Wall clock time and date at job start Wed Apr 1 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40079 * 126.03954 * 2 1 4 4 C 1.30836 * 108.20830 * 179.97438 * 3 2 1 5 5 C 1.39873 * 108.20031 * 359.77828 * 4 3 2 6 6 C 1.34946 * 126.03421 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.12714 * 359.97438 * 6 2 1 8 8 H 1.08997 * 110.36660 * 62.64903 * 7 6 2 9 9 C 1.54379 * 110.50912 * 300.22936 * 7 6 2 10 10 C 1.54272 * 105.05694 * 217.31832 * 9 7 6 11 11 C 1.54373 * 105.05841 * 0.02562 * 10 9 7 12 12 N 1.48559 * 104.60047 * 23.85510 * 11 10 9 13 13 C 1.46895 * 110.99824 * 200.96185 * 12 11 10 14 14 C 1.50700 * 109.47051 * 285.41260 * 13 12 11 15 15 O 1.21279 * 120.00113 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.46494 * 119.99635 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47248 * 90.00174 * 17 16 14 19 19 H 1.07999 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00385 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47439 * 90.00453 * 22 20 18 24 24 H 1.48504 * 109.47008 * 210.00380 * 22 20 18 25 25 H 1.48496 * 109.47181 * 329.99866 * 22 20 18 26 26 C 1.46493 * 119.99864 * 359.72839 * 16 14 13 27 27 C 1.53000 * 109.47637 * 90.00039 * 26 16 14 28 28 C 1.47197 * 109.47449 * 179.97438 * 27 26 16 29 29 N 7.43319 * 118.22748 * 249.72032 * 2 1 3 30 30 H 1.08999 * 109.47557 * 270.03355 * 1 2 3 31 31 H 1.09005 * 109.46910 * 30.02618 * 1 2 3 32 32 H 1.08995 * 109.47128 * 150.02222 * 1 2 3 33 33 H 1.08001 * 125.90126 * 180.02562 * 4 3 2 34 34 H 1.07999 * 126.04138 * 180.23792 * 5 4 3 35 35 H 1.09000 * 110.32590 * 336.21214 * 9 7 6 36 36 H 1.08997 * 110.32401 * 98.42923 * 9 7 6 37 37 H 1.09002 * 110.32129 * 118.90038 * 10 9 7 38 38 H 1.09001 * 110.31994 * 241.00075 * 10 9 7 39 39 H 1.09009 * 110.41172 * 265.06980 * 11 10 9 40 40 H 1.09001 * 110.40882 * 142.63201 * 11 10 9 41 41 H 1.09004 * 109.47210 * 165.41482 * 13 12 11 42 42 H 1.08997 * 109.47605 * 45.41843 * 13 12 11 43 43 H 1.09003 * 109.47006 * 210.00121 * 17 16 14 44 44 H 1.09004 * 109.47665 * 329.99813 * 17 16 14 45 45 H 0.96998 * 120.00151 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47192 * 209.99937 * 26 16 14 47 47 H 1.08996 * 109.47342 * 329.99648 * 26 16 14 48 48 H 1.09002 * 109.46747 * 300.00171 * 27 26 16 49 49 H 1.08996 * 109.47074 * 59.99445 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5437 -0.6666 0.0061 6 6 2.2588 -1.0913 0.0005 7 6 1.7972 -2.5258 0.0017 8 1 1.2337 -2.7438 -0.9056 9 6 0.9390 -2.8168 1.2515 10 6 1.3180 -4.2517 1.6728 11 6 2.3738 -4.7065 0.6424 12 7 2.9595 -3.4435 0.1239 13 6 3.6007 -3.6571 -1.1803 14 6 4.9057 -4.3851 -0.9852 15 8 5.2658 -4.6958 0.1304 16 7 5.6726 -4.6908 -2.0506 17 6 6.9409 -5.3990 -1.8609 18 6 6.7008 -6.8853 -1.9250 19 1 5.7031 -7.2645 -2.0900 20 6 7.7547 -7.7612 -1.7729 21 7 8.9696 -7.2995 -1.5714 22 14 7.4572 -9.6035 -1.8530 23 1 7.5984 -10.0672 -3.2567 24 1 8.4501 -10.3029 -0.9985 25 1 6.0867 -9.9052 -1.3675 26 6 5.2347 -4.3207 -3.3987 27 6 5.7625 -2.9262 -3.7416 28 6 5.3230 -2.5546 -5.0964 29 7 4.9807 -2.2700 -6.1432 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8901 -0.5135 33 1 4.4054 1.3709 0.0011 34 1 4.4210 -1.2964 0.0115 35 1 1.1791 -2.1125 2.0480 36 1 -0.1211 -2.7626 1.0038 37 1 1.7441 -4.2516 2.6761 38 1 0.4435 -4.9012 1.6336 39 1 1.9008 -5.2658 -0.1649 40 1 3.1412 -5.3109 1.1260 41 1 3.7893 -2.6939 -1.6545 42 1 2.9440 -4.2520 -1.8150 43 1 7.6395 -5.1097 -2.6460 44 1 7.3598 -5.1402 -0.8884 45 1 9.7111 -7.9156 -1.4648 46 1 5.6221 -5.0427 -4.1176 47 1 4.1455 -4.3169 -3.4387 48 1 5.3752 -2.2042 -3.0227 49 1 6.8518 -2.9300 -3.7016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932268800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:37 Heat of formation + Delta-G solvation = 88.585489 kcal Electronic energy + Delta-G solvation = -31003.605584 eV Core-core repulsion = 26968.204389 eV Total energy + Delta-G solvation = -4035.401195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42275 -39.63621 -38.28240 -36.78021 -35.17195 -33.56304 -32.96492 -32.20688 -31.26336 -30.81693 -28.03633 -27.73050 -26.86147 -25.97941 -23.99411 -22.87125 -21.91548 -21.53393 -20.56194 -19.57411 -18.52223 -17.66288 -17.20016 -16.57555 -16.40695 -16.16715 -15.54490 -15.12905 -15.08398 -14.87218 -14.67882 -14.37948 -14.11353 -13.83657 -13.75024 -13.38349 -13.33632 -13.03231 -12.77193 -12.66142 -12.62271 -12.41455 -12.28684 -12.17435 -12.06975 -11.82354 -11.67348 -11.30823 -11.29051 -11.19593 -10.97990 -10.85049 -10.68475 -10.66794 -10.61505 -10.18963 -9.70653 -9.33634 -9.06826 -8.50980 -8.47659 -8.43236 -7.82067 -6.09019 -4.13645 1.79901 2.37374 2.73020 2.81447 2.86572 3.27197 3.31492 3.35163 3.38736 3.46433 3.87739 4.17982 4.34859 4.38961 4.43678 4.45421 4.73503 4.77470 4.89912 4.96533 5.03086 5.08914 5.10194 5.12256 5.15249 5.25846 5.27148 5.33321 5.37332 5.48083 5.54478 5.62096 5.64190 5.80927 5.83094 5.84745 6.00459 6.06745 6.17146 6.22523 6.67750 6.70830 6.76301 6.95921 7.01647 7.38264 7.44757 7.58496 7.67488 7.87140 8.17545 8.28384 8.85267 9.02589 9.51890 10.99013 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.003385 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.290491 B = 8269.244248 C = 9837.795011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 N -0.302 5.302 4 C 0.043 3.957 5 C -0.245 4.245 6 C 0.094 3.906 7 C 0.124 3.876 8 H 0.066 0.934 9 C -0.116 4.116 10 C -0.121 4.121 11 C 0.036 3.964 12 N -0.472 5.472 13 C 0.018 3.982 14 C 0.512 3.488 15 O -0.511 6.511 16 N -0.599 5.599 17 C 0.247 3.753 18 C -0.528 4.528 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.118 3.882 27 C -0.051 4.051 28 C 0.217 3.783 29 N -0.447 5.447 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.182 0.818 34 H 0.154 0.846 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.264 0.736 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.107 0.893 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.818 11.554 2.610 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.159 5.159 3 N -0.124 5.124 4 C -0.142 4.142 5 C -0.274 4.274 6 C -0.033 4.033 7 C 0.013 3.987 8 H 0.084 0.916 9 C -0.154 4.154 10 C -0.160 4.160 11 C -0.092 4.092 12 N -0.196 5.196 13 C -0.114 4.114 14 C 0.297 3.703 15 O -0.386 6.386 16 N -0.332 5.332 17 C 0.128 3.872 18 C -0.567 4.567 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.008 4.008 27 C -0.093 4.093 28 C -0.101 4.101 29 N -0.124 5.124 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.199 0.801 34 H 0.172 0.828 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.125 0.875 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.432 12.961 2.051 21.819 hybrid contribution 0.050 -2.118 -0.408 2.158 sum -17.382 10.842 1.644 20.552 Atomic orbital electron populations 1.21812 0.74982 1.04088 1.03141 1.48355 1.06172 1.03305 1.58116 1.77342 1.02009 1.07561 1.25454 1.23895 0.95065 0.95416 0.99824 1.21355 0.96867 0.94329 1.14817 1.20657 0.91460 0.89206 1.01975 1.21047 0.91849 0.87367 0.98450 0.91642 1.22349 0.98204 0.98156 0.96691 1.22288 0.98386 0.95051 1.00238 1.23219 0.97256 0.91456 0.97254 1.64943 1.22358 1.09252 1.23042 1.22410 0.96069 1.01543 0.91370 1.20015 0.85109 0.80037 0.85151 1.90692 1.71978 1.52411 1.23469 1.48205 1.24061 1.56986 1.03954 1.19323 0.78407 0.90879 0.98590 1.21407 0.94283 0.91107 1.49906 0.92501 1.24909 0.95014 0.99010 0.95012 1.69915 0.99308 1.35005 1.48911 0.86538 0.78098 0.85174 0.77846 1.20707 1.21114 1.19942 1.21279 0.99207 0.93348 0.86989 1.19923 1.04358 0.99837 0.85162 1.29196 0.93013 0.93048 0.94839 1.81271 1.09666 1.09236 1.12249 0.90909 0.89510 0.89895 0.80108 0.82794 0.90687 0.91137 0.90533 0.91175 0.93827 0.87886 0.88158 0.92049 0.94809 0.93466 0.92673 0.88779 0.91044 0.87500 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 10.66 59.85 0.64 1.32 16 2 N -0.38 -4.11 4.01 -63.88 -0.26 -4.37 16 3 N -0.30 -3.87 12.57 30.63 0.39 -3.49 16 4 C 0.04 0.51 12.03 -17.36 -0.21 0.30 16 5 C -0.24 -3.03 9.20 -40.01 -0.37 -3.40 16 6 C 0.09 1.07 5.92 -82.26 -0.49 0.59 16 7 C 0.12 1.24 2.24 -67.20 -0.15 1.09 16 8 H 0.07 0.58 8.00 -51.93 -0.42 0.17 16 9 C -0.12 -0.98 5.87 -25.34 -0.15 -1.13 16 10 C -0.12 -1.14 7.00 -25.35 -0.18 -1.31 16 11 C 0.04 0.44 5.92 -2.19 -0.01 0.42 16 12 N -0.47 -5.98 4.07 -224.91 -0.92 -6.90 16 13 C 0.02 0.22 3.35 -4.98 -0.02 0.21 16 14 C 0.51 8.99 7.52 -10.98 -0.08 8.91 16 15 O -0.51 -11.34 14.80 5.56 0.08 -11.26 16 16 N -0.60 -10.54 2.46 -175.07 -0.43 -10.97 16 17 C 0.25 5.70 5.16 -5.20 -0.03 5.67 16 18 C -0.53 -13.78 9.39 -34.44 -0.32 -14.10 16 19 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.12 1.53 5.17 -4.05 -0.02 1.51 16 27 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 28 C 0.22 2.64 15.44 -20.71 -0.32 2.32 16 29 N -0.45 -6.62 18.55 42.22 0.78 -5.84 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.40 7.79 -51.93 -0.40 -0.01 16 33 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.15 2.03 7.31 -52.49 -0.38 1.65 16 35 H 0.07 0.71 7.86 -51.93 -0.41 0.31 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.50 7.75 -51.92 -0.40 0.09 16 40 H 0.10 1.58 7.24 -51.93 -0.38 1.20 16 41 H 0.10 1.11 5.88 -51.93 -0.31 0.80 16 42 H 0.06 0.69 7.02 -51.93 -0.36 0.33 16 43 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 44 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 47 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 48 H 0.11 0.93 7.20 -51.93 -0.37 0.56 16 49 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -34.25 406.02 -7.99 -42.24 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.50 Total: -0.27 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.98 Total: 3.28 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.30 Total: -56.00 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.25 -7.99 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932268800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.829 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds