Wall clock time and date at job start Wed Apr 1 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99877 * 2 1 4 4 C 1.50692 * 109.47288 * 66.05029 * 3 2 1 5 5 C 1.38237 * 119.99963 * 269.72768 * 4 3 2 6 6 C 1.38240 * 119.99953 * 179.76614 * 5 4 3 7 7 C 1.38230 * 119.99999 * 0.50249 * 6 5 4 8 8 C 1.38237 * 120.00044 * 359.75224 * 7 6 5 9 9 C 1.38237 * 120.00189 * 89.99979 * 4 3 2 10 10 C 1.46906 * 110.99936 * 236.05009 * 2 1 3 11 11 C 1.52998 * 109.47200 * 199.50379 * 10 2 1 12 12 H 1.09001 * 109.46828 * 305.09597 * 11 10 2 13 13 O 1.42907 * 109.47142 * 65.09462 * 11 10 2 14 14 C 1.53004 * 109.47120 * 185.09425 * 11 10 2 15 15 N 1.46500 * 109.46761 * 174.99943 * 14 11 10 16 16 C 1.35312 * 125.86629 * 125.29715 * 15 14 11 17 17 C 1.35355 * 106.17462 * 180.17928 * 16 15 14 18 18 C 1.50690 * 126.75314 * 179.85218 * 17 16 15 19 19 N 1.46497 * 109.47320 * 94.71806 * 18 17 16 20 20 C 1.36936 * 120.00024 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00476 * 359.71558 * 20 19 18 22 22 C 1.38815 * 119.99733 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00068 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00205 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47480 * 90.00056 * 24 22 20 26 26 H 1.48506 * 109.47215 * 209.99816 * 24 22 20 27 27 H 1.48502 * 109.47241 * 329.99700 * 24 22 20 28 28 N 1.33776 * 106.49582 * 359.59558 * 17 16 15 29 29 N 1.28636 * 108.88550 * 0.25632 * 28 17 16 30 30 H 1.09000 * 109.47169 * 177.68631 * 1 2 3 31 31 H 1.09000 * 109.47062 * 297.68009 * 1 2 3 32 32 H 1.08993 * 109.47154 * 57.68247 * 1 2 3 33 33 H 1.09004 * 109.47101 * 186.05271 * 3 2 1 34 34 H 1.08999 * 109.47215 * 306.04544 * 3 2 1 35 35 H 1.07999 * 120.00112 * 359.97438 * 5 4 3 36 36 H 1.08003 * 119.99789 * 180.22769 * 6 5 4 37 37 H 1.07998 * 120.00136 * 179.72781 * 7 6 5 38 38 H 1.07995 * 120.00061 * 179.97438 * 8 7 6 39 39 H 1.07998 * 120.00025 * 359.97438 * 9 4 3 40 40 H 1.08998 * 109.47537 * 79.49855 * 10 2 1 41 41 H 1.09003 * 109.46898 * 319.49765 * 10 2 1 42 42 H 0.96694 * 113.99897 * 60.00156 * 13 11 10 43 43 H 1.08999 * 109.46546 * 55.00116 * 14 11 10 44 44 H 1.08994 * 109.46958 * 295.00070 * 14 11 10 45 45 H 1.07998 * 126.91341 * 0.03812 * 16 15 14 46 46 H 1.08999 * 109.47668 * 334.71282 * 18 17 16 47 47 H 1.09002 * 109.47151 * 214.71672 * 18 17 16 48 48 H 0.96999 * 120.00244 * 359.97438 * 19 18 17 49 49 H 0.97001 * 120.00212 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4538 2.7538 1.4062 6 6 0.1228 3.3695 2.5988 7 6 0.9797 3.2873 3.6803 8 6 2.1654 2.5850 3.5709 9 6 2.4940 1.9649 2.3799 10 6 1.9955 -0.7659 -1.1377 11 6 3.4476 -1.1592 -0.8595 12 1 4.0282 -0.2659 -0.6293 13 8 3.4936 -2.0567 0.2517 14 6 4.0356 -1.8456 -2.0941 15 7 5.4584 -2.1148 -1.8719 16 6 6.0637 -3.3200 -1.9814 17 6 7.3691 -3.1143 -1.6887 18 6 8.4628 -4.1507 -1.6681 19 7 9.1515 -4.1597 -2.9610 20 6 10.1889 -5.0268 -3.1782 21 1 10.5023 -5.7009 -2.3948 22 6 10.8411 -5.0356 -4.4036 23 7 11.8386 -5.8687 -4.6122 24 14 10.3033 -3.8651 -5.7564 25 1 11.0624 -2.5939 -5.6419 26 1 10.5694 -4.4830 -7.0803 27 1 8.8505 -3.5880 -5.6225 28 7 7.4985 -1.8088 -1.4267 29 7 6.3484 -1.2447 -1.5439 30 1 -0.3633 -1.0268 -0.0415 31 1 -0.3633 0.4774 0.9101 32 1 -0.3633 0.5494 -0.8684 33 1 3.0797 1.3444 -0.1084 34 1 1.5611 1.9273 -0.8309 35 1 -0.2135 2.8220 0.5598 36 1 -0.8034 3.9186 2.6842 37 1 0.7231 3.7721 4.6107 38 1 2.8351 2.5212 4.4157 39 1 3.4203 1.4162 2.2945 40 1 1.9508 -0.1547 -2.0391 41 1 1.3961 -1.6654 -1.2786 42 1 2.9971 -2.8754 0.1168 43 1 3.9199 -1.1951 -2.9610 44 1 3.5115 -2.7846 -2.2719 45 1 5.5985 -4.2579 -2.2465 46 1 8.0292 -5.1330 -1.4806 47 1 9.1753 -3.9115 -0.8786 48 1 8.8723 -3.5519 -3.6635 49 1 12.2941 -5.8751 -5.4686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603265902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:49 Heat of formation + Delta-G solvation = 105.658094 kcal Electronic energy + Delta-G solvation = -29040.612675 eV Core-core repulsion = 25005.951803 eV Total energy + Delta-G solvation = -4034.660872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02478 -40.00535 -38.76775 -36.73654 -35.22968 -34.07944 -32.24991 -31.85808 -31.28145 -30.65787 -30.19366 -27.75527 -27.04214 -26.05922 -23.91933 -22.87844 -22.50190 -22.20574 -21.62280 -21.09138 -20.56000 -18.03457 -17.42078 -17.23690 -16.75098 -16.61613 -16.13241 -15.91108 -15.50143 -15.35699 -14.99953 -14.65983 -14.55414 -14.39210 -14.07595 -13.80767 -13.63721 -13.23659 -13.17407 -12.91432 -12.74490 -12.67815 -12.48073 -12.31799 -12.16755 -12.04274 -11.68007 -11.45341 -11.35879 -11.28518 -11.06205 -10.85357 -10.73529 -10.49024 -10.14854 -9.78051 -9.56397 -9.25541 -9.17622 -8.93801 -8.86203 -8.78569 -7.19970 -5.73191 -3.08462 0.95899 1.07125 1.77406 2.29772 2.84407 3.17375 3.40965 3.46313 3.49048 3.58820 3.83961 4.10133 4.27190 4.29593 4.37533 4.45560 4.57663 4.63650 4.66058 4.68389 4.72378 4.78825 4.84387 4.87697 4.91287 5.06855 5.13429 5.18280 5.22187 5.30931 5.39063 5.44084 5.44629 5.59848 5.64527 5.70246 5.77426 5.79463 6.08834 6.18069 6.24836 6.33074 6.41271 6.48373 6.62219 6.65971 6.69013 6.74305 7.26196 8.01930 8.45654 8.78017 9.23992 9.96593 10.17042 11.44994 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.001781 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.992519 B =15721.843786 C =16099.621913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.524 5.524 3 C 0.089 3.911 4 C -0.077 4.077 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.093 4.093 10 C 0.024 3.976 11 C 0.103 3.897 12 H 0.116 0.884 13 O -0.535 6.535 14 C 0.084 3.916 15 N -0.292 5.292 16 C -0.041 4.041 17 C -0.012 4.012 18 C 0.238 3.762 19 N -0.750 5.750 20 C -0.242 4.242 21 H 0.094 0.906 22 C 0.006 3.994 23 N -0.933 5.933 24 Si 0.884 3.116 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.280 1.280 28 N -0.254 5.254 29 N -0.093 5.093 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.371 0.629 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.188 0.812 46 H 0.046 0.954 47 H 0.048 0.952 48 H 0.362 0.638 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.700 15.631 11.576 38.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.247 5.247 3 C -0.038 4.038 4 C -0.078 4.078 5 C -0.134 4.134 6 C -0.142 4.142 7 C -0.139 4.139 8 C -0.138 4.138 9 C -0.112 4.112 10 C -0.105 4.105 11 C 0.042 3.958 12 H 0.133 0.867 13 O -0.338 6.338 14 C -0.039 4.039 15 N -0.085 5.085 16 C -0.192 4.192 17 C -0.150 4.150 18 C 0.109 3.891 19 N -0.396 5.396 20 C -0.372 4.372 21 H 0.111 0.889 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.715 3.285 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.122 5.122 29 N -0.072 5.072 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.217 0.783 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.205 0.795 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.195 0.805 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -31.749 17.174 12.609 38.235 hybrid contribution -1.396 -0.326 -2.453 2.842 sum -33.145 16.847 10.156 38.543 Atomic orbital electron populations 1.22483 0.86839 1.02051 1.01191 1.61824 1.07921 1.12865 1.42138 1.21160 1.01000 0.87700 0.93912 1.19649 0.94902 0.97758 0.95473 1.21029 0.96404 0.98137 0.97822 1.21096 0.99688 1.00105 0.93320 1.21171 0.94678 0.99358 0.98687 1.21207 0.97056 0.97718 0.97846 1.21108 0.99622 0.98040 0.92417 1.22781 0.95991 0.99183 0.92513 1.22223 0.94746 0.93903 0.84973 0.86671 1.86762 1.75597 1.32167 1.39322 1.22755 0.76369 1.03971 1.00793 1.47017 1.09252 1.06663 1.45590 1.23397 0.94649 0.91440 1.09706 1.22485 0.94756 0.93602 1.04115 1.18904 0.88785 0.91325 0.90065 1.42659 1.39818 1.45902 1.11209 1.19059 1.06148 1.12637 0.99348 0.88864 1.24628 0.97889 0.98931 0.97494 1.69701 1.24513 1.39630 1.24285 0.86548 0.78072 0.81399 0.82486 1.20972 1.21756 1.20674 1.75097 1.13684 1.06796 1.16610 1.78194 0.92923 1.17869 1.18225 0.91325 0.90686 0.95643 0.89525 0.93772 0.86556 0.86241 0.86217 0.85970 0.85716 0.93081 0.89753 0.78264 0.87794 0.87404 0.79462 0.93649 0.93460 0.80543 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.07 60.07 0.54 0.67 16 2 N -0.52 -3.49 4.63 -244.37 -1.13 -4.62 16 3 C 0.09 0.63 4.95 -4.98 -0.02 0.61 16 4 C -0.08 -0.61 4.87 -104.63 -0.51 -1.12 16 5 C -0.12 -0.80 8.04 -39.58 -0.32 -1.12 16 6 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 7 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 8 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 9 C -0.09 -0.81 9.70 -39.58 -0.38 -1.20 16 10 C 0.02 0.12 4.64 -3.82 -0.02 0.10 16 11 C 0.10 0.75 3.14 -26.73 -0.08 0.66 16 12 H 0.12 1.12 6.50 -51.93 -0.34 0.78 16 13 O -0.53 -4.87 13.23 -35.23 -0.47 -5.34 16 14 C 0.08 0.60 6.09 -4.04 -0.02 0.58 16 15 N -0.29 -3.79 3.39 -61.26 -0.21 -4.00 16 16 C -0.04 -0.59 11.50 -17.05 -0.20 -0.78 16 17 C -0.01 -0.21 6.61 -82.78 -0.55 -0.76 16 18 C 0.24 4.90 6.82 -5.20 -0.04 4.86 16 19 N -0.75 -18.73 5.40 -61.09 -0.33 -19.06 16 20 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 21 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.66 13.97 55.49 0.78 -28.89 16 24 Si 0.88 22.94 27.73 -169.99 -4.71 18.23 16 25 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.28 -6.93 6.52 56.52 0.37 -6.56 16 28 N -0.25 -5.07 12.41 33.29 0.41 -4.66 16 29 N -0.09 -1.58 12.82 60.35 0.77 -0.80 16 30 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 31 H 0.07 0.47 6.33 -51.93 -0.33 0.14 16 32 H 0.03 0.12 8.12 -51.93 -0.42 -0.30 16 33 H 0.09 0.67 6.50 -51.93 -0.34 0.33 16 34 H 0.04 0.27 8.05 -51.93 -0.42 -0.15 16 35 H 0.12 0.63 8.05 -52.49 -0.42 0.21 16 36 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.05 0.21 8.00 -51.93 -0.42 -0.20 16 41 H 0.08 0.28 7.80 -51.93 -0.40 -0.12 16 42 H 0.37 1.95 9.04 45.56 0.41 2.36 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.11 0.43 8.07 -51.93 -0.42 0.01 16 45 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.36 9.12 5.52 -40.82 -0.23 8.89 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 406.85 15.07 6.13 6.13 Total: -1.00 -37.69 406.85 -8.50 -46.20 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.70 Total: 5.20 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -3.04 Total: -8.40 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.29 Total: -62.02 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.47 Total: -5.34 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.69 -8.50 -46.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603265902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.857 kcal (2) G-P(sol) polarization free energy of solvation -37.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds