17 16 21 21 C 1.54374 * 105.06107 * 118.99339 * 20 18 17 22 22 N 1.48551 * 104.59541 * 23.85769 * 21 20 18 23 23 C 1.46903 * 111.00202 * 200.95973 * 22 21 20 24 24 C 1.50709 * 109.46622 * 290.12199 * 23 22 21 25 25 C 1.38230 * 119.99879 * 269.72127 * 24 23 22 26 26 C 1.38237 * 119.99856 * 179.76640 * 25 24 23 27 27 C 1.38236 * 119.99714 * 0.51348 * 26 25 24 28 28 C 1.38235 * 120.00032 * 359.74453 * 27 26 25 29 29 C 1.38227 * 120.00096 * 359.97438 * 28 27 26 30 30 C 1.48561 * 104.22369 * 320.51345 * 22 21 20 31 31 H 0.97000 * 119.99664 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.47090 * 60.00589 * 9 7 2 33 33 H 1.09003 * 109.47335 * 300.00069 * 9 7 2 34 34 H 1.09007 * 109.46718 * 60.00186 * 10 9 7 35 35 H 1.09001 * 109.47665 * 300.00403 * 10 9 7 36 36 H 1.00896 * 111.00397 * 59.99886 * 13 11 10 37 37 H 1.00898 * 111.00229 * 183.95441 * 13 11 10 38 38 H 0.96998 * 120.00085 * 0.02562 * 16 14 11 39 39 H 1.09002 * 109.47197 * 59.99866 * 17 16 14 40 40 H 1.08999 * 109.47285 * 299.99532 * 17 16 14 41 41 H 1.08992 * 110.32465 * 237.89513 * 20 18 17 42 42 H 1.09007 * 110.31831 * 359.97438 * 20 18 17 43 43 H 1.09004 * 110.41045 * 142.63429 * 21 20 18 44 44 H 1.09000 * 110.41558 * 265.07517 * 21 20 18 45 45 H 1.08991 * 109.47335 * 50.12209 * 23 22 21 46 46 H 1.08999 * 109.47033 * 170.12809 * 23 22 21 47 47 H 1.08001 * 120.00200 * 0.02562 * 25 24 23 48 48 H 1.08000 * 120.00579 * 180.23429 * 26 25 24 49 49 H 1.08001 * 120.00295 * 179.72199 * 27 26 25 50 50 H 1.08002 * 119.99578 * 179.97438 * 28 27 26 51 51 H 1.08002 * 120.00477 * 179.97438 * 29 28 27 52 52 H 1.09005 * 110.41198 * 280.70728 * 30 22 21 53 53 H 1.08998 * 110.41368 * 158.26250 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4800 -4.9871 -0.0012 12 1 0.7887 -5.0072 0.8414 13 7 0.7269 -5.1183 -1.2556 14 6 2.4547 -6.1300 0.1214 15 8 2.7854 -6.7534 -0.8649 16 7 2.9588 -6.4593 1.3272 17 6 3.9059 -7.5706 1.4464 18 6 4.3207 -7.7322 2.9102 19 1 4.7028 -6.7892 3.3012 20 6 3.1251 -8.2175 3.7556 21 6 3.5685 -9.5786 4.3335 22 7 5.0529 -9.5228 4.3258 23 6 5.6307 -10.8727 4.3681 24 6 5.3841 -11.4824 5.7242 25 6 6.3088 -11.3114 6.7373 26 6 6.0802 -11.8665 7.9825 27 6 4.9320 -12.6015 8.2114 28 6 4.0099 -12.7769 7.1966 29 6 4.2356 -12.2169 5.9532 30 6 5.3860 -8.8410 3.0486 31 1 -0.4850 0.8401 -0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6245 -2.5571 0.8897 34 1 2.8723 -3.6048 0.8878 35 1 2.8711 -3.6041 -0.8922 36 1 1.3458 -5.1025 -2.0523 37 1 0.1625 -5.9546 -1.2528 38 1 2.6940 -5.9609 2.1161 39 1 4.7876 -7.3632 0.8401 40 1 3.4336 -8.4894 1.0987 41 1 2.9203 -7.5126 4.5613 42 1 2.2425 -8.3400 3.1276 43 1 3.1978 -9.6982 5.3515 44 1 3.2154 -10.3933 3.7013 45 1 5.1649 -11.4916 3.6014 46 1 6.7038 -10.8145 4.1857 47 1 7.2078 -10.7407 6.5573 48 1 6.8008 -11.7299 8.7753 49 1 4.7555 -13.0390 9.1829 50 1 3.1130 -13.3515 7.3754 51 1 3.5154 -12.3543 5.1602 52 1 5.3174 -9.5403 2.2152 53 1 6.3838 -8.4053 3.0992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602577174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:11 Heat of formation + Delta-G solvation = -47.002543 kcal Electronic energy + Delta-G solvation = -29069.593903 eV Core-core repulsion = 25131.853512 eV Total energy + Delta-G solvation = -3937.740390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19060 -40.56435 -39.45442 -36.88642 -36.24067 -34.79657 -33.99042 -31.91823 -31.78036 -31.39182 -30.40747 -28.37805 -27.07896 -25.88597 -24.61478 -23.47584 -22.74660 -22.25988 -21.82609 -21.17102 -20.83185 -18.67001 -18.02624 -17.70305 -17.49607 -17.16861 -16.83109 -16.50632 -16.37573 -16.16958 -16.09221 -15.64655 -15.29883 -15.00511 -14.79190 -14.51773 -14.27071 -14.24482 -14.04366 -13.81832 -13.66046 -13.54731 -13.38996 -13.14043 -12.99678 -12.79916 -12.53361 -12.48625 -12.25268 -12.17911 -11.91992 -11.82019 -11.79123 -11.73022 -11.62882 -11.49728 -11.23760 -10.98455 -10.47793 -10.13765 -9.80534 -9.75282 -9.60429 -9.42078 -8.12799 -6.22864 0.43672 0.53095 1.42603 1.43717 1.52006 1.54751 2.16842 2.45571 2.76886 3.18888 3.20319 3.56240 3.58946 3.65782 3.76670 3.90676 3.92893 3.97840 4.12789 4.17351 4.22930 4.29850 4.33713 4.36023 4.36756 4.42522 4.60343 4.62325 4.65015 4.68959 4.74396 4.78475 4.79986 4.90292 4.96164 5.04122 5.12833 5.15671 5.18789 5.22079 5.27325 5.42513 5.57677 5.58671 5.65015 5.68866 5.84139 5.86225 5.97684 6.00188 6.11343 6.14796 6.31810 6.45961 6.54975 6.95980 7.15421 7.45172 8.98296 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.001615 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.052036 B =17327.990387 C =18082.497302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.082 4.082 11 C 0.085 3.915 12 H 0.111 0.889 13 N -0.820 5.820 14 C 0.489 3.511 15 O -0.585 6.585 16 N -0.714 5.714 17 C 0.130 3.870 18 C -0.094 4.094 19 H 0.093 0.907 20 C -0.121 4.121 21 C 0.037 3.963 22 N -0.511 5.511 23 C 0.084 3.916 24 C -0.087 4.087 25 C -0.113 4.113 26 C -0.130 4.130 27 C -0.130 4.130 28 C -0.130 4.130 29 C -0.124 4.124 30 C 0.042 3.958 31 H 0.262 0.738 32 H 0.005 0.995 33 H -0.005 1.005 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.345 0.655 37 H 0.346 0.654 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.128 0.872 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.123 0.877 52 H 0.051 0.949 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.328 -28.288 15.961 34.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.030 4.030 12 H 0.129 0.871 13 N -0.349 5.349 14 C 0.274 3.726 15 O -0.465 6.465 16 N -0.366 5.366 17 C 0.006 3.994 18 C -0.114 4.114 19 H 0.111 0.889 20 C -0.159 4.159 21 C -0.090 4.090 22 N -0.235 5.235 23 C -0.044 4.044 24 C -0.087 4.087 25 C -0.131 4.131 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.148 4.148 29 C -0.142 4.142 30 C -0.086 4.086 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.014 0.986 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.146 0.854 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.153 0.847 51 H 0.141 0.859 52 H 0.070 0.930 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.289 -27.662 15.935 33.861 hybrid contribution 0.262 -0.190 -0.669 0.743 sum 11.551 -27.853 15.266 33.797 Atomic orbital electron populations 1.70106 1.07604 1.27460 1.51753 1.25894 0.95696 1.02983 0.95008 0.85545 0.78778 0.79015 0.78270 1.20230 1.20769 1.18791 1.21749 0.93384 0.92772 1.50335 0.92605 1.18837 0.93917 0.91344 0.95796 1.21386 0.97706 0.92111 1.00789 1.21639 0.93759 0.92125 0.95527 0.87141 1.58972 1.27262 1.45282 1.03336 1.22333 0.81949 0.85255 0.83064 1.90635 1.62184 1.55364 1.38323 1.46035 1.45915 1.34885 1.09725 1.21394 0.92192 0.89142 0.96635 1.22041 0.96115 1.00336 0.92868 0.88907 1.22410 0.97283 0.96805 0.99408 1.23096 0.88075 0.96907 1.00960 1.65445 1.08110 1.16638 1.33327 1.21211 1.01152 0.88700 0.93330 1.19811 0.95178 0.97942 0.95796 1.21221 0.99615 0.99210 0.93078 1.21439 0.98161 0.97844 0.97375 1.21462 0.94432 0.99027 0.99916 1.21394 1.00077 1.00094 0.93254 1.21221 0.97045 0.98158 0.97818 1.23072 0.99438 0.95334 0.90736 0.92971 0.97642 0.98647 0.91355 0.94004 0.84189 0.84067 0.74943 0.92316 0.92215 0.90258 0.90887 0.90455 0.93618 0.93369 0.89127 0.85417 0.84565 0.84481 0.84673 0.85877 0.93023 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.04 1.98 4.86 29.85 0.15 2.12 16 10 C -0.08 -3.24 4.78 30.59 0.15 -3.09 16 11 C 0.09 2.76 3.15 44.17 0.14 2.90 16 12 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 13 N -0.82 -27.53 8.44 -171.80 -1.45 -28.98 16 14 C 0.49 14.50 7.07 87.66 0.62 15.12 16 15 O -0.58 -20.93 16.25 -3.01 -0.05 -20.98 16 16 N -0.71 -15.74 5.37 -463.06 -2.49 -18.22 16 17 C 0.13 2.48 4.74 86.38 0.41 2.89 16 18 C -0.09 -1.36 3.11 -9.90 -0.03 -1.39 16 19 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 20 C -0.12 -1.67 6.39 31.49 0.20 -1.47 16 21 C 0.04 0.52 5.47 86.45 0.47 1.00 16 22 N -0.51 -7.41 5.36 -886.05 -4.75 -12.16 16 23 C 0.08 1.08 4.97 85.56 0.42 1.51 16 24 C -0.09 -1.24 5.10 -19.86 -0.10 -1.34 16 25 C -0.11 -1.57 9.70 22.27 0.22 -1.36 16 26 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 27 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 28 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 29 C -0.12 -1.68 8.73 22.27 0.19 -1.49 16 30 C 0.04 0.57 6.03 86.45 0.52 1.09 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.01 0.29 7.75 -2.39 -0.02 0.28 16 33 H 0.00 -0.27 8.14 -2.39 -0.02 -0.28 16 34 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.34 11.91 8.58 -89.70 -0.77 11.14 16 37 H 0.35 9.94 9.06 -89.70 -0.81 9.13 16 38 H 0.41 7.55 8.36 -92.71 -0.78 6.78 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.04 7.67 -2.38 -0.02 1.02 16 43 H 0.08 1.17 7.81 -2.39 -0.02 1.15 16 44 H 0.05 0.62 7.82 -2.39 -0.02 0.60 16 45 H 0.05 0.59 7.82 -2.39 -0.02 0.58 16 46 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 47 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 48 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 49 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 50 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 51 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 52 H 0.05 0.68 7.72 -2.38 -0.02 0.66 16 53 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.52 428.66 -3.15 -73.67 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -1.45 Total: 34.18 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.73 Total: -17.67 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -8.40 Total: -115.62 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.52 -3.15 -73.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.664 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds