Wall clock time and date at job start Wed Apr 1 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99901 * 2 1 4 4 C 1.50700 * 109.47452 * 293.95088 * 3 2 1 5 5 C 1.38232 * 120.00050 * 269.73058 * 4 3 2 6 6 C 1.38237 * 119.99772 * 179.76484 * 5 4 3 7 7 C 1.38239 * 119.99808 * 0.48242 * 6 5 4 8 8 C 1.38239 * 120.00209 * 359.79244 * 7 6 5 9 9 C 1.38234 * 119.99912 * 359.95166 * 8 7 6 10 10 C 1.46900 * 110.99913 * 123.95396 * 2 1 3 11 11 C 1.52998 * 109.46912 * 160.29735 * 10 2 1 12 12 H 1.08999 * 109.47379 * 57.10018 * 11 10 2 13 13 O 1.42906 * 109.47253 * 297.09355 * 11 10 2 14 14 C 1.53002 * 109.46980 * 177.09607 * 11 10 2 15 15 N 1.46507 * 109.47350 * 184.99894 * 14 11 10 16 16 C 1.35313 * 125.86654 * 124.99853 * 15 14 11 17 17 C 1.35353 * 106.17156 * 180.02562 * 16 15 14 18 18 C 1.50700 * 126.75080 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47255 * 94.99422 * 18 17 16 20 20 C 1.36937 * 119.99698 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00629 * 0.02562 * 20 19 18 22 22 C 1.38819 * 119.99403 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00461 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99704 * 180.02562 * 22 20 19 25 25 H 1.48511 * 109.47089 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47396 * 120.00150 * 24 22 20 27 27 H 1.48501 * 109.47001 * 240.00335 * 24 22 20 28 28 N 1.33770 * 106.49499 * 359.97438 * 17 16 15 29 29 N 1.28626 * 108.88801 * 359.74424 * 28 17 16 30 30 H 1.09009 * 109.46972 * 65.91424 * 1 2 3 31 31 H 1.08998 * 109.46892 * 185.90692 * 1 2 3 32 32 H 1.08992 * 109.47660 * 305.91514 * 1 2 3 33 33 H 1.08995 * 109.47019 * 53.95408 * 3 2 1 34 34 H 1.09001 * 109.47113 * 173.94992 * 3 2 1 35 35 H 1.07995 * 120.00046 * 359.97438 * 5 4 3 36 36 H 1.07995 * 119.99918 * 180.24640 * 6 5 4 37 37 H 1.08005 * 119.99487 * 179.77021 * 7 6 5 38 38 H 1.07998 * 119.99638 * 179.97438 * 8 7 6 39 39 H 1.07994 * 120.00268 * 179.97438 * 9 8 7 40 40 H 1.08997 * 109.47255 * 280.29964 * 10 2 1 41 41 H 1.09000 * 109.47275 * 40.30030 * 10 2 1 42 42 H 0.96696 * 113.99801 * 300.00067 * 13 11 10 43 43 H 1.09004 * 109.47436 * 304.99705 * 14 11 10 44 44 H 1.09000 * 109.47176 * 65.00161 * 14 11 10 45 45 H 1.08000 * 126.91209 * 0.02562 * 16 15 14 46 46 H 1.08998 * 109.47192 * 214.99787 * 18 17 16 47 47 H 1.09001 * 109.46557 * 334.99618 * 18 17 16 48 48 H 0.97001 * 119.99815 * 0.02562 * 19 18 17 49 49 H 0.96992 * 120.00201 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 6 2.4966 1.9697 -2.3782 6 6 2.1655 2.5855 -3.5708 7 6 0.9794 3.2871 -3.6804 8 6 0.1225 3.3693 -2.5988 9 6 0.4511 2.7491 -1.4079 10 6 1.9954 -0.7660 1.1376 11 6 3.4460 -1.1635 0.8572 12 1 4.0370 -0.2684 0.6632 13 8 3.4926 -2.0218 -0.2844 14 6 4.0172 -1.8984 2.0715 15 7 5.4392 -2.1737 1.8513 16 6 6.4528 -1.8139 2.6724 17 6 7.5882 -2.2646 2.0895 18 6 8.9927 -2.1134 2.6146 19 7 9.3650 -3.3146 3.3661 20 6 10.6049 -3.4062 3.9400 21 1 11.3082 -2.5929 3.8391 22 6 10.9578 -4.5447 4.6517 23 7 10.1010 -5.5362 4.7743 24 14 12.6489 -4.6694 5.4352 25 1 13.4181 -3.4308 5.1526 26 1 12.5031 -4.8380 6.9034 27 1 13.3704 -5.8388 4.8720 28 7 7.2185 -2.8704 0.9556 29 7 5.9385 -2.8044 0.8465 30 1 -0.3633 0.4194 -0.9383 31 1 -0.3633 -1.0222 0.1058 32 1 -0.3634 0.6027 0.8322 33 1 1.5611 1.9273 0.8309 34 1 3.0797 1.3444 0.1083 35 1 3.4252 1.4253 -2.2912 36 1 2.8352 2.5216 -4.4156 37 1 0.7225 3.7713 -4.6110 38 1 -0.8039 3.9178 -2.6844 39 1 -0.2182 2.8136 -0.5628 40 1 1.9541 -0.1535 2.0383 41 1 1.3939 -1.6637 1.2807 42 1 2.9872 -2.8399 -0.1822 43 1 3.9007 -1.2777 2.9599 44 1 3.4828 -2.8380 2.2120 45 1 6.3720 -1.2756 3.6052 46 1 9.6804 -1.9795 1.7795 47 1 9.0438 -1.2442 3.2703 48 1 8.7335 -4.0453 3.4564 49 1 10.3478 -6.3317 5.2712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603265898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:46 Heat of formation + Delta-G solvation = 103.580768 kcal Electronic energy + Delta-G solvation = -28953.580773 eV Core-core repulsion = 24918.829822 eV Total energy + Delta-G solvation = -4034.750951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.85460 -39.97035 -38.66333 -36.62221 -34.98626 -33.91593 -32.21325 -31.77082 -31.25961 -30.48089 -29.78835 -27.69363 -26.95460 -25.70173 -23.81656 -22.86289 -22.77712 -22.21874 -21.47603 -21.05619 -20.47724 -17.67771 -17.26249 -17.05483 -16.75761 -16.24121 -16.09911 -15.85529 -15.45588 -15.19540 -14.94895 -14.55652 -14.50047 -14.44208 -13.86614 -13.70984 -13.48534 -13.20825 -13.11423 -12.93133 -12.77610 -12.56273 -12.41015 -12.25969 -12.07102 -11.85049 -11.50736 -11.33328 -11.27667 -11.13225 -10.83706 -10.79014 -10.50210 -10.33215 -10.02169 -9.77871 -9.59466 -9.24036 -9.15767 -8.85153 -8.75302 -8.72808 -6.87734 -5.70874 -3.00135 0.97454 1.08583 1.93668 2.43659 3.02878 3.21257 3.47536 3.53117 3.55547 3.62241 4.03095 4.17280 4.29136 4.37494 4.44964 4.55312 4.61804 4.66143 4.67649 4.73989 4.77251 4.85891 4.89749 4.93053 4.97952 5.10401 5.15202 5.23304 5.32350 5.35339 5.48184 5.48855 5.54882 5.65734 5.69345 5.71671 5.92619 6.10444 6.19523 6.22405 6.26563 6.46174 6.48379 6.52315 6.67577 6.72910 6.82602 6.88279 7.49083 7.74820 8.46496 8.97847 9.58316 10.14790 10.50872 11.52051 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.001682 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.396056 B =16645.854515 C =17221.013608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.523 5.523 3 C 0.091 3.909 4 C -0.077 4.077 5 C -0.093 4.093 6 C -0.120 4.120 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.115 4.115 10 C 0.024 3.976 11 C 0.106 3.894 12 H 0.103 0.897 13 O -0.523 6.523 14 C 0.084 3.916 15 N -0.298 5.298 16 C -0.054 4.054 17 C -0.005 4.005 18 C 0.233 3.767 19 N -0.726 5.726 20 C -0.238 4.238 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.909 3.091 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.292 1.292 28 N -0.260 5.260 29 N -0.069 5.069 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.372 0.628 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.186 0.814 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.731 18.592 -10.248 34.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.247 5.247 3 C -0.036 4.036 4 C -0.078 4.078 5 C -0.112 4.112 6 C -0.138 4.138 7 C -0.139 4.139 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.105 4.105 11 C 0.044 3.956 12 H 0.120 0.880 13 O -0.326 6.326 14 C -0.039 4.039 15 N -0.092 5.092 16 C -0.204 4.204 17 C -0.143 4.143 18 C 0.104 3.896 19 N -0.371 5.371 20 C -0.369 4.369 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.219 1.219 28 N -0.128 5.128 29 N -0.048 5.048 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.219 0.781 43 H 0.128 0.872 44 H 0.118 0.882 45 H 0.203 0.797 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -27.349 18.161 -12.172 35.013 hybrid contribution 0.030 0.143 2.661 2.665 sum -27.318 18.304 -9.510 34.231 Atomic orbital electron populations 1.22480 0.86840 1.01840 1.01309 1.61806 1.07888 1.12708 1.42253 1.21139 1.00776 0.87798 0.93878 1.19654 0.94868 0.97755 0.95516 1.21101 0.99648 0.98020 0.92426 1.21205 0.97061 0.97740 0.97816 1.21174 0.94699 0.99370 0.98669 1.21095 0.99682 1.00087 0.93345 1.21026 0.96382 0.98110 0.97845 1.22809 0.96327 0.99104 0.92305 1.22089 0.94419 0.93877 0.85183 0.87972 1.86774 1.74953 1.33840 1.37066 1.22742 0.77162 1.03092 1.00916 1.47098 1.07941 1.37978 1.16228 1.23384 0.87408 1.09190 1.00385 1.22440 0.97835 1.00671 0.93314 1.18936 0.85157 0.91539 0.94015 1.42319 1.16107 1.16508 1.62126 1.19293 0.91198 1.01089 1.25338 0.90829 1.24759 0.98246 0.96596 1.01418 1.69690 1.34790 1.07235 1.46369 0.86086 0.83810 0.77422 0.78675 1.20470 1.21966 1.21870 1.75137 1.02351 1.17508 1.17774 1.78394 1.04315 1.13414 1.08715 0.90788 0.91318 0.95656 0.93844 0.89795 0.85750 0.85978 0.86225 0.86248 0.86559 0.93275 0.89676 0.78090 0.87219 0.88200 0.79706 0.94369 0.94600 0.78122 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.00 60.06 0.54 0.67 16 2 N -0.52 -3.60 4.60 -244.38 -1.12 -4.73 16 3 C 0.09 0.64 4.95 -4.98 -0.02 0.61 16 4 C -0.08 -0.62 4.88 -104.62 -0.51 -1.13 16 5 C -0.09 -0.82 9.70 -39.58 -0.38 -1.20 16 6 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 7 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 8 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 9 C -0.12 -0.81 8.12 -39.58 -0.32 -1.13 16 10 C 0.02 0.13 4.65 -3.83 -0.02 0.11 16 11 C 0.11 0.82 3.24 -26.73 -0.09 0.73 16 12 H 0.10 0.95 6.71 -51.93 -0.35 0.60 16 13 O -0.52 -5.48 12.29 -35.23 -0.43 -5.91 16 14 C 0.08 0.67 6.14 -4.04 -0.02 0.64 16 15 N -0.30 -4.16 3.44 -61.25 -0.21 -4.37 16 16 C -0.05 -0.82 11.50 -17.05 -0.20 -1.02 16 17 C -0.01 -0.10 6.62 -82.78 -0.55 -0.65 16 18 C 0.23 5.03 6.82 -5.19 -0.04 5.00 16 19 N -0.73 -19.39 5.59 -61.08 -0.34 -19.73 16 20 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 21 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 24 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 N -0.26 -5.51 12.41 33.29 0.41 -5.09 16 29 N -0.07 -1.25 12.10 60.35 0.73 -0.52 16 30 H 0.07 0.48 6.56 -51.92 -0.34 0.14 16 31 H 0.07 0.34 7.83 -51.93 -0.41 -0.06 16 32 H 0.02 0.12 8.06 -51.93 -0.42 -0.30 16 33 H 0.04 0.26 8.00 -51.93 -0.42 -0.15 16 34 H 0.08 0.62 6.53 -51.93 -0.34 0.28 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.12 0.64 8.03 -52.49 -0.42 0.21 16 40 H 0.05 0.20 8.00 -51.93 -0.42 -0.21 16 41 H 0.08 0.35 7.74 -51.93 -0.40 -0.05 16 42 H 0.37 2.78 9.04 45.56 0.41 3.20 16 43 H 0.11 0.54 8.07 -51.93 -0.42 0.13 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.39 11.09 7.66 -40.82 -0.31 10.78 16 49 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 408.71 15.07 6.16 6.16 Total: -1.00 -37.23 408.71 -8.91 -46.14 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.76 Total: 7.34 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.05 Total: -8.70 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.19 Total: -62.77 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.43 Total: -5.91 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.23 -8.91 -46.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603265898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.723 kcal (2) G-P(sol) polarization free energy of solvation -37.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds