Wall clock time and date at job start Wed Apr 1 2020 03:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99789 * 2 1 4 4 C 1.53003 * 109.47009 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47143 * 179.97438 * 4 3 2 6 6 C 1.37703 * 127.18022 * 88.05699 * 5 4 3 7 7 C 1.47225 * 126.50256 * 0.02562 * 6 5 4 8 8 C 1.36526 * 126.08962 * 165.00344 * 7 6 5 9 9 C 1.40335 * 107.32806 * 179.73686 * 8 7 6 10 10 C 1.35108 * 107.74907 * 0.26187 * 9 8 7 11 11 N 1.36348 * 108.53573 * 0.02562 * 10 9 8 12 12 H 0.96998 * 125.71028 * 180.02562 * 11 10 9 13 13 N 1.31477 * 106.98984 * 180.28090 * 6 5 4 14 14 N 1.28501 * 109.92875 * 359.55552 * 13 6 5 15 15 C 1.31297 * 110.15603 * 0.45770 * 14 13 6 16 16 N 1.38485 * 126.35897 * 179.70819 * 15 14 13 17 17 C 1.46894 * 111.00195 * 106.92361 * 16 15 14 18 18 C 1.50702 * 109.47282 * 298.73064 * 17 16 15 19 19 H 1.07999 * 119.99974 * 4.95100 * 18 17 16 20 20 C 1.37875 * 120.00071 * 184.95570 * 18 17 16 21 21 N 1.31516 * 120.00218 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99886 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47227 * 89.99695 * 22 20 18 24 24 H 1.48499 * 109.46900 * 209.99488 * 22 20 18 25 25 H 1.48497 * 109.46710 * 329.99381 * 22 20 18 26 26 C 1.46897 * 110.99848 * 342.96623 * 16 15 14 27 27 C 1.52994 * 109.47403 * 195.13133 * 26 16 15 28 28 C 1.53001 * 117.50291 * 243.26311 * 27 26 16 29 29 C 1.52999 * 117.50285 * 174.59933 * 27 26 16 30 30 H 1.08998 * 109.47234 * 60.00623 * 1 2 3 31 31 H 1.09003 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47761 * 300.00096 * 1 2 3 33 33 H 1.09005 * 109.47441 * 59.99924 * 3 2 1 34 34 H 1.08994 * 109.47272 * 299.99371 * 3 2 1 35 35 H 1.09005 * 109.46772 * 59.99893 * 4 3 2 36 36 H 1.08998 * 109.47362 * 300.00137 * 4 3 2 37 37 H 1.08005 * 126.33361 * 359.97438 * 8 7 6 38 38 H 1.08002 * 126.12501 * 180.28055 * 9 8 7 39 39 H 1.07999 * 125.73222 * 179.97438 * 10 9 8 40 40 H 1.08997 * 109.47526 * 58.73233 * 17 16 15 41 41 H 1.09001 * 109.47406 * 178.72886 * 17 16 15 42 42 H 0.97000 * 119.99765 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.47603 * 315.13586 * 26 16 15 44 44 H 1.09007 * 109.47233 * 75.13637 * 26 16 15 45 45 H 1.09007 * 115.54765 * 28.93240 * 27 26 16 46 46 H 1.08994 * 117.50198 * 359.97438 * 28 27 26 47 47 H 1.08998 * 117.49977 * 145.02382 * 28 27 26 48 48 H 1.08997 * 117.50229 * 214.98327 * 29 27 26 49 49 H 1.09000 * 117.49746 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.4353 3.2991 1.0962 7 6 4.2233 2.9413 2.5085 8 6 4.7745 3.5688 3.5885 9 6 4.3054 2.9131 4.7372 10 6 3.4939 1.9100 4.3364 11 7 3.4392 1.9147 2.9740 12 1 2.9279 1.2993 2.4257 13 7 4.9458 4.4223 0.6419 14 7 4.9888 4.3962 -0.6421 15 6 4.5009 3.2618 -1.0881 16 7 4.3825 2.8843 -2.4153 17 6 5.3764 1.8597 -2.7619 18 6 6.7625 2.4182 -2.5669 19 1 6.8932 3.4036 -2.1448 20 6 7.8638 1.6710 -2.9275 21 7 7.7047 0.4708 -3.4411 22 14 9.5819 2.3630 -2.6851 23 1 10.0802 1.9901 -1.3368 24 1 10.4901 1.8065 -3.7198 25 1 9.5412 3.8425 -2.8062 26 6 4.4932 4.0477 -3.3053 27 6 3.9912 3.6718 -4.7008 28 6 4.9989 3.7202 -5.8510 29 6 3.9061 4.7868 -5.7451 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3635 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 5.4443 4.4157 3.5636 38 1 4.5491 3.1654 5.7586 39 1 2.9763 1.2197 4.9860 40 1 5.2413 0.9901 -2.1188 41 1 5.2466 1.5651 -3.8032 42 1 8.4795 -0.0549 -3.6944 43 1 3.8909 4.8658 -2.9107 44 1 5.5356 4.3606 -3.3664 45 1 3.2285 2.8936 -4.7323 46 1 6.0195 4.0201 -5.6137 47 1 4.8991 2.9741 -6.6394 48 1 3.0878 4.7419 -6.4638 49 1 4.2082 5.7880 -5.4381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812145594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:16 Heat of formation + Delta-G solvation = 105.694859 kcal Electronic energy + Delta-G solvation = -31495.170665 eV Core-core repulsion = 27460.511388 eV Total energy + Delta-G solvation = -4034.659277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.95628 -41.85574 -39.44594 -39.21166 -37.12558 -36.24802 -34.69626 -32.21121 -31.88893 -31.02501 -29.60392 -28.71575 -27.42271 -27.12804 -25.18522 -24.22808 -23.63529 -23.12468 -22.14888 -21.56882 -21.23981 -20.66105 -19.29805 -18.74792 -18.14871 -17.47128 -17.35418 -17.24491 -16.93637 -16.56807 -16.21540 -15.89421 -15.52211 -15.32995 -15.00031 -14.77269 -14.72839 -14.58300 -14.29395 -13.73270 -13.55295 -13.44780 -13.24125 -13.15088 -13.12405 -12.90700 -12.74135 -12.51291 -12.41893 -12.36267 -12.30209 -12.11409 -12.00573 -11.51551 -11.29247 -11.19315 -10.92658 -10.84884 -10.74121 -10.66259 -9.92025 -9.62226 -8.69466 -8.27881 -6.40996 0.23960 0.98272 1.26761 1.29896 1.33574 1.40932 1.86942 2.04685 2.23326 2.30524 2.54865 2.89496 3.01535 3.09231 3.26323 3.39099 3.62689 3.84985 3.95353 3.99729 4.04426 4.07658 4.22025 4.26631 4.33570 4.41533 4.46121 4.47869 4.51401 4.57014 4.61314 4.73617 4.80782 4.83867 4.91747 4.94390 5.04234 5.11190 5.21120 5.23538 5.33457 5.34454 5.37264 5.51851 5.64462 5.74750 5.89087 5.91266 5.97295 6.00689 6.33182 6.51212 6.71691 7.28504 7.69718 8.76655 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008612 B = 0.004282 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.465836 B = 6537.696406 C = 7830.785322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.064 3.936 4 C 0.108 3.892 5 N -0.476 5.476 6 C 0.237 3.763 7 C 0.044 3.956 8 C -0.141 4.141 9 C -0.211 4.211 10 C 0.033 3.967 11 N -0.553 5.553 12 H 0.418 0.582 13 N -0.299 5.299 14 N -0.353 5.353 15 C 0.401 3.599 16 N -0.454 5.454 17 C 0.213 3.787 18 C -0.555 4.555 19 H 0.048 0.952 20 C 0.032 3.968 21 N -0.911 5.911 22 Si 0.939 3.061 23 H -0.282 1.282 24 H -0.271 1.271 25 H -0.276 1.276 26 C 0.115 3.885 27 C -0.150 4.150 28 C -0.181 4.181 29 C -0.151 4.151 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.168 0.832 39 H 0.217 0.783 40 H 0.012 0.988 41 H 0.046 0.954 42 H 0.267 0.733 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.098 0.902 48 H 0.118 0.882 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.282 -1.249 9.691 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.015 4.015 5 N -0.172 5.172 6 C -0.028 4.028 7 C -0.069 4.069 8 C -0.170 4.170 9 C -0.235 4.235 10 C -0.100 4.100 11 N -0.153 5.153 12 H 0.258 0.742 13 N -0.139 5.139 14 N -0.197 5.197 15 C 0.044 3.956 16 N -0.177 5.177 17 C 0.089 3.911 18 C -0.594 4.594 19 H 0.067 0.933 20 C -0.169 4.169 21 N -0.550 5.550 22 Si 0.765 3.235 23 H -0.209 1.209 24 H -0.195 1.195 25 H -0.201 1.201 26 C -0.012 4.012 27 C -0.168 4.168 28 C -0.218 4.218 29 C -0.189 4.189 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.186 0.814 39 H 0.233 0.767 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.127 0.873 46 H 0.092 0.908 47 H 0.116 0.884 48 H 0.136 0.864 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.028 -0.524 9.342 18.559 hybrid contribution 1.275 -0.802 -0.437 1.568 sum -14.753 -1.326 8.905 17.283 Atomic orbital electron populations 1.23057 0.78170 1.04670 1.01247 1.87814 1.22453 1.25767 1.95653 1.22532 0.90975 0.86104 1.01799 1.21725 0.93639 0.79845 1.06262 1.46093 1.49317 1.16464 1.05374 1.21980 1.03934 0.89509 0.87413 1.16891 1.05688 0.97879 0.86418 1.21182 1.02741 1.01838 0.91197 1.21187 1.03863 0.99383 0.99071 1.22771 1.03195 1.02360 0.81721 1.42350 1.38642 1.25919 1.08340 0.74176 1.74198 1.18578 1.18115 1.03035 1.74560 1.21379 1.20568 1.03199 1.22625 0.95547 0.88789 0.88646 1.59344 1.49042 1.13913 0.95409 1.19589 0.86468 0.88068 0.96994 1.21814 0.92833 1.02422 1.42287 0.93337 1.25452 1.02044 0.95026 0.94410 1.69985 1.31558 1.10834 1.42648 0.85842 0.80952 0.78758 0.77924 1.20860 1.19537 1.20126 1.21386 0.99886 0.89573 0.90405 1.22055 1.02697 1.02938 0.89139 1.22946 0.95112 1.02827 1.00925 1.23047 1.01038 0.94107 1.00669 0.93441 0.87282 0.92306 0.91912 0.92319 0.88237 0.87729 0.84638 0.81436 0.76692 0.97030 0.93641 0.92375 0.91154 0.94306 0.87281 0.90794 0.88392 0.86350 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.59 16 2 O -0.40 -8.74 10.70 -148.98 -1.59 -10.33 16 3 C 0.06 1.54 5.80 71.98 0.42 1.96 16 4 C 0.11 3.32 5.74 86.38 0.50 3.81 16 5 N -0.48 -18.20 2.84 -517.00 -1.47 -19.67 16 6 C 0.24 9.21 7.90 135.92 1.07 10.28 16 7 C 0.04 1.36 6.91 40.25 0.28 1.64 16 8 C -0.14 -4.01 10.80 22.38 0.24 -3.77 16 9 C -0.21 -4.23 10.83 22.06 0.24 -4.00 16 10 C 0.03 0.54 11.93 83.27 0.99 1.53 16 11 N -0.55 -12.10 5.68 -184.00 -1.04 -13.15 16 12 H 0.42 7.84 5.41 -92.71 -0.50 7.34 16 13 N -0.30 -13.58 12.22 -51.08 -0.62 -14.21 16 14 N -0.35 -16.98 10.97 -57.92 -0.64 -17.61 16 15 C 0.40 17.78 5.83 260.04 1.52 19.30 16 16 N -0.45 -19.60 4.70 -710.26 -3.34 -22.94 16 17 C 0.21 10.66 4.83 85.56 0.41 11.07 16 18 C -0.55 -30.98 7.53 25.60 0.19 -30.78 16 19 H 0.05 2.89 6.42 -2.91 -0.02 2.88 16 20 C 0.03 1.79 5.46 84.65 0.46 2.25 16 21 N -0.91 -52.20 13.29 21.45 0.28 -51.92 16 22 Si 0.94 45.77 29.54 68.60 2.03 47.80 16 23 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 26 C 0.11 4.66 4.56 86.30 0.39 5.05 16 27 C -0.15 -5.07 5.03 -10.80 -0.05 -5.13 16 28 C -0.18 -6.01 10.18 30.62 0.31 -5.70 16 29 C -0.15 -4.07 10.25 30.62 0.31 -3.75 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 1.31 7.18 -2.38 -0.02 1.30 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 3.51 6.15 -2.38 -0.01 3.50 16 36 H 0.10 2.81 6.53 -2.39 -0.02 2.79 16 37 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 38 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.01 0.62 6.23 -2.39 -0.01 0.60 16 41 H 0.05 2.38 7.40 -2.39 -0.02 2.37 16 42 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.07 2.77 7.82 -2.39 -0.02 2.75 16 44 H 0.04 1.83 6.21 -2.38 -0.01 1.81 16 45 H 0.11 3.58 8.14 -2.38 -0.02 3.57 16 46 H 0.07 2.81 8.03 -2.39 -0.02 2.79 16 47 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 48 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 49 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -71.93 400.85 2.61 -69.31 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.47 Total: 27.35 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 8.54 Total: 5.37 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -6.83 Total: -139.50 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.59 Total: -10.33 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.93 2.61 -69.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812145594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.010 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds