Wall clock time and date at job start Wed Apr 1 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40079 * 126.03954 * 2 1 4 4 C 1.30836 * 108.20830 * 179.97438 * 3 2 1 5 5 C 1.39873 * 108.20031 * 359.77828 * 4 3 2 6 6 C 1.34946 * 126.03421 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.12714 * 359.97438 * 6 2 1 8 8 H 1.08997 * 110.36660 * 62.64903 * 7 6 2 9 9 C 1.54379 * 110.50912 * 300.22936 * 7 6 2 10 10 C 1.54272 * 105.05694 * 217.31832 * 9 7 6 11 11 C 1.54373 * 105.05841 * 0.02562 * 10 9 7 12 12 N 1.48559 * 104.60047 * 23.85510 * 11 10 9 13 13 C 1.46895 * 110.99824 * 200.96185 * 12 11 10 14 14 C 1.50700 * 109.47051 * 285.41260 * 13 12 11 15 15 O 1.21279 * 120.00113 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.46494 * 119.99635 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47248 * 90.00174 * 17 16 14 19 19 H 1.07999 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00385 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47439 * 90.00453 * 22 20 18 24 24 H 1.48504 * 109.47008 * 210.00380 * 22 20 18 25 25 H 1.48496 * 109.47181 * 329.99866 * 22 20 18 26 26 C 1.46493 * 119.99864 * 359.72839 * 16 14 13 27 27 C 1.53000 * 109.47637 * 90.00039 * 26 16 14 28 28 C 1.47197 * 109.47449 * 179.97438 * 27 26 16 29 29 N 7.43319 * 118.22748 * 249.72032 * 2 1 3 30 30 H 1.08999 * 109.47557 * 270.03355 * 1 2 3 31 31 H 1.09005 * 109.46910 * 30.02618 * 1 2 3 32 32 H 1.08995 * 109.47128 * 150.02222 * 1 2 3 33 33 H 1.08001 * 125.90126 * 180.02562 * 4 3 2 34 34 H 1.07999 * 126.04138 * 180.23792 * 5 4 3 35 35 H 1.09000 * 110.32590 * 336.21214 * 9 7 6 36 36 H 1.08997 * 110.32401 * 98.42923 * 9 7 6 37 37 H 1.09002 * 110.32129 * 118.90038 * 10 9 7 38 38 H 1.09001 * 110.31994 * 241.00075 * 10 9 7 39 39 H 1.09009 * 110.41172 * 265.06980 * 11 10 9 40 40 H 1.09001 * 110.40882 * 142.63201 * 11 10 9 41 41 H 1.09004 * 109.47210 * 165.41482 * 13 12 11 42 42 H 1.08997 * 109.47605 * 45.41843 * 13 12 11 43 43 H 1.09003 * 109.47006 * 210.00121 * 17 16 14 44 44 H 1.09004 * 109.47665 * 329.99813 * 17 16 14 45 45 H 0.96998 * 120.00151 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47192 * 209.99937 * 26 16 14 47 47 H 1.08996 * 109.47342 * 329.99648 * 26 16 14 48 48 H 1.09002 * 109.46747 * 300.00171 * 27 26 16 49 49 H 1.08996 * 109.47074 * 59.99445 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5437 -0.6666 0.0061 6 6 2.2588 -1.0913 0.0005 7 6 1.7972 -2.5258 0.0017 8 1 1.2337 -2.7438 -0.9056 9 6 0.9390 -2.8168 1.2515 10 6 1.3180 -4.2517 1.6728 11 6 2.3738 -4.7065 0.6424 12 7 2.9595 -3.4435 0.1239 13 6 3.6007 -3.6571 -1.1803 14 6 4.9057 -4.3851 -0.9852 15 8 5.2658 -4.6958 0.1304 16 7 5.6726 -4.6908 -2.0506 17 6 6.9409 -5.3990 -1.8609 18 6 6.7008 -6.8853 -1.9250 19 1 5.7031 -7.2645 -2.0900 20 6 7.7547 -7.7612 -1.7729 21 7 8.9696 -7.2995 -1.5714 22 14 7.4572 -9.6035 -1.8530 23 1 7.5984 -10.0672 -3.2567 24 1 8.4501 -10.3029 -0.9985 25 1 6.0867 -9.9052 -1.3675 26 6 5.2347 -4.3207 -3.3987 27 6 5.7625 -2.9262 -3.7416 28 6 5.3230 -2.5546 -5.0964 29 7 4.9807 -2.2700 -6.1432 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8901 -0.5135 33 1 4.4054 1.3709 0.0011 34 1 4.4210 -1.2964 0.0115 35 1 1.1791 -2.1125 2.0480 36 1 -0.1211 -2.7626 1.0038 37 1 1.7441 -4.2516 2.6761 38 1 0.4435 -4.9012 1.6336 39 1 1.9008 -5.2658 -0.1649 40 1 3.1412 -5.3109 1.1260 41 1 3.7893 -2.6939 -1.6545 42 1 2.9440 -4.2520 -1.8150 43 1 7.6395 -5.1097 -2.6460 44 1 7.3598 -5.1402 -0.8884 45 1 9.7111 -7.9156 -1.4648 46 1 5.6221 -5.0427 -4.1176 47 1 4.1455 -4.3169 -3.4387 48 1 5.3752 -2.2042 -3.0227 49 1 6.8518 -2.9300 -3.7016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932268800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:36 Heat of formation + Delta-G solvation = 66.223383 kcal Electronic energy + Delta-G solvation = -31004.575278 eV Core-core repulsion = 26968.204389 eV Total energy + Delta-G solvation = -4036.370889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.25807 -40.86252 -39.31935 -37.90684 -36.57778 -34.87012 -34.28323 -33.17727 -32.14964 -32.05868 -29.59821 -28.56915 -27.56128 -27.28362 -25.28507 -24.38950 -22.92588 -22.33280 -21.41159 -20.37040 -19.85986 -18.81506 -18.32526 -18.10528 -17.65026 -17.27338 -16.68045 -16.27607 -16.10181 -15.90481 -15.86874 -15.54343 -15.17873 -14.90383 -14.63507 -14.54425 -14.30981 -14.12433 -13.82451 -13.71963 -13.52968 -13.48792 -13.32329 -13.29526 -13.18581 -12.93131 -12.89707 -12.70265 -12.58407 -12.45904 -12.19405 -12.16119 -12.06353 -11.79447 -11.63064 -11.54820 -11.41395 -10.55347 -10.49275 -10.12074 -9.43607 -9.39251 -9.33345 -8.14465 -6.26617 0.96939 1.41271 1.43624 1.52661 1.65550 1.69590 1.83016 1.97240 1.99441 2.25142 2.46111 2.93769 3.15864 3.19377 3.51699 3.61480 3.80663 3.82742 3.99123 4.03454 4.13631 4.15605 4.27910 4.31860 4.39734 4.42887 4.47653 4.58743 4.60494 4.70794 4.72551 4.84018 4.85637 4.92211 5.00478 5.06858 5.07196 5.15845 5.21851 5.28825 5.33824 5.39342 5.65724 5.82932 5.86244 5.88319 5.97376 6.17321 6.21186 6.60367 6.81025 6.83065 6.87911 7.39247 7.63125 8.92082 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.003385 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.290491 B = 8269.244248 C = 9837.795011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.373 5.373 3 N -0.330 5.330 4 C 0.037 3.963 5 C -0.268 4.268 6 C 0.098 3.902 7 C 0.128 3.872 8 H 0.092 0.908 9 C -0.108 4.108 10 C -0.115 4.115 11 C 0.034 3.966 12 N -0.497 5.497 13 C 0.033 3.967 14 C 0.507 3.493 15 O -0.567 6.567 16 N -0.600 5.600 17 C 0.263 3.737 18 C -0.537 4.537 19 H 0.054 0.946 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.957 3.043 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.115 3.885 27 C -0.039 4.039 28 C 0.245 3.755 29 N -0.489 5.489 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.199 0.801 34 H 0.139 0.861 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.031 0.969 44 H 0.003 0.997 45 H 0.264 0.736 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.132 0.868 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 11.799 1.685 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.157 5.157 3 N -0.152 5.152 4 C -0.147 4.147 5 C -0.298 4.298 6 C -0.031 4.031 7 C 0.018 3.982 8 H 0.110 0.890 9 C -0.146 4.146 10 C -0.153 4.153 11 C -0.094 4.094 12 N -0.221 5.221 13 C -0.098 4.098 14 C 0.295 3.705 15 O -0.445 6.445 16 N -0.332 5.332 17 C 0.141 3.859 18 C -0.575 4.575 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.782 3.218 23 H -0.194 1.194 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.010 4.010 27 C -0.080 4.080 28 C -0.072 4.072 29 N -0.167 5.167 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.215 0.785 34 H 0.157 0.843 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.021 0.979 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.121 0.879 48 H 0.150 0.850 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.708 13.238 1.087 24.602 hybrid contribution 1.052 -2.175 -0.063 2.417 sum -19.655 11.063 1.024 22.578 Atomic orbital electron populations 1.22203 0.72607 1.05720 1.04567 1.48648 1.07493 1.02517 1.57023 1.77291 1.02534 1.08853 1.26548 1.24208 0.95559 0.95567 0.99399 1.21337 0.97140 0.94574 1.16723 1.20835 0.91296 0.89979 1.00947 1.21136 0.91002 0.85726 1.00332 0.89048 1.22356 0.99943 0.96790 0.95507 1.22254 0.98245 0.96256 0.98570 1.23131 0.96821 0.91182 0.98218 1.64800 1.24167 1.09960 1.23195 1.22292 0.93340 1.02013 0.92204 1.20932 0.86302 0.79230 0.84041 1.90671 1.73460 1.54663 1.25710 1.48070 1.22449 1.56452 1.06221 1.18749 0.80914 0.90187 0.96002 1.21748 0.94010 0.92756 1.49022 0.92777 1.25723 0.94887 1.03367 0.94888 1.70030 1.00090 1.36390 1.50156 0.85572 0.77792 0.80092 0.78295 1.19366 1.21214 1.19691 1.21480 1.01104 0.94328 0.84039 1.19845 1.04529 0.98851 0.84776 1.29219 0.91715 0.91783 0.94457 1.81312 1.11189 1.10706 1.13492 0.89553 0.88970 0.87284 0.78463 0.84269 0.91905 0.87462 0.91882 0.88652 0.92580 0.92175 0.86052 0.89548 0.95053 0.97912 0.92674 0.89732 0.87879 0.85032 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.66 127.77 1.36 2.24 16 2 N -0.37 -7.21 4.01 -356.03 -1.43 -8.64 16 3 N -0.33 -7.98 12.57 -57.02 -0.72 -8.70 16 4 C 0.04 0.85 12.03 85.24 1.03 1.87 16 5 C -0.27 -6.41 9.20 21.99 0.20 -6.20 16 6 C 0.10 2.01 5.92 41.41 0.24 2.25 16 7 C 0.13 2.16 2.24 44.31 0.10 2.25 16 8 H 0.09 1.13 8.00 -2.39 -0.02 1.11 16 9 C -0.11 -1.45 5.87 31.49 0.18 -1.27 16 10 C -0.12 -1.90 7.00 31.49 0.22 -1.68 16 11 C 0.03 0.80 5.92 86.45 0.51 1.31 16 12 N -0.50 -11.86 4.07 -865.49 -3.52 -15.38 16 13 C 0.03 0.76 3.35 85.56 0.29 1.05 16 14 C 0.51 17.88 7.52 87.66 0.66 18.54 16 15 O -0.57 -26.38 14.80 -3.03 -0.04 -26.43 16 16 N -0.60 -21.09 2.46 -826.18 -2.03 -23.12 16 17 C 0.26 12.56 5.16 85.63 0.44 13.00 16 18 C -0.54 -28.56 9.39 25.60 0.24 -28.32 16 19 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.01 0.57 5.46 84.66 0.46 1.03 16 21 N -0.93 -53.66 13.29 21.45 0.28 -53.38 16 22 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.12 2.77 5.17 86.38 0.45 3.22 16 27 C -0.04 -0.73 6.03 28.79 0.17 -0.55 16 28 C 0.25 5.45 15.44 89.42 1.38 6.83 16 29 N -0.49 -13.71 18.55 20.02 0.37 -13.34 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.11 0.50 7.79 -2.39 -0.02 0.48 16 33 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.14 3.69 7.31 -2.91 -0.02 3.67 16 35 H 0.06 1.03 7.86 -2.39 -0.02 1.01 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.15 7.75 -2.38 -0.02 1.13 16 40 H 0.06 1.93 7.24 -2.39 -0.02 1.91 16 41 H 0.12 2.32 5.88 -2.38 -0.01 2.31 16 42 H 0.09 1.62 7.02 -2.39 -0.02 1.60 16 43 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 44 H 0.00 0.16 7.42 -2.38 -0.02 0.14 16 45 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 47 H 0.10 1.86 6.44 -2.39 -0.02 1.84 16 48 H 0.13 1.91 7.20 -2.39 -0.02 1.90 16 49 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -78.84 406.02 3.83 -75.01 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.95 Total: 13.15 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 7.94 Total: 15.57 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -7.04 Total: -122.55 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -78.84 3.83 -75.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932268800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.235 kcal (2) G-P(sol) polarization free energy of solvation -78.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds