Wall clock time and date at job start Wed Apr 1 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99998 * 2 1 4 4 C 1.53000 * 109.46799 * 66.05126 * 3 2 1 5 5 C 1.53004 * 109.46861 * 180.02562 * 4 3 2 6 6 N 1.46894 * 109.47073 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99947 * 236.04875 * 2 1 3 8 8 C 1.50702 * 109.46975 * 293.95527 * 7 2 1 9 9 C 1.35342 * 126.75485 * 95.29589 * 8 7 2 10 10 N 1.35312 * 106.17908 * 180.12221 * 9 8 7 11 11 C 1.46498 * 125.87305 * 179.90351 * 10 9 8 12 12 C 1.50701 * 109.47235 * 124.71532 * 11 10 9 13 13 C 1.38305 * 119.92910 * 270.25475 * 12 11 10 14 14 C 1.38104 * 120.06272 * 180.25358 * 13 12 11 15 15 C 1.38874 * 119.93265 * 359.47314 * 14 13 12 16 16 O 1.35749 * 120.06890 * 180.29770 * 15 14 13 17 17 C 1.34834 * 117.00013 * 354.46142 * 16 15 14 18 18 H 1.07996 * 120.00021 * 5.05939 * 17 16 15 19 19 C 1.38654 * 119.99707 * 185.05824 * 17 16 15 20 20 N 1.31550 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99577 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 59.99976 * 21 19 17 23 23 H 1.48494 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47275 * 300.00018 * 21 19 17 25 25 C 1.38882 * 119.86301 * 0.27303 * 15 14 13 26 26 C 1.38094 * 119.92975 * 0.02562 * 25 15 14 27 27 N 1.28719 * 108.26176 * 359.64143 * 10 9 8 28 28 N 1.28635 * 110.17499 * 0.22354 * 27 10 9 29 29 H 1.08996 * 109.46994 * 183.95234 * 1 2 3 30 30 H 1.09003 * 109.46863 * 303.94881 * 1 2 3 31 31 H 1.08991 * 109.47219 * 63.94992 * 1 2 3 32 32 H 1.09002 * 109.47020 * 186.04821 * 3 2 1 33 33 H 1.08999 * 109.47098 * 306.04954 * 3 2 1 34 34 H 1.09002 * 109.47085 * 299.99655 * 4 3 2 35 35 H 1.08997 * 109.47415 * 59.99484 * 4 3 2 36 36 H 1.09002 * 109.46835 * 299.99619 * 5 4 3 37 37 H 1.08999 * 109.47222 * 59.99714 * 5 4 3 38 38 H 1.00894 * 111.00154 * 180.02562 * 6 5 4 39 39 H 1.00907 * 110.99937 * 303.94936 * 6 5 4 40 40 H 1.08996 * 109.47684 * 173.95126 * 7 2 1 41 41 H 1.09005 * 109.47001 * 53.95435 * 7 2 1 42 42 H 1.08004 * 126.91101 * 0.02562 * 9 8 7 43 43 H 1.09006 * 109.47116 * 4.71682 * 11 10 9 44 44 H 1.08998 * 109.47244 * 244.71836 * 11 10 9 45 45 H 1.07990 * 119.96792 * 0.02562 * 13 12 11 46 46 H 1.08000 * 120.02708 * 179.74272 * 14 13 12 47 47 H 0.97006 * 119.99724 * 179.97438 * 20 19 17 48 48 H 1.08005 * 120.03486 * 180.02562 * 25 15 14 49 49 H 1.08006 * 119.96521 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1793 3.4860 1.3181 6 7 1.8294 4.1448 2.5835 7 6 1.9955 -0.7659 -1.1376 8 6 1.6369 -2.2204 -0.9729 9 6 0.5694 -2.8570 -1.5087 10 7 0.6501 -4.1426 -1.0942 11 6 -0.2952 -5.2120 -1.4244 12 6 0.4487 -6.3657 -2.0462 13 6 0.6304 -6.4114 -3.4165 14 6 1.3070 -7.4700 -3.9898 15 6 1.8148 -8.4837 -3.1878 16 8 2.4856 -9.5226 -3.7478 17 6 2.5255 -9.5707 -5.0947 18 1 2.1082 -8.7621 -5.6765 19 6 3.1023 -10.6582 -5.7328 20 7 3.6111 -11.6428 -5.0241 21 14 3.1582 -10.7244 -7.5987 22 1 3.9229 -9.5598 -8.1128 23 1 3.8208 -11.9815 -8.0298 24 1 1.7748 -10.6848 -8.1372 25 6 1.6353 -8.4323 -1.8116 26 6 0.9524 -7.3742 -1.2450 27 7 1.7033 -4.2658 -0.3645 28 7 2.3139 -3.1373 -0.2727 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 -0.3633 0.4513 -0.9232 32 1 3.0798 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 0.5473 2.0844 1.4266 35 1 2.0659 1.5014 2.1492 36 1 3.2636 3.4593 1.2096 37 1 1.7446 4.0417 0.4872 38 1 2.1799 5.0906 2.6078 39 1 0.8325 4.1249 2.7380 40 1 3.0797 -0.6611 -1.1758 41 1 1.5611 -0.3871 -2.0628 42 1 -0.1942 -2.4254 -2.1388 43 1 -1.0373 -4.8362 -2.1289 44 1 -0.7945 -5.5489 -0.5160 45 1 0.2395 -5.6204 -4.0392 46 1 1.4450 -7.5072 -5.0603 47 1 4.0143 -12.4038 -5.4705 48 1 2.0293 -9.2189 -1.1852 49 1 0.8128 -7.3334 -0.1747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881284837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:47 Heat of formation + Delta-G solvation = 102.166785 kcal Electronic energy + Delta-G solvation = -28524.805161 eV Core-core repulsion = 24489.992895 eV Total energy + Delta-G solvation = -4034.812266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.08602 -39.19891 -38.33711 -37.00074 -35.68108 -34.36793 -32.41676 -32.00650 -30.35846 -30.29751 -30.02618 -27.75388 -26.40431 -25.74017 -25.17769 -22.90313 -22.13782 -22.06500 -21.27689 -21.08583 -20.14911 -18.13450 -17.34868 -16.99645 -16.53114 -16.46955 -15.92123 -15.77093 -15.19952 -15.05253 -14.77171 -14.65114 -14.41498 -14.33626 -14.14828 -13.73999 -13.67998 -13.22673 -12.97398 -12.89545 -12.82657 -12.22005 -12.17247 -12.03731 -11.81085 -11.75200 -11.71212 -11.40986 -11.32368 -11.17410 -10.99400 -10.94444 -10.79028 -10.58206 -10.53166 -9.83762 -9.47475 -9.18028 -9.14719 -8.95088 -8.58322 -8.31927 -7.40257 -6.56230 -4.15159 1.70584 1.89748 2.11284 2.60254 2.80102 3.06725 3.08481 3.10877 3.68214 3.87525 4.15875 4.29785 4.42878 4.52400 4.61134 4.76792 4.81056 4.86347 4.94886 4.98132 4.98939 5.00754 5.14623 5.15786 5.22886 5.24294 5.25754 5.29472 5.36129 5.47926 5.56361 5.65334 5.71084 5.79209 5.93742 5.96559 6.07944 6.18793 6.27776 6.53706 6.62772 6.72317 6.73778 6.75138 6.78722 6.90301 6.93586 7.09310 7.16761 7.30541 7.66067 7.87913 8.75056 8.88394 9.55762 10.60878 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.001621 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.357570 B =17270.202215 C =17710.140893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.534 5.534 3 C 0.058 3.942 4 C -0.115 4.115 5 C 0.062 3.938 6 N -0.852 5.852 7 C 0.145 3.855 8 C -0.020 4.020 9 C -0.055 4.055 10 N -0.277 5.277 11 C 0.173 3.827 12 C -0.227 4.227 13 C -0.047 4.047 14 C -0.239 4.239 15 C 0.166 3.834 16 O -0.169 6.169 17 C -0.395 4.395 18 H 0.093 0.907 19 C 0.042 3.958 20 N -0.856 5.856 21 Si 0.943 3.057 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.195 4.195 26 C -0.035 4.035 27 N -0.068 5.068 28 N -0.262 5.262 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.341 0.659 39 H 0.340 0.660 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.181 0.819 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.129 0.871 47 H 0.273 0.727 48 H 0.121 0.879 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 26.216 6.531 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.070 4.070 6 N -0.382 5.382 7 C 0.016 3.984 8 C -0.160 4.160 9 C -0.208 4.208 10 N -0.070 5.070 11 C 0.054 3.946 12 C -0.229 4.229 13 C -0.066 4.066 14 C -0.258 4.258 15 C 0.111 3.889 16 O -0.071 6.071 17 C -0.471 4.471 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.490 5.490 21 Si 0.767 3.233 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.214 4.214 26 C -0.053 4.053 27 N -0.048 5.048 28 N -0.128 5.128 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.198 0.802 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.146 0.854 47 H 0.083 0.917 48 H 0.139 0.861 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.168 23.963 8.180 26.606 hybrid contribution -1.618 1.651 -3.126 3.889 sum -9.786 25.615 5.053 27.882 Atomic orbital electron populations 1.22450 0.87507 1.02442 1.00245 1.61842 1.07922 1.12997 1.43082 1.22061 1.00550 0.87785 0.96626 1.21579 1.00901 0.94571 0.98314 1.21763 1.00946 0.94517 0.89745 1.58676 1.19760 1.23546 1.36170 1.20170 1.01047 0.85929 0.91256 1.21576 0.95285 0.97142 1.01954 1.23308 1.04012 0.85711 1.07731 1.47883 1.18816 1.08585 1.31702 1.20826 0.88135 0.84258 1.01373 1.18939 1.11851 0.98225 0.93835 1.20546 0.96161 0.96463 0.93389 1.21095 1.07109 0.96901 1.00705 1.19455 0.89108 0.87946 0.92413 1.83981 1.60586 1.39292 1.23262 1.21323 1.40834 1.06784 0.78169 0.88950 1.25330 0.95904 0.94381 1.00756 1.70026 1.34697 1.07922 1.36346 0.85754 0.78985 0.78312 0.80256 1.19403 1.20117 1.19397 1.20214 1.07200 1.01482 0.92520 1.20478 0.94462 0.92171 0.98236 1.78372 0.95916 1.18468 1.12014 1.75087 1.23693 0.95529 1.18520 0.91336 0.91278 0.95715 0.90349 0.94961 0.92148 0.90020 0.90833 0.95808 0.84632 0.84812 0.88981 0.93203 0.80211 0.87925 0.88324 0.87658 0.85352 0.91722 0.86123 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.13 60.07 0.55 0.72 16 2 N -0.53 -5.00 4.75 -244.36 -1.16 -6.16 16 3 C 0.06 0.42 4.96 -3.82 -0.02 0.40 16 4 C -0.12 -0.80 5.41 -26.73 -0.14 -0.94 16 5 C 0.06 0.36 6.79 -3.83 -0.03 0.33 16 6 N -0.85 -4.90 9.62 -10.37 -0.10 -5.00 16 7 C 0.15 1.44 5.53 -4.97 -0.03 1.41 16 8 C -0.02 -0.26 5.96 -82.78 -0.49 -0.76 16 9 C -0.06 -0.63 10.54 -17.05 -0.18 -0.81 16 10 N -0.28 -3.79 3.43 -62.44 -0.21 -4.00 16 11 C 0.17 2.02 6.58 -5.19 -0.03 1.99 16 12 C -0.23 -3.60 5.25 -104.57 -0.55 -4.15 16 13 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 14 C -0.24 -5.01 9.17 -39.40 -0.36 -5.37 16 15 C 0.17 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.17 -4.76 9.76 0.04 0.00 -4.75 16 17 C -0.40 -10.81 9.49 30.89 0.29 -10.52 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 20 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 21 Si 0.94 20.01 29.55 -169.99 -5.02 14.98 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.19 -4.06 9.99 -39.40 -0.39 -4.45 16 26 C -0.03 -0.60 9.69 -39.61 -0.38 -0.99 16 27 N -0.07 -1.17 12.92 60.35 0.78 -0.39 16 28 N -0.26 -4.44 12.41 33.29 0.41 -4.03 16 29 H 0.07 0.62 6.58 -51.93 -0.34 0.27 16 30 H 0.07 0.50 6.30 -51.93 -0.33 0.17 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 33 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 34 H 0.06 0.40 6.47 -51.93 -0.34 0.06 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.34 1.41 9.08 -39.29 -0.36 1.06 16 39 H 0.34 1.58 8.99 -39.29 -0.35 1.23 16 40 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 41 H 0.05 0.40 8.12 -51.93 -0.42 -0.03 16 42 H 0.18 1.33 8.06 -52.48 -0.42 0.90 16 43 H 0.10 0.86 8.01 -51.93 -0.42 0.45 16 44 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 45 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 47 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 49 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 407.32 15.07 6.14 6.14 Total: -1.00 -33.43 407.32 -8.22 -41.65 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.30 Total: 5.05 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -2.51 Total: -19.61 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.48 Total: -43.47 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.00 Total: -4.75 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.43 -8.22 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881284837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.820 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds