Wall clock time and date at job start Wed Apr 1 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99998 * 2 1 4 4 C 1.53000 * 109.46799 * 66.05126 * 3 2 1 5 5 C 1.53004 * 109.46861 * 180.02562 * 4 3 2 6 6 N 1.46894 * 109.47073 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99947 * 236.04875 * 2 1 3 8 8 C 1.50702 * 109.46975 * 293.95527 * 7 2 1 9 9 C 1.35342 * 126.75485 * 95.29589 * 8 7 2 10 10 N 1.35312 * 106.17908 * 180.12221 * 9 8 7 11 11 C 1.46498 * 125.87305 * 179.90351 * 10 9 8 12 12 C 1.50701 * 109.47235 * 124.71532 * 11 10 9 13 13 C 1.38305 * 119.92910 * 270.25475 * 12 11 10 14 14 C 1.38104 * 120.06272 * 180.25358 * 13 12 11 15 15 C 1.38874 * 119.93265 * 359.47314 * 14 13 12 16 16 O 1.35749 * 120.06890 * 180.29770 * 15 14 13 17 17 C 1.34834 * 117.00013 * 354.46142 * 16 15 14 18 18 H 1.07996 * 120.00021 * 5.05939 * 17 16 15 19 19 C 1.38654 * 119.99707 * 185.05824 * 17 16 15 20 20 N 1.31550 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99577 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 59.99976 * 21 19 17 23 23 H 1.48494 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47275 * 300.00018 * 21 19 17 25 25 C 1.38882 * 119.86301 * 0.27303 * 15 14 13 26 26 C 1.38094 * 119.92975 * 0.02562 * 25 15 14 27 27 N 1.28719 * 108.26176 * 359.64143 * 10 9 8 28 28 N 1.28635 * 110.17499 * 0.22354 * 27 10 9 29 29 H 1.08996 * 109.46994 * 183.95234 * 1 2 3 30 30 H 1.09003 * 109.46863 * 303.94881 * 1 2 3 31 31 H 1.08991 * 109.47219 * 63.94992 * 1 2 3 32 32 H 1.09002 * 109.47020 * 186.04821 * 3 2 1 33 33 H 1.08999 * 109.47098 * 306.04954 * 3 2 1 34 34 H 1.09002 * 109.47085 * 299.99655 * 4 3 2 35 35 H 1.08997 * 109.47415 * 59.99484 * 4 3 2 36 36 H 1.09002 * 109.46835 * 299.99619 * 5 4 3 37 37 H 1.08999 * 109.47222 * 59.99714 * 5 4 3 38 38 H 1.00894 * 111.00154 * 180.02562 * 6 5 4 39 39 H 1.00907 * 110.99937 * 303.94936 * 6 5 4 40 40 H 1.08996 * 109.47684 * 173.95126 * 7 2 1 41 41 H 1.09005 * 109.47001 * 53.95435 * 7 2 1 42 42 H 1.08004 * 126.91101 * 0.02562 * 9 8 7 43 43 H 1.09006 * 109.47116 * 4.71682 * 11 10 9 44 44 H 1.08998 * 109.47244 * 244.71836 * 11 10 9 45 45 H 1.07990 * 119.96792 * 0.02562 * 13 12 11 46 46 H 1.08000 * 120.02708 * 179.74272 * 14 13 12 47 47 H 0.97006 * 119.99724 * 179.97438 * 20 19 17 48 48 H 1.08005 * 120.03486 * 180.02562 * 25 15 14 49 49 H 1.08006 * 119.96521 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1793 3.4860 1.3181 6 7 1.8294 4.1448 2.5835 7 6 1.9955 -0.7659 -1.1376 8 6 1.6369 -2.2204 -0.9729 9 6 0.5694 -2.8570 -1.5087 10 7 0.6501 -4.1426 -1.0942 11 6 -0.2952 -5.2120 -1.4244 12 6 0.4487 -6.3657 -2.0462 13 6 0.6304 -6.4114 -3.4165 14 6 1.3070 -7.4700 -3.9898 15 6 1.8148 -8.4837 -3.1878 16 8 2.4856 -9.5226 -3.7478 17 6 2.5255 -9.5707 -5.0947 18 1 2.1082 -8.7621 -5.6765 19 6 3.1023 -10.6582 -5.7328 20 7 3.6111 -11.6428 -5.0241 21 14 3.1582 -10.7244 -7.5987 22 1 3.9229 -9.5598 -8.1128 23 1 3.8208 -11.9815 -8.0298 24 1 1.7748 -10.6848 -8.1372 25 6 1.6353 -8.4323 -1.8116 26 6 0.9524 -7.3742 -1.2450 27 7 1.7033 -4.2658 -0.3645 28 7 2.3139 -3.1373 -0.2727 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 -0.3633 0.4513 -0.9232 32 1 3.0798 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 0.5473 2.0844 1.4266 35 1 2.0659 1.5014 2.1492 36 1 3.2636 3.4593 1.2096 37 1 1.7446 4.0417 0.4872 38 1 2.1799 5.0906 2.6078 39 1 0.8325 4.1249 2.7380 40 1 3.0797 -0.6611 -1.1758 41 1 1.5611 -0.3871 -2.0628 42 1 -0.1942 -2.4254 -2.1388 43 1 -1.0373 -4.8362 -2.1289 44 1 -0.7945 -5.5489 -0.5160 45 1 0.2395 -5.6204 -4.0392 46 1 1.4450 -7.5072 -5.0603 47 1 4.0143 -12.4038 -5.4705 48 1 2.0293 -9.2189 -1.1852 49 1 0.8128 -7.3334 -0.1747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881284837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:46 Heat of formation + Delta-G solvation = 76.442904 kcal Electronic energy + Delta-G solvation = -28525.920632 eV Core-core repulsion = 24489.992895 eV Total energy + Delta-G solvation = -4035.927737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.10875 -40.85958 -38.99660 -38.57498 -36.25512 -35.50445 -34.30137 -32.81901 -31.89987 -31.57578 -30.78994 -28.48082 -27.90271 -26.84339 -26.38555 -23.79312 -23.49544 -23.22995 -22.35664 -21.73679 -21.26626 -19.93380 -18.97155 -18.06245 -17.55296 -16.99635 -16.62509 -16.54642 -16.40915 -16.34332 -15.86773 -15.80762 -15.62201 -15.55004 -15.16793 -15.06178 -14.78182 -14.50695 -14.30853 -13.90809 -13.64868 -13.47305 -13.26590 -13.05546 -12.84048 -12.72171 -12.59784 -12.51231 -12.44921 -12.37906 -12.31258 -12.17145 -12.13657 -11.59415 -11.53141 -11.25829 -10.91663 -10.83714 -10.10442 -9.85609 -9.59419 -9.19662 -9.08962 -8.51233 -6.20584 0.40305 0.54104 0.81429 1.33374 1.43048 1.50160 1.59554 1.75619 2.14950 2.80003 3.05113 3.12888 3.41229 3.46370 3.66260 3.74294 3.85846 3.99138 4.02504 4.09458 4.14244 4.21367 4.28911 4.33685 4.41491 4.50431 4.51702 4.54181 4.59612 4.68021 4.70815 4.73894 4.76469 4.85740 4.96242 5.04202 5.08751 5.10729 5.20439 5.27048 5.27706 5.37067 5.47362 5.63189 5.64147 5.78552 5.97266 6.10866 6.11487 6.17812 6.27438 6.60452 6.92614 7.69805 7.71177 8.71397 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.001621 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.357570 B =17270.202215 C =17710.140893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.062 3.938 4 C -0.107 4.107 5 C 0.065 3.935 6 N -0.865 5.865 7 C 0.148 3.852 8 C -0.031 4.031 9 C -0.033 4.033 10 N -0.278 5.278 11 C 0.171 3.829 12 C -0.196 4.196 13 C -0.041 4.041 14 C -0.249 4.249 15 C 0.125 3.875 16 O -0.230 6.230 17 C -0.418 4.418 18 H 0.105 0.895 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.020 2.980 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.254 1.254 25 C -0.213 4.213 26 C -0.033 4.033 27 N -0.119 5.119 28 N -0.303 5.303 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.350 0.650 39 H 0.346 0.654 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.230 0.770 43 H 0.154 0.846 44 H 0.121 0.879 45 H 0.151 0.849 46 H 0.123 0.877 47 H 0.274 0.726 48 H 0.111 0.889 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.049 30.471 5.395 33.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.066 4.066 4 C -0.145 4.145 5 C -0.067 4.067 6 N -0.396 5.396 7 C 0.018 3.982 8 C -0.172 4.172 9 C -0.185 4.185 10 N -0.071 5.071 11 C 0.052 3.948 12 C -0.198 4.198 13 C -0.060 4.060 14 C -0.268 4.268 15 C 0.074 3.926 16 O -0.136 6.136 17 C -0.494 4.494 18 H 0.122 0.878 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.839 3.161 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.178 1.178 25 C -0.232 4.232 26 C -0.052 4.052 27 N -0.098 5.098 28 N -0.169 5.169 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.247 0.753 43 H 0.171 0.829 44 H 0.139 0.861 45 H 0.169 0.831 46 H 0.140 0.860 47 H 0.083 0.917 48 H 0.129 0.871 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.376 28.272 7.092 31.289 hybrid contribution -0.827 0.705 -2.469 2.697 sum -12.202 28.977 4.624 31.780 Atomic orbital electron populations 1.22429 0.86532 1.01995 1.01373 1.61780 1.08993 1.14032 1.43293 1.22045 1.00370 0.87040 0.97175 1.21479 1.00972 0.94845 0.97250 1.21705 1.00682 0.93979 0.90294 1.58667 1.20402 1.24302 1.36256 1.20209 1.00755 0.84574 0.92621 1.22152 0.95507 0.98047 1.01447 1.24017 1.03859 0.84364 1.06306 1.47892 1.18267 1.09730 1.31226 1.21148 0.87640 0.82469 1.03505 1.19484 1.08515 0.98382 0.93395 1.21009 0.94532 0.95952 0.94485 1.21254 1.07661 0.97493 1.00418 1.20012 0.90472 0.88326 0.93776 1.83951 1.63973 1.41946 1.23696 1.21830 1.41331 1.07577 0.78616 0.87799 1.26642 0.95245 0.93648 1.06387 1.70183 1.37496 1.09216 1.38699 0.84633 0.79729 0.78614 0.73158 1.18223 1.19652 1.17786 1.20440 1.08251 1.02775 0.91746 1.20861 0.93108 0.91341 0.99863 1.78335 0.97828 1.19159 1.14457 1.75027 1.25207 0.96542 1.20136 0.92371 0.91049 0.93772 0.90816 0.93264 0.91654 0.92702 0.91339 0.94474 0.83664 0.84144 0.90074 0.90453 0.75340 0.82867 0.86103 0.83123 0.85972 0.91724 0.87133 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.13 127.69 1.17 1.47 16 2 N -0.56 -9.04 4.75 -927.03 -4.41 -13.45 16 3 C 0.06 0.76 4.96 86.30 0.43 1.18 16 4 C -0.11 -1.32 5.41 30.60 0.17 -1.15 16 5 C 0.06 0.65 6.79 86.31 0.59 1.23 16 6 N -0.87 -8.72 9.62 -186.72 -1.80 -10.52 16 7 C 0.15 2.51 5.53 85.56 0.47 2.98 16 8 C -0.03 -0.73 5.96 41.60 0.25 -0.48 16 9 C -0.03 -0.58 10.54 83.49 0.88 0.30 16 10 N -0.28 -6.38 3.43 -351.47 -1.21 -7.59 16 11 C 0.17 2.99 6.58 85.63 0.56 3.55 16 12 C -0.20 -5.50 5.25 -19.83 -0.10 -5.61 16 13 C -0.04 -1.28 9.69 22.25 0.22 -1.06 16 14 C -0.25 -10.42 9.17 22.39 0.21 -10.21 16 15 C 0.13 6.23 6.65 22.58 0.15 6.38 16 16 O -0.23 -13.91 9.76 -22.77 -0.22 -14.13 16 17 C -0.42 -24.18 9.49 67.92 0.64 -23.53 16 18 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 19 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 20 N -0.92 -56.40 13.67 21.61 0.30 -56.11 16 21 Si 1.02 42.24 29.55 68.60 2.03 44.26 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 25 C -0.21 -9.21 9.99 22.39 0.22 -8.98 16 26 C -0.03 -1.11 9.69 22.25 0.22 -0.90 16 27 N -0.12 -3.85 12.92 37.02 0.48 -3.37 16 28 N -0.30 -9.93 12.41 -48.60 -0.60 -10.53 16 29 H 0.06 0.83 6.58 -2.39 -0.02 0.81 16 30 H 0.07 0.83 6.30 -2.39 -0.02 0.82 16 31 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.96 7.93 -2.39 -0.02 0.94 16 33 H 0.05 0.45 8.12 -2.39 -0.02 0.43 16 34 H 0.06 0.73 6.47 -2.39 -0.02 0.71 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.35 2.39 9.08 -89.70 -0.81 1.58 16 39 H 0.35 2.67 8.99 -89.69 -0.81 1.86 16 40 H 0.08 1.53 7.93 -2.39 -0.02 1.51 16 41 H 0.08 0.87 8.12 -2.38 -0.02 0.85 16 42 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.28 8.01 -2.38 -0.02 1.26 16 44 H 0.12 1.71 8.08 -2.39 -0.02 1.69 16 45 H 0.15 3.33 8.06 -2.92 -0.02 3.30 16 46 H 0.12 5.17 5.64 -2.91 -0.02 5.16 16 47 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 48 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 49 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -82.34 407.32 0.46 -81.89 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.64 Total: 25.09 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 6.53 Total: -35.55 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -7.24 Total: -101.56 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.22 Total: -14.13 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -82.34 0.46 -81.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881284837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.329 kcal (2) G-P(sol) polarization free energy of solvation -82.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds