Wall clock time and date at job start Wed Apr 1 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00159 * 2 1 4 4 C 1.52998 * 109.47296 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46970 * 67.10666 * 4 3 2 6 6 C 1.46909 * 110.99534 * 290.07628 * 5 4 3 7 7 C 1.52994 * 109.47296 * 299.62755 * 6 5 4 8 8 C 1.53001 * 109.46919 * 177.90328 * 7 6 5 9 9 C 1.50708 * 109.46854 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99744 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99620 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00481 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99555 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47315 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47329 * 120.00045 * 13 11 9 16 16 H 1.48504 * 109.46810 * 239.99819 * 13 11 9 17 17 C 1.46896 * 111.00078 * 54.03054 * 5 4 3 18 18 C 1.50693 * 109.47304 * 66.04683 * 17 5 4 19 19 C 1.38316 * 119.88064 * 89.99577 * 18 17 5 20 20 C 1.38034 * 120.11837 * 180.02562 * 19 18 17 21 21 C 1.39299 * 119.87869 * 359.97438 * 20 19 18 22 22 C 1.48459 * 120.11460 * 179.97438 * 21 20 19 23 23 N 1.34051 * 126.67792 * 0.02681 * 22 21 20 24 24 N 1.28983 * 107.27207 * 179.97438 * 23 22 21 25 25 N 1.28727 * 108.94134 * 0.02562 * 24 23 22 26 26 H 0.97007 * 125.33830 * 179.97438 * 25 24 23 27 27 N 1.28868 * 109.31855 * 359.97438 * 25 24 23 28 28 C 1.39298 * 119.76837 * 0.25813 * 21 20 19 29 29 C 1.38032 * 119.87882 * 359.48420 * 28 21 20 30 30 H 1.08992 * 109.47435 * 300.00574 * 1 2 3 31 31 H 1.09007 * 109.46548 * 60.00353 * 1 2 3 32 32 H 1.08994 * 109.47256 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47435 * 59.99543 * 3 2 1 34 34 H 1.09002 * 109.47483 * 299.99756 * 3 2 1 35 35 H 1.08997 * 109.47373 * 307.10791 * 4 3 2 36 36 H 1.08996 * 109.47309 * 187.10248 * 4 3 2 37 37 H 1.09003 * 109.46921 * 59.63305 * 6 5 4 38 38 H 1.09003 * 109.46436 * 179.62736 * 6 5 4 39 39 H 1.08997 * 109.47695 * 297.90341 * 7 6 5 40 40 H 1.09002 * 109.47219 * 57.90429 * 7 6 5 41 41 H 1.09001 * 109.47134 * 299.99735 * 8 7 6 42 42 H 1.08991 * 109.47538 * 60.00282 * 8 7 6 43 43 H 0.97002 * 120.00101 * 179.97438 * 12 11 9 44 44 H 1.09002 * 109.47406 * 306.04355 * 17 5 4 45 45 H 1.09007 * 109.47137 * 186.05061 * 17 5 4 46 46 H 1.08002 * 119.93913 * 0.02562 * 19 18 17 47 47 H 1.08003 * 120.05662 * 180.02562 * 20 19 18 48 48 H 1.07999 * 120.05940 * 179.74510 * 28 21 20 49 49 H 1.08004 * 119.94223 * 180.23139 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9816 0.6086 -1.2750 6 6 3.6002 -0.8066 -1.3755 7 6 4.2523 -1.5926 -0.2364 8 6 3.8133 -3.0565 -0.3103 9 6 4.4551 -3.8306 0.8122 10 1 5.1108 -3.3288 1.5084 11 6 4.2060 -5.1797 0.9497 12 7 3.4080 -5.7909 0.1016 13 14 5.0010 -6.1391 2.3415 14 1 5.8481 -5.2268 3.1509 15 1 3.9447 -6.7288 3.2027 16 1 5.8425 -7.2246 1.7768 17 6 3.4571 1.3772 -2.4117 18 6 4.0650 2.7561 -2.4090 19 6 5.2449 2.9904 -3.0917 20 6 5.8062 4.2514 -3.0920 21 6 5.1820 5.2891 -2.4036 22 6 5.7814 6.6473 -2.4000 23 7 6.9133 7.0245 -3.0112 24 7 7.0819 8.2792 -2.7643 25 7 6.1097 8.6950 -2.0300 26 1 6.0007 9.6023 -1.7045 27 7 5.3042 7.7169 -1.7954 28 6 3.9964 5.0465 -1.7137 29 6 3.4408 3.7830 -1.7243 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8484 0.5380 0.8204 36 1 3.9782 2.1725 0.1277 37 1 2.5162 -0.8966 -1.3053 38 1 3.9368 -1.2064 -2.3321 39 1 5.3367 -1.5334 -0.3281 40 1 3.9449 -1.1690 0.7198 41 1 2.7288 -3.1157 -0.2184 42 1 4.1206 -3.4801 -1.2664 43 1 3.2331 -6.7401 0.1982 44 1 2.3734 1.4577 -2.3269 45 1 3.7120 0.8696 -3.3421 46 1 5.7278 2.1852 -3.6255 47 1 6.7274 4.4333 -3.6258 48 1 3.5106 5.8466 -1.1750 49 1 2.5196 3.5947 -1.1928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736995713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:20 Heat of formation + Delta-G solvation = 108.834042 kcal Electronic energy + Delta-G solvation = -29549.325166 eV Core-core repulsion = 25514.802014 eV Total energy + Delta-G solvation = -4034.523152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.77099 -39.98355 -38.52915 -36.50285 -34.76405 -34.13143 -33.46253 -31.81628 -31.29145 -30.78208 -29.28308 -27.05929 -26.37376 -25.19842 -24.94287 -23.77094 -22.96105 -22.62303 -21.58671 -20.37238 -19.54611 -19.39489 -17.45985 -17.07750 -16.66979 -16.59562 -16.17513 -15.55410 -15.25854 -15.16366 -14.81243 -14.39640 -14.32690 -14.14424 -13.75348 -13.66104 -13.53109 -13.06081 -12.76940 -12.51412 -12.25010 -12.08964 -11.85428 -11.71113 -11.63920 -11.61117 -11.52284 -11.29035 -11.23119 -11.11202 -11.06425 -10.82138 -10.71065 -10.43165 -10.29622 -9.64123 -9.28460 -9.19065 -9.13695 -8.92818 -8.72290 -8.23536 -7.86549 -5.89747 -3.90362 0.43948 0.88376 1.21366 1.90112 2.08002 3.37008 3.38302 3.44194 3.49030 3.55571 3.87748 3.89231 4.36284 4.55514 4.66980 4.68263 4.78236 4.95149 5.06891 5.10502 5.16048 5.23243 5.27169 5.34559 5.40320 5.46161 5.46222 5.51063 5.57841 5.64404 5.80431 5.82332 5.86060 5.98523 5.99896 6.13940 6.21967 6.23568 6.29666 6.47135 6.65046 6.69542 6.91785 6.93383 7.22889 7.30868 7.47168 7.52436 7.81897 7.83031 8.02057 8.13706 8.57237 9.17431 9.72640 11.21755 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.001992 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.460523 B =14052.303119 C =14879.834687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.017 3.983 4 C 0.047 3.953 5 N -0.525 5.525 6 C 0.047 3.953 7 C -0.099 4.099 8 C 0.025 3.975 9 C -0.512 4.512 10 H 0.054 0.946 11 C 0.054 3.946 12 N -0.897 5.897 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.079 3.921 18 C -0.043 4.043 19 C -0.100 4.100 20 C -0.073 4.073 21 C -0.030 4.030 22 C 0.226 3.774 23 N -0.269 5.269 24 N -0.051 5.051 25 N -0.230 5.230 26 H 0.475 0.525 27 N -0.297 5.297 28 C -0.078 4.078 29 C -0.123 4.123 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.258 0.742 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.130 0.870 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 29.052 -5.746 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.284 6.284 3 C -0.061 4.061 4 C -0.082 4.082 5 N -0.247 5.247 6 C -0.079 4.079 7 C -0.137 4.137 8 C -0.013 4.013 9 C -0.550 4.550 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.049 4.049 18 C -0.045 4.045 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.034 4.034 22 C -0.054 4.054 23 N -0.142 5.142 24 N -0.046 5.046 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.149 5.149 28 C -0.099 4.099 29 C -0.141 4.141 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.148 0.852 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.112 29.188 -5.969 29.813 hybrid contribution -1.128 -0.032 1.182 1.634 sum -2.240 29.156 -4.787 29.631 Atomic orbital electron populations 1.22749 0.82128 1.02983 0.99064 1.88208 1.18872 1.26453 1.94824 1.23446 0.96787 0.86042 0.99826 1.22446 0.90098 1.01276 0.94360 1.62326 1.58533 1.03507 1.00360 1.22553 1.00411 0.84741 1.00195 1.21595 0.98925 0.97464 0.95718 1.19029 0.96599 0.88971 0.96669 1.21319 1.27618 0.93585 1.12510 0.92802 1.25016 0.95447 0.97923 0.96220 1.69980 1.37034 1.10008 1.36695 0.86590 0.79200 0.80040 0.82480 1.19789 1.21181 1.21134 1.21200 0.97064 0.90463 0.96140 1.20074 0.94555 0.95044 0.94786 1.21026 0.95021 0.96361 0.99487 1.21177 0.99415 0.91702 0.97049 1.17193 0.96459 0.86520 1.03209 1.23782 0.91377 0.94774 0.95435 1.76099 1.15654 1.01973 1.20459 1.78915 1.11188 1.06568 1.07930 1.47726 1.13506 1.13195 1.33109 0.67108 1.74927 1.19730 0.96428 1.23807 1.21060 0.94013 0.97307 0.97482 1.21034 1.00615 0.92259 1.00232 0.94532 0.94767 0.89388 0.93484 0.93219 0.88589 0.89740 0.91801 0.92096 0.93459 0.93201 0.96575 0.96988 0.93274 0.93394 0.89687 0.84803 0.84739 0.85243 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.50 7.58 -35.23 -0.27 -5.77 16 3 C 0.02 0.21 5.15 37.16 0.19 0.40 16 4 C 0.05 0.62 5.18 -3.82 -0.02 0.60 16 5 N -0.52 -7.51 4.75 -236.07 -1.12 -8.63 16 6 C 0.05 0.82 4.53 -3.82 -0.02 0.81 16 7 C -0.10 -2.12 5.02 -26.73 -0.13 -2.25 16 8 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 9 C -0.51 -14.88 9.11 -34.44 -0.31 -15.19 16 10 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 13 Si 0.89 22.16 29.54 -169.99 -5.02 17.13 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 C 0.08 0.91 4.79 -4.98 -0.02 0.89 16 18 C -0.04 -0.45 4.89 -104.57 -0.51 -0.96 16 19 C -0.10 -1.01 9.68 -39.63 -0.38 -1.40 16 20 C -0.07 -0.73 9.70 -39.26 -0.38 -1.11 16 21 C -0.03 -0.31 5.88 -104.90 -0.62 -0.92 16 22 C 0.23 2.37 7.94 -156.30 -1.24 1.13 16 23 N -0.27 -2.99 12.23 32.15 0.39 -2.60 16 24 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 25 N -0.23 -1.46 7.90 60.35 0.48 -0.98 16 26 H 0.47 0.65 8.96 -340.37 -3.05 -2.40 16 27 N -0.30 -2.62 12.08 32.17 0.39 -2.24 16 28 C -0.08 -0.72 9.70 -39.26 -0.38 -1.10 16 29 C -0.12 -1.14 8.02 -39.63 -0.32 -1.46 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.52 4.39 -51.93 -0.23 0.29 16 35 H 0.10 1.48 5.80 -51.93 -0.30 1.18 16 36 H 0.08 0.99 6.56 -51.93 -0.34 0.65 16 37 H 0.06 1.17 5.29 -51.93 -0.27 0.89 16 38 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.07 6.10 -51.93 -0.32 0.75 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.05 0.54 5.66 -51.93 -0.29 0.24 16 45 H 0.08 0.96 7.95 -51.92 -0.41 0.54 16 46 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.13 1.23 7.89 -52.48 -0.41 0.82 16 48 H 0.13 1.03 7.88 -52.49 -0.41 0.61 16 49 H 0.13 1.01 6.11 -52.48 -0.32 0.69 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -34.40 394.93 -10.63 -45.03 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -9.71 Total: -4.41 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -3.27 Total: -17.12 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 1.69 Total: -40.81 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.27 Total: -5.77 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.40 -10.63 -45.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736995713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.860 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds