Wall clock time and date at job start Wed Apr 1 2020 03:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00159 * 2 1 4 4 C 1.52998 * 109.47296 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46970 * 67.10666 * 4 3 2 6 6 C 1.46909 * 110.99534 * 290.07628 * 5 4 3 7 7 C 1.52994 * 109.47296 * 299.62755 * 6 5 4 8 8 C 1.53001 * 109.46919 * 177.90328 * 7 6 5 9 9 C 1.50708 * 109.46854 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99744 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99620 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00481 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99555 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47315 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47329 * 120.00045 * 13 11 9 16 16 H 1.48504 * 109.46810 * 239.99819 * 13 11 9 17 17 C 1.46896 * 111.00078 * 54.03054 * 5 4 3 18 18 C 1.50693 * 109.47304 * 66.04683 * 17 5 4 19 19 C 1.38316 * 119.88064 * 89.99577 * 18 17 5 20 20 C 1.38034 * 120.11837 * 180.02562 * 19 18 17 21 21 C 1.39299 * 119.87869 * 359.97438 * 20 19 18 22 22 C 1.48459 * 120.11460 * 179.97438 * 21 20 19 23 23 N 1.34051 * 126.67792 * 0.02681 * 22 21 20 24 24 N 1.28983 * 107.27207 * 179.97438 * 23 22 21 25 25 N 1.28727 * 108.94134 * 0.02562 * 24 23 22 26 26 H 0.97007 * 125.33830 * 179.97438 * 25 24 23 27 27 N 1.28868 * 109.31855 * 359.97438 * 25 24 23 28 28 C 1.39298 * 119.76837 * 0.25813 * 21 20 19 29 29 C 1.38032 * 119.87882 * 359.48420 * 28 21 20 30 30 H 1.08992 * 109.47435 * 300.00574 * 1 2 3 31 31 H 1.09007 * 109.46548 * 60.00353 * 1 2 3 32 32 H 1.08994 * 109.47256 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47435 * 59.99543 * 3 2 1 34 34 H 1.09002 * 109.47483 * 299.99756 * 3 2 1 35 35 H 1.08997 * 109.47373 * 307.10791 * 4 3 2 36 36 H 1.08996 * 109.47309 * 187.10248 * 4 3 2 37 37 H 1.09003 * 109.46921 * 59.63305 * 6 5 4 38 38 H 1.09003 * 109.46436 * 179.62736 * 6 5 4 39 39 H 1.08997 * 109.47695 * 297.90341 * 7 6 5 40 40 H 1.09002 * 109.47219 * 57.90429 * 7 6 5 41 41 H 1.09001 * 109.47134 * 299.99735 * 8 7 6 42 42 H 1.08991 * 109.47538 * 60.00282 * 8 7 6 43 43 H 0.97002 * 120.00101 * 179.97438 * 12 11 9 44 44 H 1.09002 * 109.47406 * 306.04355 * 17 5 4 45 45 H 1.09007 * 109.47137 * 186.05061 * 17 5 4 46 46 H 1.08002 * 119.93913 * 0.02562 * 19 18 17 47 47 H 1.08003 * 120.05662 * 180.02562 * 20 19 18 48 48 H 1.07999 * 120.05940 * 179.74510 * 28 21 20 49 49 H 1.08004 * 119.94223 * 180.23139 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9816 0.6086 -1.2750 6 6 3.6002 -0.8066 -1.3755 7 6 4.2523 -1.5926 -0.2364 8 6 3.8133 -3.0565 -0.3103 9 6 4.4551 -3.8306 0.8122 10 1 5.1108 -3.3288 1.5084 11 6 4.2060 -5.1797 0.9497 12 7 3.4080 -5.7909 0.1016 13 14 5.0010 -6.1391 2.3415 14 1 5.8481 -5.2268 3.1509 15 1 3.9447 -6.7288 3.2027 16 1 5.8425 -7.2246 1.7768 17 6 3.4571 1.3772 -2.4117 18 6 4.0650 2.7561 -2.4090 19 6 5.2449 2.9904 -3.0917 20 6 5.8062 4.2514 -3.0920 21 6 5.1820 5.2891 -2.4036 22 6 5.7814 6.6473 -2.4000 23 7 6.9133 7.0245 -3.0112 24 7 7.0819 8.2792 -2.7643 25 7 6.1097 8.6950 -2.0300 26 1 6.0007 9.6023 -1.7045 27 7 5.3042 7.7169 -1.7954 28 6 3.9964 5.0465 -1.7137 29 6 3.4408 3.7830 -1.7243 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8484 0.5380 0.8204 36 1 3.9782 2.1725 0.1277 37 1 2.5162 -0.8966 -1.3053 38 1 3.9368 -1.2064 -2.3321 39 1 5.3367 -1.5334 -0.3281 40 1 3.9449 -1.1690 0.7198 41 1 2.7288 -3.1157 -0.2184 42 1 4.1206 -3.4801 -1.2664 43 1 3.2331 -6.7401 0.1982 44 1 2.3734 1.4577 -2.3269 45 1 3.7120 0.8696 -3.3421 46 1 5.7278 2.1852 -3.6255 47 1 6.7274 4.4333 -3.6258 48 1 3.5106 5.8466 -1.1750 49 1 2.5196 3.5947 -1.1928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736995713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:19 Heat of formation + Delta-G solvation = 85.814548 kcal Electronic energy + Delta-G solvation = -29550.323366 eV Core-core repulsion = 25514.802014 eV Total energy + Delta-G solvation = -4035.521352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.45032 -40.86172 -39.48977 -37.60917 -35.83392 -35.34738 -34.66226 -33.41659 -32.06406 -31.85469 -30.42715 -28.52650 -27.34576 -26.50702 -25.70966 -24.65369 -24.44513 -23.35201 -22.78379 -21.60570 -20.77368 -20.18674 -18.43136 -18.13213 -17.81971 -17.67269 -17.54281 -16.59035 -16.46749 -16.13181 -16.04447 -15.85634 -15.32382 -15.15108 -15.03311 -14.52927 -14.37049 -14.27283 -13.87214 -13.72642 -13.36628 -13.35016 -13.21349 -12.93937 -12.79641 -12.66430 -12.57573 -12.46001 -12.39195 -12.25779 -12.16535 -12.06713 -11.87489 -11.84336 -11.75472 -11.33920 -11.24877 -10.97759 -10.51415 -10.37654 -9.86127 -9.53389 -8.99269 -8.15262 -6.25126 -0.28405 0.18519 0.49188 1.31739 1.40682 1.41170 1.43850 1.54738 2.43757 2.68725 2.74365 2.95045 3.17331 3.18370 3.31553 3.83280 3.90982 4.05420 4.10386 4.22910 4.25504 4.33907 4.41210 4.44625 4.45740 4.49061 4.55244 4.58095 4.59353 4.68689 4.80976 4.83916 4.89198 4.97169 4.97869 5.09383 5.15969 5.19918 5.34918 5.40481 5.41696 5.48272 5.59461 5.62599 5.69599 5.87853 5.94545 5.96152 6.20503 6.25608 6.34723 6.38605 6.91997 7.12553 7.43045 8.96713 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.001992 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.460523 B =14052.303119 C =14879.834687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.019 3.981 4 C 0.047 3.953 5 N -0.530 5.530 6 C 0.062 3.938 7 C -0.082 4.082 8 C 0.032 3.968 9 C -0.537 4.537 10 H 0.055 0.945 11 C -0.002 4.002 12 N -0.933 5.933 13 Si 0.963 3.037 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.083 3.917 18 C -0.052 4.052 19 C -0.105 4.105 20 C -0.079 4.079 21 C -0.037 4.037 22 C 0.212 3.788 23 N -0.296 5.296 24 N -0.059 5.059 25 N -0.201 5.201 26 H 0.494 0.506 27 N -0.295 5.295 28 C -0.076 4.076 29 C -0.118 4.118 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.048 0.952 41 H -0.010 1.010 42 H -0.013 1.013 43 H 0.262 0.738 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.145 0.855 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 31.062 -4.827 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.059 4.059 4 C -0.081 4.081 5 N -0.253 5.253 6 C -0.065 4.065 7 C -0.120 4.120 8 C -0.005 4.005 9 C -0.575 4.575 10 H 0.073 0.927 11 C -0.199 4.199 12 N -0.573 5.573 13 Si 0.788 3.212 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.044 4.044 18 C -0.053 4.053 19 C -0.124 4.124 20 C -0.099 4.099 21 C -0.040 4.040 22 C -0.067 4.067 23 N -0.168 5.168 24 N -0.054 5.054 25 N -0.052 5.052 26 H 0.353 0.647 27 N -0.148 5.148 28 C -0.096 4.096 29 C -0.136 4.136 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.008 0.992 42 H 0.005 0.995 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.155 0.845 47 H 0.154 0.846 48 H 0.162 0.838 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.295 31.243 -5.052 31.675 hybrid contribution -1.086 -0.532 0.888 1.500 sum -2.381 30.711 -4.164 31.083 Atomic orbital electron populations 1.22832 0.80797 1.02735 1.00774 1.88141 1.20540 1.28412 1.95134 1.23499 0.95523 0.85252 1.01608 1.22436 0.91448 1.01393 0.92801 1.62222 1.59177 1.01951 1.01944 1.22194 0.99523 0.86693 0.98057 1.21319 0.98488 0.94745 0.97439 1.18894 0.94709 0.92144 0.94791 1.21719 1.28021 0.94467 1.13285 0.92688 1.25962 0.95907 0.99068 0.99000 1.70108 1.38160 1.10557 1.38507 0.85433 0.78376 0.78426 0.79008 1.18786 1.20329 1.20328 1.21182 0.97542 0.90771 0.94890 1.19977 0.94930 0.94569 0.95823 1.21112 0.95103 0.96577 0.99587 1.21224 0.99646 0.91719 0.97309 1.17358 0.96852 0.86554 1.03285 1.23884 0.91564 0.95285 0.96009 1.76081 1.16425 1.02802 1.21534 1.78858 1.11818 1.06148 1.08531 1.47793 1.12170 1.13776 1.31457 0.64686 1.74885 1.19907 0.96455 1.23542 1.21210 0.93578 0.97679 0.97139 1.21174 1.00923 0.91863 0.99668 0.92953 0.92828 0.90741 0.91657 0.91258 0.91203 0.87785 0.92365 0.92536 0.94155 0.93354 0.99162 0.99481 0.92906 0.92543 0.89628 0.84482 0.84562 0.83764 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.81 16 2 O -0.40 -11.89 7.58 -148.98 -1.13 -13.02 16 3 C 0.02 0.41 5.15 71.98 0.37 0.78 16 4 C 0.05 1.19 5.18 86.30 0.45 1.64 16 5 N -0.53 -14.81 4.75 -900.78 -4.28 -19.08 16 6 C 0.06 2.22 4.53 86.30 0.39 2.61 16 7 C -0.08 -3.60 5.02 30.59 0.15 -3.45 16 8 C 0.03 1.78 4.97 29.85 0.15 1.93 16 9 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 10 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 11 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 12 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 13 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 14 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 C 0.08 1.80 4.79 85.56 0.41 2.21 16 18 C -0.05 -0.98 4.89 -19.83 -0.10 -1.08 16 19 C -0.11 -2.02 9.68 22.24 0.22 -1.80 16 20 C -0.08 -1.50 9.70 22.48 0.22 -1.29 16 21 C -0.04 -0.70 5.88 -20.04 -0.12 -0.82 16 22 C 0.21 4.17 7.94 137.38 1.09 5.26 16 23 N -0.30 -6.33 12.23 -52.18 -0.64 -6.97 16 24 N -0.06 -0.99 13.47 37.02 0.50 -0.50 16 25 N -0.20 -2.16 7.90 37.02 0.29 -1.86 16 26 H 0.49 0.21 8.96 -347.53 -3.12 -2.91 16 27 N -0.30 -4.62 12.08 -52.13 -0.63 -5.25 16 28 C -0.08 -1.22 9.70 22.48 0.22 -1.01 16 29 C -0.12 -1.89 8.02 22.24 0.18 -1.71 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.25 4.39 -2.39 -0.01 1.24 16 35 H 0.07 2.14 5.80 -2.39 -0.01 2.13 16 36 H 0.10 2.21 6.56 -2.39 -0.02 2.20 16 37 H 0.06 2.17 5.29 -2.39 -0.01 2.16 16 38 H 0.06 2.03 8.05 -2.39 -0.02 2.01 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 2.13 6.10 -2.39 -0.01 2.11 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.06 1.14 5.66 -2.39 -0.01 1.13 16 45 H 0.09 1.85 7.95 -2.38 -0.02 1.83 16 46 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 47 H 0.14 2.47 7.89 -2.91 -0.02 2.45 16 48 H 0.14 1.87 7.88 -2.91 -0.02 1.84 16 49 H 0.14 1.78 6.11 -2.91 -0.02 1.76 16 Total: -1.00 -75.03 394.93 -0.13 -75.16 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -2.13 Total: 7.94 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 5.57 Total: -26.22 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -4.47 Total: -91.56 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.13 Total: -13.02 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.03 -0.13 -75.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736995713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.974 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds