Wall clock time and date at job start Wed Apr 1 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28721 * 125.32020 * 2 1 4 4 N 1.28988 * 108.98441 * 180.02562 * 3 2 1 5 5 C 1.34184 * 107.25427 * 0.02562 * 4 3 2 6 6 C 1.47999 * 126.69870 * 179.97438 * 5 4 3 7 7 O 1.21532 * 120.00303 * 179.65913 * 6 5 4 8 8 N 1.34776 * 120.00106 * 359.93932 * 6 5 4 9 9 C 1.46502 * 119.99669 * 354.20862 * 8 6 5 10 10 C 1.50704 * 109.46810 * 84.89099 * 9 8 6 11 11 H 1.07996 * 120.00542 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99614 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00087 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99620 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47133 * 120.00198 * 14 12 10 17 17 H 1.48497 * 109.46999 * 239.99978 * 14 12 10 18 18 C 1.46499 * 120.00284 * 174.21435 * 8 6 5 19 19 C 1.53005 * 109.47020 * 241.81462 * 18 8 6 20 20 C 1.52996 * 109.47241 * 179.97438 * 19 18 8 21 21 C 1.53002 * 109.46940 * 60.00244 * 20 19 18 22 22 C 1.52997 * 109.47182 * 299.99956 * 21 20 19 23 23 C 1.52998 * 109.47212 * 300.00025 * 22 21 20 24 24 C 1.53002 * 109.47067 * 59.99904 * 23 22 21 25 25 C 1.52997 * 109.47182 * 300.00114 * 24 23 22 26 26 C 1.52992 * 109.47226 * 1.81450 * 18 8 6 27 27 C 1.53001 * 109.47395 * 59.99948 * 22 21 20 28 28 N 1.28869 * 125.31738 * 180.30553 * 2 1 3 29 29 H 1.08997 * 109.47235 * 89.97024 * 1 2 3 30 30 H 1.09004 * 109.47138 * 209.96810 * 1 2 3 31 31 H 1.08997 * 109.46819 * 329.97048 * 1 2 3 32 32 H 1.08998 * 109.47323 * 204.89071 * 9 8 6 33 33 H 1.08997 * 109.47566 * 324.88995 * 9 8 6 34 34 H 0.97000 * 119.99511 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.47189 * 300.00224 * 19 18 8 36 36 H 1.09008 * 109.46885 * 59.99635 * 19 18 8 37 37 H 1.09002 * 109.47398 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.47372 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.46911 * 60.00185 * 21 20 19 40 40 H 1.09007 * 109.47123 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46768 * 299.99848 * 23 22 21 42 42 H 1.08994 * 109.47120 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.46850 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47455 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47130 * 300.00348 * 25 24 23 46 46 H 1.09007 * 109.47346 * 300.00215 * 26 18 8 47 47 H 1.09002 * 109.47075 * 59.99899 * 26 18 8 48 48 H 1.08994 * 109.47514 * 179.97438 * 27 22 21 49 49 H 1.09002 * 109.46862 * 59.99672 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4470 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0015 6 6 4.6692 -1.5195 -0.0029 7 8 4.5469 -2.7286 0.0026 8 7 5.8983 -0.9666 -0.0046 9 6 6.0483 0.4850 -0.1331 10 6 5.9172 1.1256 1.2247 11 1 5.7403 0.5128 2.0962 12 6 6.0242 2.4942 1.3545 13 7 6.2400 3.2405 0.2933 14 14 5.8624 3.2882 3.0376 15 1 5.6235 2.2377 4.0595 16 1 7.1132 4.0199 3.3620 17 1 4.7212 4.2383 3.0290 18 6 7.0844 -1.8172 0.1219 19 6 7.8453 -1.4450 1.3960 20 6 9.0836 -2.3337 1.5285 21 6 9.9912 -2.1281 0.3140 22 6 9.2303 -2.5003 -0.9601 23 6 8.8002 -3.9668 -0.8873 24 6 7.8926 -4.1724 0.3272 25 6 8.6535 -3.8002 1.6013 26 6 6.6548 -3.2838 0.1945 27 6 7.9919 -1.6116 -1.0926 28 7 2.2100 -1.0515 -0.0056 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5143 32 1 7.0294 0.7135 -0.5494 33 1 5.2737 0.8733 -0.7943 34 1 6.3156 4.2032 0.3847 35 1 8.1514 -0.4002 1.3444 36 1 7.1988 -1.5918 2.2613 37 1 9.6260 -2.0683 2.4360 38 1 10.8737 -2.7609 0.4086 39 1 10.2977 -1.0834 0.2622 40 1 9.8768 -2.3534 -1.8254 41 1 9.6825 -4.5999 -0.7929 42 1 8.2578 -4.2317 -1.7948 43 1 7.5866 -5.2172 0.3793 44 1 8.0072 -3.9471 2.4666 45 1 9.5358 -4.4333 1.6957 46 1 6.0083 -3.4307 1.0598 47 1 6.1126 -3.5489 -0.7132 48 1 7.4501 -1.8764 -2.0005 49 1 8.2984 -0.5668 -1.1444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889935381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:35 Heat of formation + Delta-G solvation = 112.172484 kcal Electronic energy + Delta-G solvation = -33157.848929 eV Core-core repulsion = 29123.470543 eV Total energy + Delta-G solvation = -4034.378386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.72960 -41.36564 -38.65775 -35.29950 -34.60069 -32.70806 -32.43797 -32.28273 -32.15563 -30.73826 -28.27075 -27.10208 -25.60551 -25.45906 -24.54780 -22.80271 -22.61328 -21.22369 -21.10576 -20.90936 -19.09702 -17.19227 -17.10473 -17.06398 -16.32080 -15.85964 -15.80000 -14.63776 -14.45489 -14.14006 -14.08488 -13.95923 -13.81489 -13.40207 -13.35680 -13.05098 -12.98114 -12.74784 -12.65619 -12.54279 -12.21538 -12.07091 -11.92278 -11.64578 -11.18211 -11.04643 -10.90031 -10.77153 -10.67554 -10.48173 -10.42424 -10.41830 -10.32733 -10.26398 -9.94760 -9.79549 -9.74197 -9.68478 -9.26488 -9.19989 -8.55906 -8.29933 -7.64604 -5.96436 -3.96655 1.54526 2.24797 2.26818 3.32461 3.40713 3.42288 3.50308 3.84655 4.45724 4.53055 4.72501 4.85781 4.86237 4.89461 5.02070 5.15626 5.28420 5.39914 5.41636 5.44727 5.55561 5.58048 5.60723 5.65372 5.70490 5.75301 5.85251 5.91965 5.98225 6.11583 6.13363 6.20199 6.26343 6.28902 6.29234 6.43593 6.45684 6.51238 6.54455 6.59638 6.64342 6.73396 6.88786 6.93891 7.03135 7.07001 7.47596 7.65235 7.94072 8.23484 8.27294 8.70757 8.96764 9.03525 9.65310 11.12334 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.005281 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.888008 B = 5300.716831 C = 7138.061123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.155 5.155 3 N -0.081 5.081 4 N -0.174 5.174 5 C 0.131 3.869 6 C 0.610 3.390 7 O -0.540 6.540 8 N -0.564 5.564 9 C 0.230 3.770 10 C -0.505 4.505 11 H 0.053 0.947 12 C 0.075 3.925 13 N -0.886 5.886 14 Si 0.884 3.116 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.187 3.813 19 C -0.111 4.111 20 C -0.083 4.083 21 C -0.107 4.107 22 C -0.080 4.080 23 C -0.106 4.106 24 C -0.095 4.095 25 C -0.107 4.107 26 C -0.091 4.091 27 C -0.117 4.117 28 N -0.270 5.270 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.260 0.740 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 -10.140 -1.860 10.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.066 5.066 3 N -0.075 5.075 4 N -0.048 5.048 5 C -0.153 4.153 6 C 0.392 3.608 7 O -0.417 6.417 8 N -0.293 5.293 9 C 0.111 3.889 10 C -0.545 4.545 11 H 0.071 0.929 12 C -0.127 4.127 13 N -0.525 5.525 14 Si 0.712 3.288 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.211 1.211 18 C 0.103 3.897 19 C -0.149 4.149 20 C -0.102 4.102 21 C -0.145 4.145 22 C -0.099 4.099 23 C -0.144 4.144 24 C -0.114 4.114 25 C -0.145 4.145 26 C -0.129 4.129 27 C -0.156 4.156 28 N -0.125 5.125 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.767 -10.021 -1.927 10.356 hybrid contribution -0.128 0.475 1.067 1.175 sum -1.895 -9.545 -0.860 9.770 Atomic orbital electron populations 1.22293 0.70074 1.06353 1.05487 1.50208 1.10433 1.01290 1.44676 1.79133 0.97604 1.14166 1.16622 1.77039 1.06791 1.09041 1.11903 1.25446 0.92583 0.90995 1.06234 1.16289 0.81227 0.85127 0.78118 1.90793 1.85641 1.12784 1.52486 1.48196 1.02864 1.10909 1.67293 1.19815 0.98900 0.71582 0.98605 1.21188 1.48951 0.91684 0.92645 0.92876 1.24714 0.95067 0.96954 0.95985 1.69910 1.49216 1.05216 1.28123 0.86676 0.77573 0.79510 0.85036 1.20131 1.21154 1.21076 1.20293 0.84282 0.90159 0.94963 1.21858 0.95512 1.00760 0.96819 1.21067 0.96300 0.95045 0.97829 1.21545 0.97284 1.01266 0.94381 1.21007 0.96273 0.94887 0.97717 1.21544 0.98806 0.95932 0.98110 1.21294 0.96112 0.99422 0.94577 1.21550 0.99276 0.95990 0.97641 1.22101 0.94491 0.91847 1.04443 1.21897 0.95593 1.00559 0.97523 1.74921 1.02937 1.14612 1.19994 0.88504 0.87625 0.87253 0.94313 0.92311 0.93038 0.89609 0.92044 0.91436 0.92488 0.91715 0.91440 0.92569 0.92271 0.91647 0.92278 0.92695 0.90607 0.90246 0.92109 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.62 59.85 0.70 1.59 16 2 N -0.15 -2.59 4.39 -16.65 -0.07 -2.66 16 3 N -0.08 -1.65 13.23 60.35 0.80 -0.86 16 4 N -0.17 -4.06 8.15 32.10 0.26 -3.79 16 5 C 0.13 2.90 7.72 -156.25 -1.21 1.69 16 6 C 0.61 13.49 7.54 -12.26 -0.09 13.39 16 7 O -0.54 -11.95 12.32 5.34 0.07 -11.88 16 8 N -0.56 -12.03 2.37 -161.22 -0.38 -12.41 16 9 C 0.23 5.53 4.07 -5.19 -0.02 5.50 16 10 C -0.51 -13.13 6.77 -34.44 -0.23 -13.37 16 11 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 12 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 13 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 14 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.19 3.41 0.85 -131.82 -0.11 3.30 16 19 C -0.11 -1.98 4.08 -26.73 -0.11 -2.09 16 20 C -0.08 -1.20 3.19 -90.62 -0.29 -1.48 16 21 C -0.11 -1.41 5.19 -26.73 -0.14 -1.55 16 22 C -0.08 -1.08 3.19 -90.62 -0.29 -1.37 16 23 C -0.11 -1.35 5.19 -26.73 -0.14 -1.49 16 24 C -0.10 -1.33 3.19 -90.65 -0.29 -1.62 16 25 C -0.11 -1.43 5.19 -26.73 -0.14 -1.57 16 26 C -0.09 -1.58 2.83 -26.76 -0.08 -1.66 16 27 C -0.12 -1.93 4.43 -26.73 -0.12 -2.05 16 28 N -0.27 -5.29 12.17 32.11 0.39 -4.90 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.96 6.34 -51.93 -0.33 0.63 16 33 H 0.06 1.54 5.77 -51.93 -0.30 1.24 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.09 1.71 7.19 -51.93 -0.37 1.34 16 36 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.47 6.73 -51.93 -0.35 1.12 16 47 H 0.08 1.49 6.64 -51.93 -0.34 1.14 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.07 1.32 6.60 -51.93 -0.34 0.98 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -31.37 366.70 -7.86 -39.23 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.50 Total: 0.25 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.66 Total: -0.84 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 1.73 Total: -48.64 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.37 -7.86 -39.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889935381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.400 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds