Wall clock time and date at job start Wed Apr 1 2020 03:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 119.99886 * 2 1 4 4 H 1.48504 * 109.46972 * 269.99811 * 3 2 1 5 5 H 1.48504 * 109.47440 * 29.99532 * 3 2 1 6 6 H 1.48500 * 109.47518 * 149.99861 * 3 2 1 7 7 C 1.39944 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00442 * 191.28955 * 7 2 1 9 9 C 1.41394 * 119.99543 * 11.56881 * 7 2 1 10 10 C 1.40562 * 120.08630 * 28.63680 * 9 7 2 11 11 C 1.37598 * 119.54293 * 179.77223 * 10 9 7 12 12 C 1.38436 * 120.14333 * 0.59256 * 11 10 9 13 13 C 1.39148 * 120.91328 * 359.73890 * 12 11 10 14 14 C 1.37237 * 119.86862 * 359.83078 * 13 12 11 15 15 C 1.50682 * 121.80866 * 180.45903 * 14 13 12 16 16 C 1.52895 * 109.98489 * 343.09675 * 15 14 13 17 17 N 1.47168 * 108.45798 * 50.25079 * 16 15 14 18 18 C 1.46900 * 111.00086 * 52.33454 * 17 16 15 19 19 C 1.53006 * 109.47376 * 67.37927 * 18 17 16 20 20 H 1.09003 * 109.46551 * 304.15619 * 19 18 17 21 21 O 1.42900 * 109.46947 * 64.15226 * 19 18 17 22 22 C 1.52998 * 109.47075 * 184.15387 * 19 18 17 23 23 C 1.53005 * 109.46711 * 174.99871 * 22 19 18 24 24 O 1.42898 * 110.01691 * 64.30200 * 23 22 19 25 25 C 1.54258 * 110.03306 * 302.90788 * 23 22 19 26 26 C 1.54964 * 104.16081 * 217.13733 * 25 23 22 27 27 C 1.54885 * 102.77864 * 37.88778 * 26 25 23 28 28 C 1.53874 * 110.02851 * 185.68895 * 23 22 19 29 29 C 1.46613 * 110.23893 * 288.92150 * 17 16 15 30 30 H 0.96999 * 120.00045 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.22450 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.92606 * 180.29933 * 11 10 9 33 33 H 1.07998 * 119.54266 * 179.71884 * 12 11 10 34 34 H 1.09001 * 109.38559 * 103.25659 * 15 14 13 35 35 H 1.08999 * 109.38619 * 223.04350 * 15 14 13 36 36 H 1.09001 * 109.63964 * 169.93977 * 16 15 14 37 37 H 1.08999 * 109.63926 * 290.55908 * 16 15 14 38 38 H 1.09000 * 109.47426 * 187.38227 * 18 17 16 39 39 H 1.09000 * 109.47161 * 307.37963 * 18 17 16 40 40 H 0.96699 * 113.99842 * 60.00303 * 21 19 18 41 41 H 1.08991 * 109.47272 * 294.99678 * 22 19 18 42 42 H 1.09004 * 109.46915 * 55.00490 * 22 19 18 43 43 H 0.96703 * 114.00230 * 179.97438 * 24 23 22 44 44 H 1.09004 * 110.49455 * 335.78363 * 25 23 22 45 45 H 1.09002 * 110.48941 * 98.42928 * 25 23 22 46 46 H 1.09003 * 110.72203 * 279.57273 * 26 25 23 47 47 H 1.09000 * 110.92561 * 156.29553 * 26 25 23 48 48 H 1.08996 * 110.49046 * 203.40190 * 27 26 25 49 49 H 1.09007 * 110.48845 * 80.75957 * 27 26 25 50 50 H 1.09000 * 110.03328 * 238.56886 * 28 23 22 51 51 H 1.09002 * 110.03446 * 0.02562 * 28 23 22 52 52 H 1.09003 * 109.26803 * 172.81112 * 29 17 16 53 53 H 1.08994 * 109.26689 * 292.27401 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6528 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0723 -1.2209 0.1836 9 6 1.3226 -2.4241 -0.2445 10 6 0.1672 -2.4308 -1.0450 11 6 -0.4884 -3.6176 -1.2800 12 6 -0.0188 -4.7937 -0.7210 13 6 1.1197 -4.8004 0.0790 14 6 1.7934 -3.6290 0.3187 15 6 3.0362 -3.5875 1.1696 16 6 3.1418 -4.8649 2.0032 17 7 2.9690 -6.0206 1.1086 18 6 3.8845 -5.9408 -0.0375 19 6 5.3259 -6.1059 0.4487 20 1 5.5391 -5.3587 1.2132 21 8 5.4959 -7.4133 0.9998 22 6 6.2855 -5.9197 -0.7283 23 6 7.7285 -5.9607 -0.2211 24 8 8.0218 -7.2522 0.3156 25 6 7.9400 -4.8793 0.8585 26 6 9.3769 -4.3605 0.5989 27 6 9.4684 -4.3641 -0.9472 28 6 8.6999 -5.6337 -1.3687 29 6 1.5754 -6.1126 0.6624 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2011 -1.5115 -1.4759 32 1 -1.3740 -3.6306 -1.8981 33 1 -0.5436 -5.7189 -0.9081 34 1 3.9122 -3.5015 0.5267 35 1 2.9902 -2.7256 1.8354 36 1 4.1218 -4.9125 2.4780 37 1 2.3618 -4.8710 2.7645 38 1 3.6476 -6.7330 -0.7476 39 1 3.7739 -4.9717 -0.5241 40 1 5.3221 -8.1296 0.3739 41 1 6.1321 -6.7199 -1.4522 42 1 6.0948 -4.9577 -1.2039 43 1 8.9233 -7.3421 0.6538 44 1 7.2161 -4.0733 0.7383 45 1 7.8651 -5.3151 1.8548 46 1 10.1150 -5.0362 1.0311 47 1 9.5032 -3.3513 0.9910 48 1 10.5085 -4.4236 -1.2678 49 1 8.9914 -3.4750 -1.3597 50 1 9.3958 -6.4597 -1.5157 51 1 8.1434 -5.4454 -2.2868 52 1 1.4911 -6.8917 -0.0954 53 1 0.9419 -6.3679 1.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879065416.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:25 Heat of formation + Delta-G solvation = -113.281876 kcal Electronic energy + Delta-G solvation = -31899.059108 eV Core-core repulsion = 27926.151879 eV Total energy + Delta-G solvation = -3972.907229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.209 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.21299 -40.35880 -38.46248 -37.02590 -35.48754 -35.39809 -33.24883 -32.66045 -31.42906 -30.29306 -29.76084 -28.89737 -27.06139 -26.02303 -24.68959 -23.78904 -22.44753 -22.26496 -21.40702 -20.81521 -19.86988 -18.85622 -17.71489 -17.44078 -17.24201 -17.08203 -16.44199 -16.34422 -16.16721 -15.64151 -15.49531 -15.05835 -14.97702 -14.79669 -14.71908 -14.44593 -14.37672 -14.00348 -13.89132 -13.48880 -13.23650 -13.07913 -12.96567 -12.82773 -12.69405 -12.58886 -12.46305 -12.29211 -12.13822 -12.09538 -12.04057 -11.97689 -11.84692 -11.67024 -11.55420 -11.50319 -11.38005 -11.07107 -11.00813 -10.74279 -10.37488 -9.18458 -9.11517 -9.03603 -8.57628 -6.34870 0.96358 1.06221 1.34960 1.46778 1.49342 2.18512 2.74634 2.99690 3.37105 3.58891 3.65142 3.67750 3.85383 3.87581 3.99242 4.12088 4.20130 4.25929 4.31382 4.36719 4.40823 4.47066 4.52520 4.56200 4.58817 4.67240 4.68671 4.75951 4.78559 4.81466 4.82680 4.90417 4.96073 4.97678 5.04098 5.07289 5.12587 5.16126 5.19050 5.24870 5.27672 5.35946 5.37267 5.42422 5.43648 5.47725 5.77028 5.95877 6.08893 6.13999 6.17834 6.28838 6.40758 6.71629 6.96607 7.03719 7.06893 7.11308 8.37299 Molecular weight = 345.21amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.003580 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.314767 B = 7820.390055 C = 9770.815307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.488 4.488 8 H 0.075 0.925 9 C 0.080 3.920 10 C -0.191 4.191 11 C -0.117 4.117 12 C -0.231 4.231 13 C -0.097 4.097 14 C -0.188 4.188 15 C -0.078 4.078 16 C 0.060 3.940 17 N -0.509 5.509 18 C 0.019 3.981 19 C 0.131 3.869 20 H 0.084 0.916 21 O -0.544 6.544 22 C -0.136 4.136 23 C 0.143 3.857 24 O -0.554 6.554 25 C -0.154 4.154 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.150 4.150 29 C 0.102 3.898 30 H 0.284 0.716 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.375 0.625 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.381 0.619 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.081 0.919 51 H 0.067 0.933 52 H 0.088 0.912 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.558 -9.775 -0.655 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.093 0.907 9 C 0.077 3.923 10 C -0.211 4.211 11 C -0.136 4.136 12 C -0.251 4.251 13 C -0.099 4.099 14 C -0.190 4.190 15 C -0.116 4.116 16 C -0.069 4.069 17 N -0.230 5.230 18 C -0.110 4.110 19 C 0.072 3.928 20 H 0.102 0.898 21 O -0.349 6.349 22 C -0.174 4.174 23 C 0.102 3.898 24 O -0.361 6.361 25 C -0.191 4.191 26 C -0.162 4.162 27 C -0.163 4.163 28 C -0.188 4.188 29 C -0.026 4.026 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.222 0.778 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.229 0.771 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.100 0.900 51 H 0.086 0.914 52 H 0.106 0.894 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.010 -9.848 0.000 18.796 hybrid contribution -0.324 1.970 -1.091 2.275 sum 15.686 -7.878 -1.091 17.587 Atomic orbital electron populations 1.69883 1.08892 1.30001 1.37527 1.26699 0.95486 1.04301 0.91598 0.85277 0.79146 0.76413 0.79353 1.18907 1.19579 1.18043 1.19719 0.96048 0.91407 1.44642 0.90658 1.17930 0.92141 0.92899 0.89282 1.21273 1.00183 0.96646 1.02971 1.20900 0.99025 0.93469 1.00190 1.20673 1.00434 0.97203 1.06750 1.20167 0.95917 0.95621 0.98153 1.19688 1.01167 0.93114 1.04985 1.20582 0.94809 0.98801 0.97416 1.22166 1.02057 0.87477 0.95152 1.62768 1.03712 1.39808 1.16700 1.22952 0.94157 1.00892 0.92987 1.21619 0.90306 0.86181 0.94737 0.89782 1.86578 1.92079 1.14421 1.41815 1.22335 0.93715 1.02974 0.98403 1.21596 0.93396 0.83166 0.91670 1.86622 1.36193 1.31578 1.81669 1.23109 0.97964 0.98671 0.99396 1.22527 0.95964 1.01634 0.96027 1.22370 1.00729 0.97418 0.95748 1.22922 0.98484 0.98919 0.98494 1.21043 0.89219 0.92959 0.99413 0.90591 0.88573 0.87803 0.86739 0.92677 0.92831 0.89651 0.91522 0.90458 0.94744 0.77830 0.90541 0.90312 0.77116 0.91975 0.91223 0.90245 0.91314 0.90281 0.92122 0.90048 0.91418 0.89363 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.75 10.87 21.83 0.24 -44.51 16 2 C 0.03 1.64 5.23 85.26 0.45 2.09 16 3 Si 0.98 38.72 29.57 68.60 2.03 40.75 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.49 -25.99 8.05 23.46 0.19 -25.80 16 8 H 0.08 3.86 7.11 -2.91 -0.02 3.84 16 9 C 0.08 4.27 5.56 -21.24 -0.12 4.15 16 10 C -0.19 -10.30 8.65 22.69 0.20 -10.10 16 11 C -0.12 -5.58 10.02 22.17 0.22 -5.36 16 12 C -0.23 -9.98 9.65 22.54 0.22 -9.76 16 13 C -0.10 -4.11 5.39 -19.89 -0.11 -4.22 16 14 C -0.19 -8.81 5.17 -19.41 -0.10 -8.91 16 15 C -0.08 -3.12 4.15 29.81 0.12 -3.00 16 16 C 0.06 2.01 5.64 86.22 0.49 2.50 16 17 N -0.51 -16.22 4.95 -901.11 -4.46 -20.68 16 18 C 0.02 0.54 3.95 86.31 0.34 0.89 16 19 C 0.13 3.33 2.75 30.60 0.08 3.41 16 20 H 0.08 2.35 5.18 -2.39 -0.01 2.34 16 21 O -0.54 -14.12 11.74 -130.31 -1.53 -15.65 16 22 C -0.14 -2.96 3.89 30.60 0.12 -2.84 16 23 C 0.14 2.68 1.00 -10.07 -0.01 2.67 16 24 O -0.55 -10.66 11.37 -130.31 -1.48 -12.15 16 25 C -0.15 -2.96 4.84 31.69 0.15 -2.80 16 26 C -0.12 -1.85 6.91 31.91 0.22 -1.63 16 27 C -0.13 -1.83 6.83 31.67 0.22 -1.61 16 28 C -0.15 -2.37 6.24 31.32 0.20 -2.18 16 29 C 0.10 3.44 5.54 85.60 0.47 3.92 16 30 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 31 H 0.10 5.48 6.23 -2.91 -0.02 5.47 16 32 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 34 H 0.05 2.16 6.70 -2.39 -0.02 2.14 16 35 H 0.05 2.31 7.41 -2.39 -0.02 2.29 16 36 H 0.09 2.61 6.80 -2.39 -0.02 2.59 16 37 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 38 H 0.08 2.09 7.91 -2.39 -0.02 2.07 16 39 H 0.03 1.20 5.32 -2.39 -0.01 1.19 16 40 H 0.37 7.91 9.05 -74.06 -0.67 7.24 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.38 4.82 9.05 -74.06 -0.67 4.15 16 44 H 0.06 1.37 7.48 -2.38 -0.02 1.35 16 45 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.08 1.12 7.95 -2.39 -0.02 1.10 16 51 H 0.07 1.13 7.67 -2.39 -0.02 1.11 16 52 H 0.09 2.67 7.89 -2.39 -0.02 2.65 16 53 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -62.01 398.53 -2.27 -64.29 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.42 Total: 46.54 kcal Atomic # 6 Polarization: -61.94 SS G_CDS: 3.35 Total: -58.59 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -4.22 Total: -65.19 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -3.01 Total: -27.80 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -62.01 -2.27 -64.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879065416.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.996 kcal (2) G-P(sol) polarization free energy of solvation -62.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds