Wall clock time and date at job start Wed Apr 1 2020 03:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99791 * 2 1 4 4 C 1.46894 * 111.00355 * 123.95533 * 2 1 3 5 5 C 1.52995 * 109.47357 * 66.04967 * 4 2 1 6 6 C 1.53002 * 109.47427 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47088 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99537 * 269.99330 * 7 6 5 9 9 C 1.50699 * 109.47106 * 270.00004 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99839 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47213 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47238 * 119.99905 * 13 11 9 16 16 H 1.48504 * 109.47206 * 239.99759 * 13 11 9 17 17 C 1.34777 * 120.00199 * 89.99979 * 7 6 5 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 7 6 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 7 21 21 N 1.39836 * 125.38961 * 269.69002 * 20 19 17 22 22 C 1.30234 * 110.09780 * 179.83752 * 21 20 19 23 23 C 1.45858 * 107.65499 * 0.41731 * 22 21 20 24 24 C 1.39993 * 134.26435 * 179.71875 * 23 22 21 25 25 C 1.37014 * 118.15997 * 180.02562 * 24 23 22 26 26 C 1.38803 * 119.64641 * 359.97438 * 25 24 23 27 27 N 1.31508 * 121.58988 * 359.97438 * 26 25 24 28 28 C 1.32767 * 121.47131 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47091 * 296.03896 * 1 2 3 30 30 H 1.08998 * 109.47672 * 56.04726 * 1 2 3 31 31 H 1.09005 * 109.47066 * 176.05092 * 1 2 3 32 32 H 1.08991 * 109.47299 * 183.95987 * 3 2 1 33 33 H 1.09004 * 109.46995 * 303.96018 * 3 2 1 34 34 H 1.08995 * 109.46972 * 63.95357 * 3 2 1 35 35 H 1.09006 * 109.47229 * 306.04487 * 4 2 1 36 36 H 1.09005 * 109.46948 * 186.04692 * 4 2 1 37 37 H 1.08999 * 109.46986 * 59.99459 * 5 4 2 38 38 H 1.09005 * 109.46868 * 299.99774 * 5 4 2 39 39 H 1.09001 * 109.46980 * 59.99515 * 6 5 4 40 40 H 1.09005 * 109.46685 * 299.99608 * 6 5 4 41 41 H 1.08994 * 109.46996 * 30.00327 * 8 7 6 42 42 H 1.09001 * 109.46578 * 150.00190 * 8 7 6 43 43 H 0.96999 * 119.99754 * 180.02562 * 12 11 9 44 44 H 1.09004 * 109.46965 * 299.72211 * 19 17 7 45 45 H 1.08994 * 109.46990 * 59.72065 * 19 17 7 46 46 H 1.08001 * 126.17486 * 180.15318 * 22 21 20 47 47 H 1.08003 * 120.92029 * 0.03842 * 24 23 22 48 48 H 1.07995 * 120.18073 * 180.02562 * 25 24 23 49 49 H 1.08000 * 119.20717 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 6 2.1795 -3.0403 2.1553 7 7 1.8305 -4.4541 1.9954 8 6 0.5736 -4.9653 2.5478 9 6 0.8020 -5.4415 3.9592 10 1 1.7849 -5.3702 4.4008 11 6 -0.2441 -5.9684 4.6868 12 7 -1.4412 -6.0548 4.1491 13 14 0.0388 -6.5580 6.4364 14 1 1.4629 -6.3523 6.8040 15 1 -0.8285 -5.7887 7.3644 16 1 -0.2928 -8.0024 6.5318 17 6 2.6659 -5.2845 1.3403 18 8 3.7063 -4.8611 0.8828 19 6 2.3040 -6.7375 1.1705 20 7 3.3635 -7.4206 0.4244 21 7 3.4160 -7.5571 -0.9663 22 6 4.4871 -8.2126 -1.3115 23 6 5.2085 -8.5555 -0.0911 24 6 6.3967 -9.2439 0.1808 25 6 6.7803 -9.3799 1.4891 26 6 5.9922 -8.8388 2.4955 27 7 4.8785 -8.1934 2.2264 28 6 4.4563 -8.0300 0.9783 29 1 -0.3633 0.4511 0.9234 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0826 1.3434 -0.0710 33 1 1.5896 1.9164 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5612 -0.3872 2.0628 36 1 3.0798 -0.6610 1.1755 37 1 2.0659 -2.6212 0.0450 38 1 0.5473 -2.3475 0.9323 39 1 1.7448 -2.6614 3.0803 40 1 3.2638 -2.9354 2.1937 41 1 -0.1726 -4.1708 2.5486 42 1 0.2195 -5.7957 1.9369 43 1 -2.1772 -6.4251 4.6611 44 1 2.1928 -7.2012 2.1507 45 1 1.3650 -6.8164 0.6227 46 1 4.7850 -8.4615 -2.3194 47 1 6.9947 -9.6562 -0.6185 48 1 7.6914 -9.9046 1.7361 49 1 6.3011 -8.9505 3.5243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874191984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:21 Heat of formation + Delta-G solvation = 56.302889 kcal Electronic energy + Delta-G solvation = -30315.819445 eV Core-core repulsion = 26279.018371 eV Total energy + Delta-G solvation = -4036.801074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.52883 -40.89111 -39.02340 -38.66393 -36.97326 -35.02117 -34.66217 -33.28182 -32.47278 -31.05585 -29.31796 -28.88794 -28.51438 -26.79126 -25.00219 -24.88196 -23.99615 -23.50332 -22.06263 -21.77897 -20.24438 -18.72182 -18.67307 -18.32634 -17.98695 -17.23089 -16.95801 -16.62808 -16.51791 -16.38118 -16.14169 -15.85851 -15.60325 -15.11920 -15.01147 -14.86026 -14.48011 -14.37394 -14.08380 -13.68986 -13.56956 -13.47969 -13.39118 -13.28682 -13.19403 -13.07497 -12.77044 -12.69081 -12.63958 -12.46115 -12.39688 -12.13239 -11.97950 -11.73829 -11.70435 -11.56731 -10.96013 -10.63326 -10.36442 -10.01832 -9.60642 -9.35779 -9.26180 -8.25478 -6.40017 -0.10339 0.40406 1.04453 1.37415 1.40820 1.49503 1.53326 1.55349 2.17641 2.39669 2.87773 2.99345 3.05305 3.27332 3.34060 3.53163 3.75405 3.86404 3.88731 4.05890 4.10528 4.17023 4.18359 4.28487 4.33142 4.39659 4.46738 4.50196 4.53788 4.62345 4.68643 4.70212 4.73738 4.80493 4.84974 4.96697 4.97776 5.06800 5.10548 5.20395 5.24607 5.39394 5.54960 5.64768 5.74490 5.86156 5.97792 6.00420 6.08026 6.40610 6.47954 6.72056 7.02024 7.12863 7.33142 8.80447 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.006757 B = 0.003938 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4142.941553 B = 7108.399866 C =10177.423433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.566 5.566 3 C 0.025 3.975 4 C 0.067 3.933 5 C -0.111 4.111 6 C 0.123 3.877 7 N -0.591 5.591 8 C 0.251 3.749 9 C -0.548 4.548 10 H 0.050 0.950 11 C 0.027 3.973 12 N -0.916 5.916 13 Si 0.954 3.046 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.278 1.278 17 C 0.504 3.496 18 O -0.584 6.584 19 C 0.138 3.862 20 N -0.392 5.392 21 N -0.272 5.272 22 C 0.096 3.904 23 C -0.246 4.246 24 C 0.013 3.987 25 C -0.211 4.211 26 C 0.154 3.846 27 N -0.549 5.549 28 C 0.287 3.713 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.269 0.731 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.250 0.750 47 H 0.186 0.814 48 H 0.184 0.816 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.204 -0.420 -8.265 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.062 4.062 5 C -0.150 4.150 6 C 0.000 4.000 7 N -0.321 5.321 8 C 0.130 3.870 9 C -0.587 4.587 10 H 0.068 0.932 11 C -0.174 4.174 12 N -0.555 5.555 13 Si 0.780 3.220 14 H -0.198 1.198 15 H -0.200 1.200 16 H -0.203 1.203 17 C 0.291 3.709 18 O -0.466 6.466 19 C 0.013 3.987 20 N -0.181 5.181 21 N -0.083 5.083 22 C -0.102 4.102 23 C -0.256 4.256 24 C -0.015 4.015 25 C -0.232 4.232 26 C -0.013 4.013 27 N -0.264 5.264 28 C 0.049 3.951 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.265 0.735 47 H 0.203 0.797 48 H 0.202 0.798 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.903 0.606 -8.586 13.891 hybrid contribution 0.207 -0.390 1.661 1.719 sum 11.110 0.216 -6.925 13.093 Atomic orbital electron populations 1.22448 0.86793 1.02246 1.01143 1.61947 1.08857 1.15014 1.43248 1.22423 1.00979 0.87606 1.01232 1.21938 1.00311 0.92157 0.91762 1.21731 1.00812 0.94817 0.97682 1.21319 1.00141 0.79855 0.98668 1.48161 1.21779 1.09028 1.53096 1.19184 0.80148 0.94677 0.92982 1.21638 0.95689 1.42135 0.99225 0.93184 1.25587 0.94586 0.95300 1.01924 1.70002 1.01140 1.45499 1.38814 0.85558 0.78221 0.78193 0.80060 1.19796 1.20017 1.20311 1.20860 0.83471 0.88727 0.77814 1.90593 1.26233 1.78167 1.51572 1.21280 0.89567 0.89967 0.97881 1.47768 1.19587 1.47812 1.02981 1.76637 1.22817 1.19072 0.89799 1.25851 0.89852 0.94417 1.00080 1.20917 1.01170 1.10132 0.93428 1.21310 0.90813 0.90627 0.98719 1.22091 1.03666 1.04928 0.92536 1.23409 0.86884 0.88778 1.02266 1.66728 1.19030 1.20777 1.19897 1.19420 0.89536 0.94668 0.91444 0.95193 0.89965 0.92223 0.91114 0.90108 0.95097 0.93903 0.90525 0.93328 0.92032 0.90019 0.91765 0.95177 0.95277 0.92168 0.86480 0.85939 0.73465 0.79707 0.79834 0.79638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.32 127.69 1.19 1.71 16 2 N -0.57 -14.84 5.02 -948.86 -4.76 -19.60 16 3 C 0.03 0.51 9.57 127.69 1.22 1.73 16 4 C 0.07 1.89 4.96 86.30 0.43 2.32 16 5 C -0.11 -3.83 5.46 30.59 0.17 -3.66 16 6 C 0.12 4.81 5.41 86.38 0.47 5.28 16 7 N -0.59 -26.36 2.46 -826.14 -2.03 -28.39 16 8 C 0.25 12.14 4.97 85.63 0.43 12.56 16 9 C -0.55 -28.91 9.30 25.60 0.24 -28.67 16 10 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 11 C 0.03 1.43 5.46 84.66 0.46 1.89 16 12 N -0.92 -50.17 13.29 21.45 0.28 -49.88 16 13 Si 0.95 42.39 29.54 68.60 2.03 44.41 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 C 0.50 23.42 7.74 87.66 0.68 24.10 16 18 O -0.58 -29.67 16.01 -3.04 -0.05 -29.72 16 19 C 0.14 5.99 5.44 85.64 0.47 6.46 16 20 N -0.39 -16.10 3.13 -348.82 -1.09 -17.19 16 21 N -0.27 -9.86 12.40 -53.15 -0.66 -10.52 16 22 C 0.10 2.56 12.29 86.90 1.07 3.63 16 23 C -0.25 -7.09 6.38 -20.23 -0.13 -7.22 16 24 C 0.01 0.25 10.18 22.41 0.23 0.48 16 25 C -0.21 -3.77 10.04 22.12 0.22 -3.55 16 26 C 0.15 3.96 11.15 84.88 0.95 4.91 16 27 N -0.55 -20.52 10.40 -192.95 -2.01 -22.52 16 28 C 0.29 11.01 7.97 134.12 1.07 12.08 16 29 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 31 H 0.06 1.57 6.47 -2.38 -0.02 1.56 16 32 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 33 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.04 1.15 8.12 -2.38 -0.02 1.13 16 36 H 0.08 2.11 8.06 -2.38 -0.02 2.09 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 2.15 6.55 -2.38 -0.02 2.13 16 39 H 0.08 3.09 8.07 -2.39 -0.02 3.07 16 40 H 0.06 2.58 7.42 -2.38 -0.02 2.57 16 41 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 42 H 0.03 1.45 6.43 -2.39 -0.02 1.44 16 43 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.12 5.38 8.02 -2.38 -0.02 5.36 16 45 H 0.12 4.99 7.40 -2.39 -0.02 4.97 16 46 H 0.25 3.48 8.06 -2.91 -0.02 3.45 16 47 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 48 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 49 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -76.06 410.96 1.80 -74.25 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.94 Total: 25.13 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 9.15 Total: 34.03 kcal Atomic # 7 Polarization: -137.84 SS G_CDS: -10.26 Total: -148.10 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -76.06 1.80 -74.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874191984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.555 kcal (2) G-P(sol) polarization free energy of solvation -76.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds