Wall clock time and date at job start Wed Apr 1 2020 03:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99789 * 2 1 4 4 C 1.53003 * 109.47009 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47143 * 179.97438 * 4 3 2 6 6 C 1.37703 * 127.18022 * 88.05699 * 5 4 3 7 7 C 1.47225 * 126.50256 * 0.02562 * 6 5 4 8 8 C 1.36526 * 126.08962 * 165.00344 * 7 6 5 9 9 C 1.40335 * 107.32806 * 179.73686 * 8 7 6 10 10 C 1.35108 * 107.74907 * 0.26187 * 9 8 7 11 11 N 1.36348 * 108.53573 * 0.02562 * 10 9 8 12 12 H 0.96998 * 125.71028 * 180.02562 * 11 10 9 13 13 N 1.31477 * 106.98984 * 180.28090 * 6 5 4 14 14 N 1.28501 * 109.92875 * 359.55552 * 13 6 5 15 15 C 1.31297 * 110.15603 * 0.45770 * 14 13 6 16 16 N 1.38485 * 126.35897 * 179.70819 * 15 14 13 17 17 C 1.46894 * 111.00195 * 106.92361 * 16 15 14 18 18 C 1.50702 * 109.47282 * 298.73064 * 17 16 15 19 19 H 1.07999 * 119.99974 * 4.95100 * 18 17 16 20 20 C 1.37875 * 120.00071 * 184.95570 * 18 17 16 21 21 N 1.31516 * 120.00218 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99886 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47227 * 89.99695 * 22 20 18 24 24 H 1.48499 * 109.46900 * 209.99488 * 22 20 18 25 25 H 1.48497 * 109.46710 * 329.99381 * 22 20 18 26 26 C 1.46897 * 110.99848 * 342.96623 * 16 15 14 27 27 C 1.52994 * 109.47403 * 195.13133 * 26 16 15 28 28 C 1.53001 * 117.50291 * 243.26311 * 27 26 16 29 29 C 1.52999 * 117.50285 * 174.59933 * 27 26 16 30 30 H 1.08998 * 109.47234 * 60.00623 * 1 2 3 31 31 H 1.09003 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47761 * 300.00096 * 1 2 3 33 33 H 1.09005 * 109.47441 * 59.99924 * 3 2 1 34 34 H 1.08994 * 109.47272 * 299.99371 * 3 2 1 35 35 H 1.09005 * 109.46772 * 59.99893 * 4 3 2 36 36 H 1.08998 * 109.47362 * 300.00137 * 4 3 2 37 37 H 1.08005 * 126.33361 * 359.97438 * 8 7 6 38 38 H 1.08002 * 126.12501 * 180.28055 * 9 8 7 39 39 H 1.07999 * 125.73222 * 179.97438 * 10 9 8 40 40 H 1.08997 * 109.47526 * 58.73233 * 17 16 15 41 41 H 1.09001 * 109.47406 * 178.72886 * 17 16 15 42 42 H 0.97000 * 119.99765 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.47603 * 315.13586 * 26 16 15 44 44 H 1.09007 * 109.47233 * 75.13637 * 26 16 15 45 45 H 1.09007 * 115.54765 * 28.93240 * 27 26 16 46 46 H 1.08994 * 117.50198 * 359.97438 * 28 27 26 47 47 H 1.08998 * 117.49977 * 145.02382 * 28 27 26 48 48 H 1.08997 * 117.50229 * 214.98327 * 29 27 26 49 49 H 1.09000 * 117.49746 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.4353 3.2991 1.0962 7 6 4.2233 2.9413 2.5085 8 6 4.7745 3.5688 3.5885 9 6 4.3054 2.9131 4.7372 10 6 3.4939 1.9100 4.3364 11 7 3.4392 1.9147 2.9740 12 1 2.9279 1.2993 2.4257 13 7 4.9458 4.4223 0.6419 14 7 4.9888 4.3962 -0.6421 15 6 4.5009 3.2618 -1.0881 16 7 4.3825 2.8843 -2.4153 17 6 5.3764 1.8597 -2.7619 18 6 6.7625 2.4182 -2.5669 19 1 6.8932 3.4036 -2.1448 20 6 7.8638 1.6710 -2.9275 21 7 7.7047 0.4708 -3.4411 22 14 9.5819 2.3630 -2.6851 23 1 10.0802 1.9901 -1.3368 24 1 10.4901 1.8065 -3.7198 25 1 9.5412 3.8425 -2.8062 26 6 4.4932 4.0477 -3.3053 27 6 3.9912 3.6718 -4.7008 28 6 4.9989 3.7202 -5.8510 29 6 3.9061 4.7868 -5.7451 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3635 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 5.4443 4.4157 3.5636 38 1 4.5491 3.1654 5.7586 39 1 2.9763 1.2197 4.9860 40 1 5.2413 0.9901 -2.1188 41 1 5.2466 1.5651 -3.8032 42 1 8.4795 -0.0549 -3.6944 43 1 3.8909 4.8658 -2.9107 44 1 5.5356 4.3606 -3.3664 45 1 3.2285 2.8936 -4.7323 46 1 6.0195 4.0201 -5.6137 47 1 4.8991 2.9741 -6.6394 48 1 3.0878 4.7419 -6.4638 49 1 4.2082 5.7880 -5.4381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812145594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:17 Heat of formation + Delta-G solvation = 123.212741 kcal Electronic energy + Delta-G solvation = -31494.411033 eV Core-core repulsion = 27460.511388 eV Total energy + Delta-G solvation = -4033.899645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44459 -40.81074 -38.28693 -37.89922 -35.65005 -34.88637 -32.62903 -31.03184 -30.70680 -29.82239 -27.85408 -27.31002 -26.58623 -25.43236 -23.84199 -22.61127 -22.25260 -21.85976 -20.96738 -20.28543 -19.98487 -19.31781 -18.08289 -17.03972 -16.75204 -16.30382 -16.01425 -15.84331 -15.59670 -15.11565 -14.75405 -14.48368 -14.32400 -14.07535 -13.81922 -13.65497 -13.38655 -13.13381 -12.76866 -12.53409 -12.41237 -12.17299 -11.96721 -11.79429 -11.64717 -11.35445 -11.24074 -11.05801 -11.04136 -10.78096 -10.62113 -10.30159 -10.12177 -10.03138 -9.90064 -9.84381 -9.75633 -9.36263 -9.28253 -8.92069 -8.54886 -8.11972 -7.28301 -6.17050 -4.24082 1.54930 2.37974 2.59121 3.04155 3.06241 3.26131 3.32698 3.39537 3.57345 3.65464 4.22309 4.35973 4.44839 4.54500 4.61535 4.68332 4.90167 5.04199 5.06831 5.09560 5.17413 5.27055 5.30999 5.38010 5.41094 5.43722 5.46145 5.49191 5.59353 5.71774 5.84076 5.95391 6.01967 6.12983 6.19385 6.34948 6.38425 6.43116 6.49154 6.63606 6.72640 6.83520 6.86900 6.93317 7.02926 7.12042 7.24161 7.40462 7.49122 7.78581 7.96219 8.06139 8.84235 9.27378 9.44023 10.89646 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008612 B = 0.004282 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.465836 B = 6537.696406 C = 7830.785322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.047 3.953 4 C 0.111 3.889 5 N -0.478 5.478 6 C 0.215 3.785 7 C 0.090 3.910 8 C -0.138 4.138 9 C -0.199 4.199 10 C -0.001 4.001 11 N -0.561 5.561 12 H 0.411 0.589 13 N -0.256 5.256 14 N -0.324 5.324 15 C 0.423 3.577 16 N -0.467 5.467 17 C 0.193 3.807 18 C -0.552 4.552 19 H 0.069 0.931 20 C 0.072 3.928 21 N -0.889 5.889 22 Si 0.890 3.110 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.270 1.270 26 C 0.107 3.893 27 C -0.135 4.135 28 C -0.168 4.168 29 C -0.186 4.186 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.168 0.832 40 H 0.026 0.974 41 H 0.059 0.941 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 -0.249 7.905 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.031 4.031 4 C -0.013 4.013 5 N -0.175 5.175 6 C -0.049 4.049 7 C -0.023 4.023 8 C -0.165 4.165 9 C -0.224 4.224 10 C -0.133 4.133 11 N -0.159 5.159 12 H 0.250 0.750 13 N -0.096 5.096 14 N -0.169 5.169 15 C 0.068 3.932 16 N -0.191 5.191 17 C 0.070 3.930 18 C -0.591 4.591 19 H 0.087 0.913 20 C -0.132 4.132 21 N -0.527 5.527 22 Si 0.717 3.283 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.195 1.195 26 C -0.020 4.020 27 C -0.154 4.154 28 C -0.205 4.205 29 C -0.224 4.224 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.185 0.815 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.053 0.475 7.569 15.968 hybrid contribution 0.731 -1.076 -0.103 1.305 sum -13.321 -0.601 7.466 15.283 Atomic orbital electron populations 1.22794 0.80190 1.03103 1.00305 1.87832 1.20342 1.26573 1.95534 1.22823 0.93147 0.85494 1.01621 1.21579 0.91585 0.81564 1.06597 1.45940 1.49644 1.15738 1.06186 1.21398 1.06888 0.90562 0.86019 1.17007 1.02237 0.95041 0.87993 1.20952 1.03387 1.02227 0.89970 1.20840 1.03558 0.99252 0.98767 1.21918 1.05575 1.03328 0.82497 1.42327 1.39331 1.26854 1.07426 0.75036 1.74292 1.15784 1.16124 1.03446 1.74697 1.20687 1.19267 1.02254 1.22569 0.94279 0.88226 0.88161 1.59352 1.50492 1.14083 0.95155 1.20006 0.86950 0.87776 0.98307 1.21722 0.91160 1.03349 1.42872 0.91289 1.24869 0.99268 0.94669 0.94361 1.69927 1.30708 1.10168 1.41899 0.86603 0.83993 0.79737 0.77935 1.20621 1.21053 1.19494 1.21463 1.01809 0.89818 0.88925 1.22103 1.02132 1.00761 0.90370 1.22981 0.95830 1.00919 1.00736 1.22949 1.01927 0.95013 1.02513 0.93561 0.89109 0.94059 0.93492 0.91144 0.86084 0.89323 0.83567 0.84142 0.81518 0.95608 0.92354 0.92663 0.91439 0.90940 0.87842 0.88330 0.89402 0.89432 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.54 10.70 -35.23 -0.38 -4.91 16 3 C 0.05 0.59 5.80 37.16 0.22 0.80 16 4 C 0.11 1.69 5.74 -4.04 -0.02 1.66 16 5 N -0.48 -8.86 2.84 -114.76 -0.33 -9.19 16 6 C 0.22 4.09 7.90 -153.74 -1.21 2.87 16 7 C 0.09 1.43 6.91 -82.38 -0.57 0.86 16 8 C -0.14 -2.03 10.80 -39.41 -0.43 -2.45 16 9 C -0.20 -2.33 10.83 -39.91 -0.43 -2.76 16 10 C 0.00 -0.01 11.93 -16.66 -0.20 -0.21 16 11 N -0.56 -6.90 5.68 -9.51 -0.05 -6.96 16 12 H 0.41 4.45 5.41 -40.82 -0.22 4.23 16 13 N -0.26 -5.53 12.22 32.50 0.40 -5.14 16 14 N -0.32 -7.38 10.97 30.34 0.33 -7.05 16 15 C 0.42 8.95 5.83 -318.68 -1.86 7.09 16 16 N -0.47 -9.61 4.70 -175.85 -0.83 -10.43 16 17 C 0.19 4.59 4.83 -4.98 -0.02 4.57 16 18 C -0.55 -14.76 7.53 -34.44 -0.26 -15.02 16 19 H 0.07 1.95 6.42 -52.49 -0.34 1.61 16 20 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 21 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.11 2.07 4.56 -3.83 -0.02 2.05 16 27 C -0.13 -2.26 5.03 -90.62 -0.46 -2.71 16 28 C -0.17 -2.75 10.18 -26.69 -0.27 -3.02 16 29 C -0.19 -2.63 10.25 -26.69 -0.27 -2.90 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.53 7.18 -51.93 -0.37 0.16 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.12 2.05 6.15 -51.93 -0.32 1.73 16 36 H 0.09 1.22 6.53 -51.93 -0.34 0.88 16 37 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.03 0.65 6.23 -51.93 -0.32 0.33 16 41 H 0.06 1.46 7.40 -51.93 -0.38 1.08 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.07 1.27 7.82 -51.93 -0.41 0.86 16 44 H 0.07 1.60 6.21 -51.92 -0.32 1.27 16 45 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.10 1.78 8.03 -51.93 -0.42 1.36 16 47 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 48 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -31.38 400.85 -11.12 -42.50 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.23 Total: 8.52 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -4.79 Total: -5.90 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.26 Total: -63.01 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.38 -11.12 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812145594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.710 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds