Wall clock time and date at job start Wed Apr 1 2020 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99961 * 2 1 4 4 C 1.53002 * 109.47358 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47357 * 180.02562 * 4 3 2 6 6 C 1.37700 * 127.18423 * 91.43735 * 5 4 3 7 7 C 1.47226 * 126.50749 * 0.03872 * 6 5 4 8 8 C 1.36517 * 126.09444 * 163.25047 * 7 6 5 9 9 C 1.40341 * 107.33041 * 179.97438 * 8 7 6 10 10 C 1.35112 * 107.74738 * 0.02562 * 9 8 7 11 11 N 1.36353 * 108.53459 * 0.02562 * 10 9 8 12 12 H 0.96992 * 125.71194 * 180.02562 * 11 10 9 13 13 N 1.31477 * 106.99291 * 179.77547 * 6 5 4 14 14 N 1.28509 * 109.92699 * 0.23293 * 13 6 5 15 15 C 1.31298 * 110.15208 * 359.97438 * 14 13 6 16 16 N 1.38491 * 126.35204 * 180.02562 * 15 14 13 17 17 C 1.46849 * 111.00073 * 68.25508 * 16 15 14 18 18 C 1.53034 * 109.52442 * 174.15778 * 17 16 15 19 19 C 1.53120 * 109.27653 * 59.18237 * 18 17 16 20 20 C 1.50703 * 109.52485 * 182.43742 * 19 18 17 21 21 H 1.07995 * 119.99686 * 119.68019 * 20 19 18 22 22 C 1.37875 * 119.99882 * 299.68823 * 20 19 18 23 23 N 1.31515 * 120.00115 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99770 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47359 * 59.99731 * 24 22 20 26 26 H 1.48503 * 109.47069 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47186 * 299.99379 * 24 22 20 28 28 C 1.53114 * 109.16144 * 302.34742 * 19 18 17 29 29 C 1.46843 * 110.99940 * 304.05118 * 16 15 14 30 30 H 1.08996 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47165 * 300.00298 * 1 2 3 32 32 H 1.08996 * 109.47648 * 59.99764 * 1 2 3 33 33 H 1.09000 * 109.47079 * 59.99941 * 3 2 1 34 34 H 1.09001 * 109.47292 * 300.00278 * 3 2 1 35 35 H 1.08996 * 109.46778 * 59.99894 * 4 3 2 36 36 H 1.08999 * 109.46541 * 299.99629 * 4 3 2 37 37 H 1.07995 * 126.33744 * 0.25573 * 8 7 6 38 38 H 1.07995 * 126.13338 * 180.02562 * 9 8 7 39 39 H 1.07994 * 125.73349 * 180.02562 * 10 9 8 40 40 H 1.08999 * 109.46364 * 294.17853 * 17 16 15 41 41 H 1.09003 * 109.45814 * 54.14540 * 17 16 15 42 42 H 1.08999 * 109.50638 * 299.24242 * 18 17 16 43 43 H 1.09006 * 109.50148 * 179.12217 * 18 17 16 44 44 H 1.09005 * 109.52242 * 62.25407 * 19 18 17 45 45 H 0.97005 * 120.00001 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.50316 * 297.70879 * 28 19 18 47 47 H 1.08998 * 109.50633 * 177.59490 * 28 19 18 48 48 H 1.09003 * 109.46259 * 305.85109 * 29 16 15 49 49 H 1.08998 * 109.46942 * 65.82190 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 4.4953 3.2715 1.0970 7 6 4.3608 2.8782 2.5094 8 6 4.9966 3.4573 3.5696 9 6 4.5845 2.7778 4.7263 10 6 3.7183 1.8117 4.3497 11 7 3.5742 1.8628 2.9948 12 1 3.0095 1.2804 2.4632 13 7 4.9912 4.4017 0.6438 14 7 4.9571 4.4109 -0.6408 15 6 4.4394 3.2902 -1.0877 16 7 4.2460 2.9472 -2.4155 17 6 5.5298 2.7400 -3.0978 18 6 5.2776 2.2230 -4.5159 19 6 4.4297 3.2420 -5.2822 20 6 4.1277 2.7114 -6.6600 21 1 3.1038 2.5562 -6.9663 22 6 5.1585 2.4241 -7.5294 23 7 6.4054 2.6135 -7.1564 24 14 4.7841 1.7657 -9.2369 25 1 3.9551 2.7510 -9.9766 26 1 6.0556 1.5398 -9.9701 27 1 4.0440 0.4834 -9.1218 28 6 3.1195 3.4761 -4.5254 29 6 3.4342 3.9568 -3.1069 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6437 0.8892 37 1 5.6854 4.2880 3.5267 38 1 4.9027 2.9891 5.7364 39 1 3.2232 1.1159 5.0108 40 1 6.0718 3.6844 -3.1466 41 1 6.1212 2.0101 -2.5449 42 1 4.7477 1.2716 -4.4676 43 1 6.2302 2.0841 -5.0274 44 1 4.9758 4.1818 -5.3645 45 1 7.1306 2.4116 -7.7682 46 1 2.5556 2.5445 -4.4772 47 1 2.5300 4.2325 -5.0435 48 1 2.5035 4.1107 -2.5608 49 1 3.9860 4.8955 -3.1557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802483736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:21 Heat of formation + Delta-G solvation = 73.873197 kcal Electronic energy + Delta-G solvation = -30996.736948 eV Core-core repulsion = 26960.697780 eV Total energy + Delta-G solvation = -4036.039168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.16713 -41.90887 -39.95667 -39.21337 -36.47143 -35.88957 -33.53908 -32.16367 -31.84663 -31.63906 -30.98484 -28.91807 -27.58050 -27.33035 -24.96647 -24.46975 -23.92297 -23.65359 -22.25905 -21.67671 -21.02155 -20.33803 -19.38647 -18.49460 -18.23638 -17.83645 -17.38775 -17.21576 -16.79379 -16.47486 -16.05485 -15.71595 -15.56503 -15.09949 -15.06216 -14.79525 -14.62255 -14.46181 -14.34798 -14.17684 -13.60475 -13.52155 -13.28412 -13.15929 -13.01112 -12.83842 -12.82450 -12.76736 -12.45774 -12.40331 -12.17153 -12.01814 -11.88408 -11.46694 -11.45294 -10.98107 -10.89368 -10.80607 -10.70560 -10.39577 -9.93974 -9.90993 -8.89592 -8.07265 -6.20362 0.03517 0.81431 1.10284 1.44150 1.44639 1.52196 1.74426 1.98255 2.16338 2.36919 2.45304 2.80137 3.20166 3.20822 3.30869 3.61525 3.78190 3.85201 3.91501 4.04443 4.09723 4.27591 4.32933 4.35760 4.40283 4.44009 4.45383 4.46466 4.51462 4.54898 4.62325 4.65527 4.76453 4.81787 4.84559 4.96566 5.08555 5.18206 5.21359 5.28961 5.38975 5.50841 5.59300 5.69685 5.84398 5.89601 5.94892 5.98155 6.10807 6.15238 6.38035 6.47275 6.90493 7.45025 7.47805 8.97666 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002801 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.669484 B = 9994.974906 C =11170.218073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.057 3.943 4 C 0.109 3.891 5 N -0.463 5.463 6 C 0.259 3.741 7 C 0.035 3.965 8 C -0.132 4.132 9 C -0.214 4.214 10 C 0.039 3.961 11 N -0.552 5.552 12 H 0.420 0.580 13 N -0.301 5.301 14 N -0.336 5.336 15 C 0.359 3.641 16 N -0.455 5.455 17 C 0.083 3.917 18 C -0.089 4.089 19 C 0.043 3.957 20 C -0.529 4.529 21 H 0.056 0.944 22 C 0.013 3.987 23 N -0.918 5.918 24 Si 0.952 3.048 25 H -0.273 1.273 26 H -0.288 1.288 27 H -0.270 1.270 28 C -0.093 4.093 29 C 0.081 3.919 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.216 0.784 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.070 0.930 44 H -0.010 1.010 45 H 0.260 0.740 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 -7.304 24.452 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.021 4.021 4 C -0.014 4.014 5 N -0.158 5.158 6 C -0.005 4.005 7 C -0.077 4.077 8 C -0.161 4.161 9 C -0.238 4.238 10 C -0.095 4.095 11 N -0.151 5.151 12 H 0.260 0.740 13 N -0.142 5.142 14 N -0.179 5.179 15 C 0.002 3.998 16 N -0.181 5.181 17 C -0.044 4.044 18 C -0.127 4.127 19 C 0.024 3.976 20 C -0.567 4.567 21 H 0.074 0.926 22 C -0.186 4.186 23 N -0.558 5.558 24 Si 0.778 3.222 25 H -0.198 1.198 26 H -0.213 1.213 27 H -0.195 1.195 28 C -0.131 4.131 29 C -0.046 4.046 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.184 0.816 39 H 0.232 0.768 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.008 0.992 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.653 -6.669 24.181 27.252 hybrid contribution -0.218 -0.535 -1.742 1.835 sum -10.871 -7.205 22.438 25.953 Atomic orbital electron populations 1.23032 0.78362 1.04606 1.01108 1.87796 1.22203 1.25729 1.95638 1.22587 0.91621 0.86225 1.01680 1.21786 0.93235 0.79217 1.07115 1.46398 1.47705 1.16457 1.05191 1.22094 1.01443 0.89524 0.87482 1.16816 1.05561 0.98994 0.86338 1.21229 1.01930 1.01605 0.91310 1.21223 1.03628 0.99689 0.99215 1.22793 1.02036 1.02467 0.82172 1.42329 1.36739 1.27331 1.08686 0.73997 1.74386 1.19940 1.17289 1.02576 1.74634 1.19868 1.19587 1.03830 1.22522 0.99866 0.88257 0.89153 1.58890 1.18748 1.45659 0.94812 1.22137 0.87021 0.99314 0.95939 1.21454 1.02146 0.98579 0.90554 1.18675 0.91991 0.93648 0.93242 1.21484 0.92776 1.43268 0.99167 0.92552 1.25727 0.94987 0.95916 1.01920 1.70001 0.99191 1.49598 1.36988 0.85702 0.77248 0.79060 0.80168 1.19831 1.21328 1.19487 1.21553 0.98737 1.00807 0.91967 1.22096 0.95879 0.91332 0.95255 0.87385 0.92326 0.93750 0.92024 0.92704 0.86964 0.86703 0.84315 0.81578 0.76787 0.95635 0.91378 0.93674 0.91158 0.99153 0.93082 0.91743 0.91588 0.90123 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.72 10.70 -148.98 -1.59 -8.32 16 3 C 0.06 1.02 5.87 71.98 0.42 1.45 16 4 C 0.11 2.25 5.83 86.38 0.50 2.75 16 5 N -0.46 -12.99 2.84 -517.01 -1.47 -14.46 16 6 C 0.26 7.65 7.90 135.92 1.07 8.72 16 7 C 0.04 0.80 6.89 40.25 0.28 1.08 16 8 C -0.13 -2.80 10.80 22.38 0.24 -2.55 16 9 C -0.21 -2.99 10.83 22.06 0.24 -2.76 16 10 C 0.04 0.40 11.93 83.27 0.99 1.40 16 11 N -0.55 -8.02 5.63 -184.00 -1.04 -9.06 16 12 H 0.42 4.71 5.74 -92.71 -0.53 4.18 16 13 N -0.30 -11.01 12.23 -51.08 -0.62 -11.64 16 14 N -0.34 -13.29 12.10 -57.92 -0.70 -13.99 16 15 C 0.36 12.56 6.45 260.04 1.68 14.24 16 16 N -0.45 -16.43 4.67 -706.02 -3.29 -19.72 16 17 C 0.08 3.36 5.39 86.32 0.47 3.83 16 18 C -0.09 -4.14 5.12 30.65 0.16 -3.99 16 19 C 0.04 2.12 2.16 -11.46 -0.02 2.10 16 20 C -0.53 -28.46 8.56 25.60 0.22 -28.24 16 21 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 22 C 0.01 0.71 5.31 84.65 0.45 1.16 16 23 N -0.92 -52.72 11.37 21.45 0.24 -52.48 16 24 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 C -0.09 -3.70 5.32 30.65 0.16 -3.54 16 29 C 0.08 2.96 5.31 86.33 0.46 3.42 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.93 7.39 -2.39 -0.02 0.91 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.11 1.81 6.36 -2.39 -0.02 1.80 16 37 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.22 0.28 8.06 -2.91 -0.02 0.25 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 42 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 3.73 6.18 -2.38 -0.01 3.71 16 44 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 45 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 46 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.08 2.58 8.10 -2.39 -0.02 2.56 16 49 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -69.61 396.75 2.54 -67.07 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.43 Total: 16.88 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 8.56 Total: 0.60 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -6.88 Total: -121.35 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -1.59 Total: -8.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.61 2.54 -67.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802483736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.940 kcal (2) G-P(sol) polarization free energy of solvation -69.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds